# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/166533
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.10.10/FF/166533
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 55.737
#=GS Q9KPR4/126-194      AC Q9KPR4
#=GS Q9KPR4/126-194      OS Vibrio cholerae O1 biovar El Tor str. N16961
#=GS Q9KPR4/126-194      DE RNA polymerase sigma-70 factor, ECF subfamily
#=GS Q9KPR4/126-194      DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS Q9KPR4/126-194      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS Q9KPR4/126-194      DR GO; GO:0006352; GO:0016987; 
#=GS A0A0H8NHC6/80-148   AC A0A0H8NHC6
#=GS A0A0H8NHC6/80-148   OS Vibrio cholerae
#=GS A0A0H8NHC6/80-148   DE RNA polymerase sigma factor
#=GS A0A0H8NHC6/80-148   DR GENE3D; 0eeb19ee45c49e66d01add518d59d561/80-148; 
#=GS A0A0H8NHC6/80-148   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A085RPH3/126-194  AC A0A085RPH3
#=GS A0A085RPH3/126-194  OS Vibrio cholerae
#=GS A0A085RPH3/126-194  DE RNA polymerase sigma factor
#=GS A0A085RPH3/126-194  DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS A0A085RPH3/126-194  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS D7HE87/126-194      AC D7HE87
#=GS D7HE87/126-194      OS Vibrio cholerae RC385
#=GS D7HE87/126-194      DE RNA polymerase sigma-70 factor
#=GS D7HE87/126-194      DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS D7HE87/126-194      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0X1KZ59/126-194  AC A0A0X1KZ59
#=GS A0A0X1KZ59/126-194  OS Vibrio cholerae MO10
#=GS A0A0X1KZ59/126-194  DE RNA polymerase sigma-70 factor
#=GS A0A0X1KZ59/126-194  DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS A0A0X1KZ59/126-194  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS C2HVI5/126-194      AC C2HVI5
#=GS C2HVI5/126-194      OS Vibrio albensis VL426
#=GS C2HVI5/126-194      DE RNA polymerase sigma-70 factor ECF subfamily
#=GS C2HVI5/126-194      DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS C2HVI5/126-194      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio albensis; 
#=GS C3LQ74/126-194      AC C3LQ74
#=GS C3LQ74/126-194      OS Vibrio cholerae M66-2
#=GS C3LQ74/126-194      DE RNA polymerase sigma-70 factor, ECF subfamily
#=GS C3LQ74/126-194      DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS C3LQ74/126-194      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0K9US60/126-194  AC A0A0K9US60
#=GS A0A0K9US60/126-194  OS Vibrio cholerae 2740-80
#=GS A0A0K9US60/126-194  DE RNA polymerase sigma factor
#=GS A0A0K9US60/126-194  DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS A0A0K9US60/126-194  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H3AGM3/126-194  AC A0A0H3AGM3
#=GS A0A0H3AGM3/126-194  OS Vibrio cholerae O395
#=GS A0A0H3AGM3/126-194  DE RNA polymerase sigma-70 factor, ECF subfamily
#=GS A0A0H3AGM3/126-194  DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS A0A0H3AGM3/126-194  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H3Q0X5/126-194  AC A0A0H3Q0X5
#=GS A0A0H3Q0X5/126-194  OS Vibrio cholerae B33
#=GS A0A0H3Q0X5/126-194  DE RNA polymerase sigma-70 factor ECF subfamily
#=GS A0A0H3Q0X5/126-194  DR GENE3D; ad9ed7db1997f3c869de958c9ce2c382/126-194; 
#=GS A0A0H3Q0X5/126-194  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0A0SXW3/98-192   AC A0A0A0SXW3
#=GS A0A0A0SXW3/98-192   OS Vibrio coralliilyticus
#=GS A0A0A0SXW3/98-192   DE RNA polymerase sigma factor
#=GS A0A0A0SXW3/98-192   DR GENE3D; d7011cb003fdc1a4ed262319c31a710d/98-192; 
#=GS A0A0A0SXW3/98-192   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio coralliilyticus; 
#=GS A0A086WKG6/98-192   AC A0A086WKG6
#=GS A0A086WKG6/98-192   OS Vibrio sp. B183
#=GS A0A086WKG6/98-192   DE RNA polymerase sigma factor
#=GS A0A086WKG6/98-192   DR GENE3D; d7011cb003fdc1a4ed262319c31a710d/98-192; 
#=GS A0A086WKG6/98-192   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. B183; 
#=GS U4E606/114-199      AC U4E606
#=GS U4E606/114-199      OS Vibrio nigripulchritudo FTn2
#=GS U4E606/114-199      DE Putative RNA polymerase sigma-70 factor
#=GS U4E606/114-199      DR GENE3D; e41977c79a730bb401562c06e2ed2493/114-199; 
#=GS U4E606/114-199      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio nigripulchritudo; 
#=GS U4JV78/114-199      AC U4JV78
#=GS U4JV78/114-199      OS Vibrio nigripulchritudo
#=GS U4JV78/114-199      DE Putative RNA polymerase sigma-70 factor
#=GS U4JV78/114-199      DR GENE3D; e41977c79a730bb401562c06e2ed2493/114-199; 
#=GS U4JV78/114-199      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio nigripulchritudo; 
#=GS F9T5Y0/97-191       AC F9T5Y0
#=GS F9T5Y0/97-191       OS Vibrio tubiashii ATCC 19109
#=GS F9T5Y0/97-191       DE RNA polymerase sigma factor
#=GS F9T5Y0/97-191       DR GENE3D; e9bfdbc4280c96c3febcdeb2e94ddabc/97-191; 
#=GS F9T5Y0/97-191       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio oreintalis group; Vibrio tubiashii; 
#=GS A0A178JHB0/97-191   AC A0A178JHB0
#=GS A0A178JHB0/97-191   OS Vibrio europaeus
#=GS A0A178JHB0/97-191   DE RNA polymerase sigma factor
#=GS A0A178JHB0/97-191   DR GENE3D; fa9ea1ca6cc106bfaa13f4063b8587b8/97-191; 
#=GS A0A178JHB0/97-191   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio oreintalis group; Vibrio europaeus; 
#=GS D2YIP8/127-194      AC D2YIP8
#=GS D2YIP8/127-194      OS Vibrio mimicus VM603
#=GS D2YIP8/127-194      DE RNA polymerase sigma factor
#=GS D2YIP8/127-194      DR GENE3D; f043663d97489957d2624de0e01e1667/127-194; 
#=GS D2YIP8/127-194      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio mimicus; 
#=GS A0A0Q0TZA6/127-194  AC A0A0Q0TZA6
#=GS A0A0Q0TZA6/127-194  OS Vibrio metoecus
#=GS A0A0Q0TZA6/127-194  DE RNA polymerase sigma factor
#=GS A0A0Q0TZA6/127-194  DR GENE3D; c568971537a05918fabea4464af57edd/127-194; 
#=GS A0A0Q0TZA6/127-194  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio metoecus; 
#=GS D0ILT9/127-194      AC D0ILT9
#=GS D0ILT9/127-194      OS Vibrio sp. RC586
#=GS D0ILT9/127-194      DE RNA polymerase sigma factor
#=GS D0ILT9/127-194      DR GENE3D; c568971537a05918fabea4464af57edd/127-194; 
#=GS D0ILT9/127-194      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. RC586; 
#=GF TC 159.1 3.8E-51
#=GF SQ 19
Q9KPR4/126-194              -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
A0A0H8NHC6/80-148           -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
A0A085RPH3/126-194          -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
D7HE87/126-194              -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
A0A0X1KZ59/126-194          -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
C2HVI5/126-194              -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
C3LQ74/126-194              -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
A0A0K9US60/126-194          -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
A0A0H3AGM3/126-194          -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
A0A0H3Q0X5/126-194          -----------------------------PEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL
A0A0A0SXW3/98-192           -QRGKDLHIHSEDIWPNDYCPPDLVEHYAPEQEMLKEQVVKFLDVLPDAQKKVVQAVYLEELPHQQVADMYDIPVGTVKSRLRLAVEKLRHSIEVE--
A0A086WKG6/98-192           -QRGKDLHIHSEDIWPNDYCPPDLVEHYAPEQEMLKEQVVKFLDVLPDAQKKVVQAVYLEELPHQQVADMYDIPVGTVKSRLRLAVEKLRHSIEVE--
U4E606/114-199              --------VHSEDIWASDYCPPDLVDHYSPEQNMLKEQVVRFLDVLPQSQKDVVKAVYLDELPHQQVADMFDIPLGTVKSRLRLAVEKLRHSMN----
U4JV78/114-199              --------VHSEDIWASDYCPPDLVDHYSPEQNMLKEQVVRFLDVLPQSQKDVVKAVYLDELPHQQVADMFDIPLGTVKSRLRLAVEKLRHSMN----
F9T5Y0/97-191               KQKGREAHIHSEDIWPNDYCPPDLVEHYSPETERLKQQIIKYLDILPEAQKKVVKAVYLEELPHQQVADMFDIPLGTVKSRLRLAVEKLRNSIEA---
A0A178JHB0/97-191           KQKGREAHIHSEDIWPNDYCPPDLVEHYSPETERLKQQIIKYLDILPEAQKKVVKAVYLEELPHQQVADMFDIPLGTVKSRLRLAVEKLRNSIEA---
D2YIP8/127-194              ------------------------------EQDLLKEQVMKFLDQLPKAQQQVIKAVYLEDIPQQDVAEMLDIPLGTVKSRLRLAVEKLRLSMDAESL
A0A0Q0TZA6/127-194          ------------------------------EQDLLKEQVRKFLDRLPESQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESV
D0ILT9/127-194              ------------------------------EQDLLKEQVRKFLDRLPESQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESV
#=GC scorecons              00000000122222211222222221221696659979757899499669659779999786969599895999799999999999999949664321
#=GC scorecons_70           _____________________________***__*****_****_******_*************_****_*******************_**_____
#=GC scorecons_80           ______________________________*___*****_****_**__*__*_*******_*_*_****_*******************_*______
#=GC scorecons_90           ______________________________*___**_*____**_**__*__*__****_*_*_*_****_***_***************_*______
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