PDB 6ir9

PDB Links
Overview

PDB Information

PDB	6IR9
Method	ELECTRON MICROSCOPY
Host Organism	Escherichia coli
Gene Source	Komagataella phaffii (strain GS115 / ATCC 20864)
Primary Citation	Structural insight into nucleosome transcription by RNA polymerase II with elongation factors. Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I. Science
Header	Transcription/Rna/Dna
Released	2018-11-12
Resolution	3.800
CATH Insert Date	24 Feb, 2019

PDB Images (50)

6ir9

PDB 6ir9

6ir9a

PDB Chain 6ir9a

6ir9A

PDB Chain 6ir9A

6ir9b

PDB Chain 6ir9b

6ir9B

PDB Chain 6ir9B

6ir9c

PDB Chain 6ir9c

6ir9C

PDB Chain 6ir9C

6ir9d

PDB Chain 6ir9d

6ir9D

PDB Chain 6ir9D

6ir9e

PDB Chain 6ir9e

6ir9E

PDB Chain 6ir9E

6ir9f

PDB Chain 6ir9f

6ir9F

PDB Chain 6ir9F

6ir9g

PDB Chain 6ir9g

6ir9G

PDB Chain 6ir9G

6ir9h

PDB Chain 6ir9h

6ir9H

PDB Chain 6ir9H

6ir9I

PDB Chain 6ir9I

6ir9J

PDB Chain 6ir9J

6ir9K

PDB Chain 6ir9K

6ir9L

PDB Chain 6ir9L

6ir9M

PDB Chain 6ir9M

6ir9N

PDB Chain 6ir9N

6ir9P

PDB Chain 6ir9P

6ir9T

PDB Chain 6ir9T

6ir9V

PDB Chain 6ir9V

6ir9W

PDB Chain 6ir9W

6ir9a00

CATH Domain 6ir9a00

6ir9b00

CATH Domain 6ir9b00

6ir9c00

CATH Domain 6ir9c00

6ir9C01

CATH Domain 6ir9C01

6ir9C02

CATH Domain 6ir9C02

6ir9d00

CATH Domain 6ir9d00

6ir9D01

CATH Domain 6ir9D01

6ir9D02

CATH Domain 6ir9D02

6ir9e00

CATH Domain 6ir9e00

6ir9E01

CATH Domain 6ir9E01

6ir9E02

CATH Domain 6ir9E02

6ir9f00

CATH Domain 6ir9f00

6ir9F00

CATH Domain 6ir9F00

6ir9g00

CATH Domain 6ir9g00

6ir9G01

CATH Domain 6ir9G01

6ir9G02

CATH Domain 6ir9G02

6ir9h00

CATH Domain 6ir9h00

6ir9H00

CATH Domain 6ir9H00

6ir9J00

CATH Domain 6ir9J00

6ir9K00

CATH Domain 6ir9K00

6ir9L00

CATH Domain 6ir9L00

6ir9M00

CATH Domain 6ir9M00

6ir9V00

CATH Domain 6ir9V00

PDB Prints

PDB Chains (26)

Chain ID	Date inserted into CATH	CATH Status
a	24 Feb, 2019	Chopped
A	24 Feb, 2019	Holding pen
b	24 Feb, 2019	Chopped
B	24 Feb, 2019	Holding pen
c	24 Feb, 2019	Chopped
C	24 Feb, 2019	Chopped
d	24 Feb, 2019	Chopped
D	24 Feb, 2019	Chopped
e	24 Feb, 2019	Chopped
E	24 Feb, 2019	Chopped
f	24 Feb, 2019	Chopped
F	24 Feb, 2019	Chopped
g	24 Feb, 2019	Chopped
G	24 Feb, 2019	Chopped
h	24 Feb, 2019	Chopped
H	24 Feb, 2019	Chopped
I	24 Feb, 2019	Holding pen
J	24 Feb, 2019	Chopped
K	24 Feb, 2019	Chopped
L	24 Feb, 2019	Chopped
M	24 Feb, 2019	Chopped
N	24 Feb, 2019	Rejected
P	24 Feb, 2019	Rejected
T	24 Feb, 2019	Rejected
V	24 Feb, 2019	Chopped
W	24 Feb, 2019	Write scan list

CATH Domains (23)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
6ir9a00	25 Feb, 2019	1.10.20.10	Assigned
6ir9b00	25 Feb, 2019	1.10.20.10	Assigned
6ir9c00	25 Feb, 2019	1.10.20.10	Assigned
6ir9C01	25 Feb, 2019	3.30.1360.10	Assigned
6ir9C02	25 Feb, 2019	2.170.120.12	Assigned
6ir9d00	25 Feb, 2019	1.10.20.10	Assigned
6ir9D01	25 Feb, 2019		Holding pen
6ir9D02	25 Feb, 2019	1.20.1250.40	Assigned
6ir9e00	25 Feb, 2019	1.10.20.10	Assigned
6ir9E01	25 Feb, 2019	3.40.1340.10	Assigned
6ir9E02	25 Feb, 2019	3.90.940.20	Assigned
6ir9f00	25 Feb, 2019	1.10.20.10	Assigned
6ir9F00	25 Feb, 2019	3.90.940.10	Assigned
6ir9g00	25 Feb, 2019	1.10.20.10	Assigned
6ir9G01	25 Feb, 2019	3.30.1490.120	Assigned
6ir9G02	25 Feb, 2019	2.40.50.140	Assigned
6ir9h00	25 Feb, 2019	1.10.20.10	Assigned
6ir9H00	25 Feb, 2019	2.40.50.140	Assigned
6ir9J00	25 Feb, 2019	1.10.10.60	Assigned
6ir9K00	25 Feb, 2019	3.30.1360.10	Assigned
6ir9L00	25 Feb, 2019	2.20.28.30	Assigned
6ir9M00	25 Feb, 2019	2.20.25.190	Assigned
6ir9V00	25 Feb, 2019	3.30.40.210	Assigned

UniProtKB Entries (23)

Accession	Gene ID	Taxon	Description
C4R3Z5	C4R3Z5_KOMPG	Komagataella phaffii GS115	RNA polymerase II subunit B12.5
C4R1V1	C4R1V1_KOMPG	Komagataella phaffii GS115	RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III
P84243	H33_HUMAN	Homo sapiens	Histone H3.3
C4R2U9	C4R2U9_KOMPG	Komagataella phaffii GS115	RNA polymerase II subunit B32
C4R4Y0	C4R4Y0_KOMPG	Komagataella phaffii GS115	DNA-directed RNA polymerase subunit
P06899	H2B1J_HUMAN	Homo sapiens	Histone H2B type 1-J
C4R0E6	C4R0E6_KOMPG	Komagataella phaffii GS115	Transcription elongation factor SPT4
C4R3P8	C4R3P8_KOMPG	Komagataella phaffii GS115	RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III
C4QZ45	C4QZ45_KOMPG	Komagataella phaffii GS115	Transcription elongation factor 1 homolog
C4R009	C4R009_KOMPG	Komagataella phaffii GS115	RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III
P04908	H2A1B_HUMAN	Homo sapiens	Histone H2A type 1-B/E
C4R9A1	C4R9A1_KOMPG	Komagataella phaffii GS115	RNA polymerase II subunit
C4QZQ7	C4QZQ7_KOMPG	Komagataella phaffii GS115	DNA-directed RNA polymerase subunit beta
F2QMI1	F2QMI1_KOMPC	Komagataella phaffii CBS 7435	RNA polymerase subunit ABC10-alpha
C4R370	C4R370_KOMPG	Komagataella phaffii GS115	Protein that forms a complex with Spt4p
P84243	H33_HUMAN	Homo sapiens	Histone H3.3
F2QPE6	F2QPE6_KOMPC	Komagataella phaffii CBS 7435	DNA-directed RNA polymerase subunit
P62805	H4_HUMAN	Homo sapiens	Histone H4
C4R273	C4R273_KOMPG	Komagataella phaffii GS115	DNA-directed RNA polymerases I, II, and III subunit RPABC3
P04908	H2A1B_HUMAN	Homo sapiens	Histone H2A type 1-B/E
P62805	H4_HUMAN	Homo sapiens	Histone H4
C4R7L2	C4R7L2_KOMPG	Komagataella phaffii GS115	RNA polymerase II third largest subunit B44, part of central core
P06899	H2B1J_HUMAN	Homo sapiens	Histone H2B type 1-J