PDB 6az1

PDB Information

PDB6AZ1
MethodELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation
Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.
Shalev-Benami, M., Zhang, Y., Rozenberg, H., Nobe, Y., Taoka, M., Matzov, D., Zimmerman, E., Bashan, A., Isobe, T., Jaffe, C.L., Yonath, A., Skiniotis, G.
Nat Commun
HeaderRibosome/Antibiotic
Released2017-09-09
Resolution2.700
CATH Insert Date17 Dec, 2017

PDB Images (73)

PDB Prints

PDB Chains (38)

Chain ID Date inserted into CATH CATH Status
1 17 Dec, 2017 Rejected
2 17 Dec, 2017 Rejected
3 17 Dec, 2017 Rejected
4 17 Dec, 2017 Rejected
5 17 Dec, 2017 Rejected
a 17 Dec, 2017 Chopped
A 17 Dec, 2017 Chopped
b 17 Dec, 2017 Chopped
B 17 Dec, 2017 Chopped
c 17 Dec, 2017 Chopped
C 17 Dec, 2017 Chopped
d 17 Dec, 2017 Chopped
D 17 Dec, 2017 Chopped
e 17 Dec, 2017 Holding pen
E 17 Dec, 2017 Chopped
f 17 Dec, 2017 Domchop allotted
F 17 Dec, 2017 Chopped
g 17 Dec, 2017 Chopped
G 17 Dec, 2017 Holding pen
H 17 Dec, 2017 Chopped
I 17 Dec, 2017 Chopped
J 17 Dec, 2017 Chopped
K 17 Dec, 2017 Chopped
L 17 Dec, 2017 Chopped
M 17 Dec, 2017 Chopped
N 17 Dec, 2017 Chopped
O 17 Dec, 2017 Chopped
P 17 Dec, 2017 Chopped
Q 17 Dec, 2017 Chopped
R 17 Dec, 2017 Holding pen
S 17 Dec, 2017 Chopped
T 17 Dec, 2017 Chopped
U 17 Dec, 2017 Chopped
V 17 Dec, 2017 Chopped
W 17 Dec, 2017 Chopped
X 17 Dec, 2017 Holding pen
Y 17 Dec, 2017 Chopped
Z 17 Dec, 2017 Chopped

CATH Domains (34)

Domain ID Date inserted into CATH Superfamily CATH Status
6az1a00 23 Dec, 2017 1.10.10.10 Assigned
6az1A00 21 Feb, 2018 Holding pen
6az1b00 23 Dec, 2017 3.30.1740.20 Assigned
6az1B01 23 Dec, 2017 3.40.50.10490 Assigned
6az1c00 23 Dec, 2017 2.20.25.100 Assigned
6az1C01 23 Dec, 2017 3.30.300.20 Assigned
6az1C02 23 Dec, 2017 3.30.1140.32 Assigned
6az1d00 23 Dec, 2017 2.40.50.140 Assigned
6az1D01 23 Dec, 2017 Holding pen
6az1E01 23 Dec, 2017 3.10.290.10 Assigned
6az1E02 23 Dec, 2017 2.40.50.740 Assigned
6az1E03 23 Dec, 2017 2.30.30.30 Assigned
6az1F01 23 Dec, 2017 3.30.160.20 Assigned
6az1F02 23 Dec, 2017 3.30.230.10 Assigned
6az1g01 23 Dec, 2017 2.130.10.10 Assigned
6az1H00 23 Dec, 2017 1.10.455.10 Assigned
6az1I00 21 Feb, 2018 Holding pen
6az1J01 23 Dec, 2017 3.30.1370.30 Assigned
6az1J02 23 Dec, 2017 3.30.1490.10 Assigned
6az1K01 23 Dec, 2017 Holding pen
6az1L00 23 Dec, 2017 3.30.230.10 Assigned
6az1M00 23 Dec, 2017 3.30.70.600 Assigned
6az1N00 23 Dec, 2017 1.10.10.10 Assigned
6az1O00 23 Dec, 2017 3.30.420.80 Assigned
6az1P00 23 Dec, 2017 Holding pen
6az1Q00 23 Dec, 2017 3.30.1330.30 Assigned
6az1S00 23 Dec, 2017 4.10.830.10 Assigned
6az1T01 23 Dec, 2017 Holding pen
6az1T02 23 Dec, 2017 1.10.287.10 Assigned
6az1U00 23 Dec, 2017 2.40.50.1000 Assigned
6az1V01 23 Dec, 2017 1.10.60.20 Assigned
6az1W00 23 Dec, 2017 Holding pen
6az1Y00 23 Dec, 2017 3.30.1230.20 Assigned
6az1Z00 23 Dec, 2017 3.30.70.3370 Assigned

UniProtKB Entries (30)

Accession Gene ID Taxon Description
E9BU11 E9BU11_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S24
A4IDS4 RSSA_LEIIN Leishmania infantum 40S ribosomal protein SA
E9BNF0 E9BNF0_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S2
E9BTC5 E9BTC5_LEIDB Leishmania donovani BPK282A1 Ubiquitin/ribosomal protein S27a, putative
E9BTF9 E9BTF9_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S18, putative
E9BQ25 E9BQ25_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S3, putative
Q9BIJ5 Q9BIJ5_LEIDO Leishmania donovani LACK protective antigen
E9BJZ5 E9BJZ5_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S17, putative
E9BFQ0 E9BFQ0_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S15, putative
E9BK95 E9BK95_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S26
E9BTJ0 E9BTJ0_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S9, putative
E9BJV7 E9BJV7_LEIDB Leishmania donovani BPK282A1 Ribosomal protein S29, putative
E9BH78 E9BH78_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S8
E9BAR6 E9BAR6_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S21, putative
E9BIH3 E9BIH3_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S33, putative
E9BUA2 E9BUA2_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S27-1, putative
Q9TXA6 Q9TXA6_LEIDO Leishmania donovani 40S ribosomal protein S11, putative
E9BHM6 E9BHM6_LEIDB Leishmania donovani BPK282A1 Ribosomal protein S25
E9BPR7 E9BPR7_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S13, putative
E9BBI6 E9BBI6_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S4
E9BMA8 E9BMA8_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S14
E9BR60 E9BR60_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S19 protein, putative
E9BAV6 E9BAV6_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S15A, putative
E9BBC0 E9BBC0_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S12
E9BFB6 E9BFB6_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S23, putative
O44012 RS6_LEIIN Leishmania infantum 40S ribosomal protein S6
E9BJI2 E9BJI2_LEIDB Leishmania donovani BPK282A1 Ribosomal protein S20, putative
E9BI96 E9BI96_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S16, putative
E9BTG4 E9BTG4_LEIDB Leishmania donovani BPK282A1 40S ribosomal protein S10, putative
A0A381MCG8 A0A381MCG8_LEIIN Leishmania infantum 40S ribosomal protein S5