PDB 5oik
PDB Information
| PDB | 5OIK |
| Method | ELECTRON MICROSCOPY |
| Host Organism | Escherichia coli BL21(DE3) |
| Gene Source | Homo sapiens |
| Primary Citation | Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp.
Nat. Struct. Mol. Biol.
|
| Header | Transcription |
| Released | 2017-07-18 |
| Resolution | 3.700 |
| CATH Insert Date | 14 Nov, 2017 |
PDB Images (31)
5oik
PDB 5oik
5oikA
PDB Chain 5oikA
5oikB
PDB Chain 5oikB
5oikC
PDB Chain 5oikC
5oikD
PDB Chain 5oikD
5oikE
PDB Chain 5oikE
5oikF
PDB Chain 5oikF
5oikG
PDB Chain 5oikG
5oikH
PDB Chain 5oikH
5oikI
PDB Chain 5oikI
5oikJ
PDB Chain 5oikJ
5oikK
PDB Chain 5oikK
5oikL
PDB Chain 5oikL
5oikN
PDB Chain 5oikN
5oikP
PDB Chain 5oikP
5oikT
PDB Chain 5oikT
5oikY
PDB Chain 5oikY
5oikZ
PDB Chain 5oikZ
5oikC01
CATH Domain 5oikC01
5oikC02
CATH Domain 5oikC02
5oikD00
CATH Domain 5oikD00
5oikE01
CATH Domain 5oikE01
5oikE02
CATH Domain 5oikE02
5oikF00
CATH Domain 5oikF00
5oikG01
CATH Domain 5oikG01
5oikG02
CATH Domain 5oikG02
5oikH01
CATH Domain 5oikH01
5oikJ00
CATH Domain 5oikJ00
5oikK00
CATH Domain 5oikK00
5oikL00
CATH Domain 5oikL00
5oikY01
CATH Domain 5oikY01
PDB Prints
PDB Chains (17)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| A | 14 Nov, 2017 | Holding pen |
| B | 14 Nov, 2017 | Holding pen |
| C | 14 Nov, 2017 | Chopped |
| D | 14 Nov, 2017 | Chopped |
| E | 14 Nov, 2017 | Chopped |
| F | 14 Nov, 2017 | Chopped |
| G | 14 Nov, 2017 | Chopped |
| H | 14 Nov, 2017 | Chopped |
| I | 14 Nov, 2017 | Holding pen |
| J | 14 Nov, 2017 | Chopped |
| K | 14 Nov, 2017 | Chopped |
| L | 14 Nov, 2017 | Chopped |
| N | 14 Nov, 2017 | Rejected |
| P | 14 Nov, 2017 | Rejected |
| T | 14 Nov, 2017 | Rejected |
| Y | 14 Nov, 2017 | Chopped |
| Z | 14 Nov, 2017 | Domchop review |
CATH Domains (13)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5oikC01 | 10 Dec, 2017 | 3.30.1360.10 | Assigned |
| 5oikC02 | 10 Dec, 2017 | 2.170.120.12 | Assigned |
| 5oikD00 | 10 Dec, 2017 | 1.20.1250.40 | Assigned |
| 5oikE01 | 10 Dec, 2017 | 3.40.1340.10 | Assigned |
| 5oikE02 | 10 Dec, 2017 | 3.90.940.20 | Assigned |
| 5oikF00 | 10 Dec, 2017 | 3.90.940.10 | Assigned |
| 5oikG01 | 10 Dec, 2017 | 3.30.1490.120 | Assigned |
| 5oikG02 | 10 Dec, 2017 | 2.40.50.140 | Assigned |
| 5oikH01 | 10 Dec, 2017 | 2.40.50.140 | Assigned |
| 5oikJ00 | 10 Dec, 2017 | 1.10.10.60 | Assigned |
| 5oikK00 | 10 Dec, 2017 | 3.30.1360.10 | Assigned |
| 5oikL00 | 10 Dec, 2017 | 2.20.28.30 | Assigned |
| 5oikY01 | 16 Dec, 2017 | 3.30.40.210 | Assigned |
UniProtKB Entries (14)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| Q32P78 | RPAB5_BOVIN | Bos taurus | DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
| F2Z4H3 | F2Z4H3_BOVIN | Bos taurus | DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
| O00267 | SPT5H_HUMAN | Homo sapiens | Transcription elongation factor SPT5 |
| Q3ZBC0 | RPAB4_BOVIN | Bos taurus | DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
| Q2T9T3 | RPAB1_BOVIN | Bos taurus | DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
| Q1JQ91 | Q1JQ91_BOVIN | Bos taurus | Polymerase (RNA) II (DNA directed) polypeptide D |
| G3MZY8 | G3MZY8_BOVIN | Bos taurus | DNA-directed RNA polymerase subunit |
| Q3T0Q3 | RPB3_BOVIN | Bos taurus | DNA-directed RNA polymerase II subunit RPB3 |
| Q32P79 | RPB11_BOVIN | Bos taurus | DNA-directed RNA polymerase II subunit RPB11 |
| A5PJW8 | A5PJW8_BOVIN | Bos taurus | DNA-directed RNA polymerase subunit beta |
| P63272 | SPT4H_HUMAN | Homo sapiens | Transcription elongation factor SPT4 |
| Q32P73 | RPB9_BOVIN | Bos taurus | DNA-directed RNA polymerase II subunit RPB9 |
| Q32PE0 | RPAB2_BOVIN | Bos taurus | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
| Q5E9B8 | RPB7_BOVIN | Bos taurus | DNA-directed RNA polymerase II subunit RPB7 |
