PDB 5lj3

PDB Links
Overview

PDB Information

PDB	5LJ3
Method	ELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation	Cryo-EM structure of the spliceosome immediately after branching. Galej, W.P., Wilkinson, M.E., Fica, S.M., Oubridge, C., Newman, A.J., Nagai, K. Nature
Header	Splicing
Released	2016-07-17
Resolution	3.800
CATH Insert Date	14 Aug, 2016

PDB Images (60)

5lj3

PDB 5lj3

5lj3A

PDB Chain 5lj3A

5lj3b

PDB Chain 5lj3b

5lj3C

PDB Chain 5lj3C

5lj3d

PDB Chain 5lj3d

5lj3D

PDB Chain 5lj3D

5lj3e

PDB Chain 5lj3e

5lj3E

PDB Chain 5lj3E

5lj3f

PDB Chain 5lj3f

5lj3F

PDB Chain 5lj3F

5lj3g

PDB Chain 5lj3g

5lj3G

PDB Chain 5lj3G

5lj3h

PDB Chain 5lj3h

5lj3H

PDB Chain 5lj3H

5lj3I

PDB Chain 5lj3I

5lj3j

PDB Chain 5lj3j

5lj3J

PDB Chain 5lj3J

5lj3k

PDB Chain 5lj3k

5lj3K

PDB Chain 5lj3K

5lj3l

PDB Chain 5lj3l

5lj3L

PDB Chain 5lj3L

5lj3m

PDB Chain 5lj3m

5lj3M

PDB Chain 5lj3M

5lj3n

PDB Chain 5lj3n

5lj3N

PDB Chain 5lj3N

5lj3O

PDB Chain 5lj3O

5lj3p

PDB Chain 5lj3p

5lj3P

PDB Chain 5lj3P

5lj3q

PDB Chain 5lj3q

5lj3r

PDB Chain 5lj3r

5lj3R

PDB Chain 5lj3R

5lj3S

PDB Chain 5lj3S

5lj3T

PDB Chain 5lj3T

5lj3U

PDB Chain 5lj3U

5lj3V

PDB Chain 5lj3V

5lj3W

PDB Chain 5lj3W

5lj3x

PDB Chain 5lj3x

5lj3Y

PDB Chain 5lj3Y

5lj3Z

PDB Chain 5lj3Z

5lj3b00

CATH Domain 5lj3b00

5lj3d00

CATH Domain 5lj3d00

5lj3e00

CATH Domain 5lj3e00

5lj3f00

CATH Domain 5lj3f00

5lj3F00

CATH Domain 5lj3F00

5lj3g00

CATH Domain 5lj3g00

5lj3G00

CATH Domain 5lj3G00

5lj3h00

CATH Domain 5lj3h00

5lj3j00

CATH Domain 5lj3j00

5lj3J00

CATH Domain 5lj3J00

5lj3k00

CATH Domain 5lj3k00

5lj3l00

CATH Domain 5lj3l00

5lj3m00

CATH Domain 5lj3m00

5lj3n00

CATH Domain 5lj3n00

5lj3O00

CATH Domain 5lj3O00

5lj3p00

CATH Domain 5lj3p00

5lj3q00

CATH Domain 5lj3q00

5lj3r00

CATH Domain 5lj3r00

5lj3R00

CATH Domain 5lj3R00

5lj3W00

CATH Domain 5lj3W00

5lj3Y00

CATH Domain 5lj3Y00

PDB Prints

PDB Chains (38)

Chain ID	Date inserted into CATH	CATH Status
A	15 Aug, 2016	Holding pen
b	15 Aug, 2016	Chopped
C	15 Aug, 2016	Holding pen
d	15 Aug, 2016	Chopped
D	15 Aug, 2016	Domchop review
e	15 Aug, 2016	Chopped
E	15 Aug, 2016	Rejected
f	15 Aug, 2016	Chopped
F	15 Aug, 2016	Chopped
g	15 Aug, 2016	Chopped
G	15 Aug, 2016	Chopped
h	15 Aug, 2016	Chopped
H	15 Aug, 2016	Domchop review
I	15 Aug, 2016	Rejected
j	15 Aug, 2016	Chopped
J	15 Aug, 2016	Chopped
k	15 Aug, 2016	Chopped
K	15 Aug, 2016	Domchop review
l	15 Aug, 2016	Chopped
L	15 Aug, 2016	Holding pen
m	15 Aug, 2016	Chopped
M	15 Aug, 2016	Holding pen
n	15 Aug, 2016	Chopped
N	15 Aug, 2016	Domchop allotted
O	15 Aug, 2016	Chopped
p	15 Aug, 2016	Chopped
P	15 Aug, 2016	Rejected
q	15 Aug, 2016	Chopped
r	15 Aug, 2016	Chopped
R	15 Aug, 2016	Chopped
S	15 Aug, 2016	Domchop review
T	15 Aug, 2016	Domchop review
U	15 Aug, 2016	Rejected
V	15 Aug, 2016	Rejected
W	15 Aug, 2016	Chopped
x	15 Aug, 2016	Rejected
Y	15 Aug, 2016	Chopped
Z	15 Aug, 2016	Rejected

CATH Domains (21)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5lj3b00	30 Nov, 2016		Holding pen
5lj3d00	01 Sep, 2016	2.30.30.100	Assigned
5lj3e00	01 Sep, 2016	2.30.30.100	Assigned
5lj3f00	01 Sep, 2016	2.30.30.100	Assigned
5lj3F00	29 Nov, 2016		Holding pen
5lj3g00	01 Sep, 2016	2.30.30.100	Assigned
5lj3G00	29 Nov, 2016		Holding pen
5lj3h00	30 Nov, 2016	2.30.30.100	Assigned
5lj3j00	01 Sep, 2016	2.30.30.100	Assigned
5lj3J00	14 Dec, 2017	2.130.10.10	Assigned
5lj3k00	30 Nov, 2016		Holding pen
5lj3l00	30 Nov, 2016	2.30.30.100	Assigned
5lj3m00	01 Sep, 2016	2.30.30.100	Assigned
5lj3n00	01 Sep, 2016	2.30.30.100	Assigned
5lj3O00	29 Nov, 2016		Write scan list
5lj3p00	01 Sep, 2016	2.30.30.100	Assigned
5lj3q00	01 Sep, 2016	2.30.30.100	Assigned
5lj3r00	01 Sep, 2016	2.30.30.100	Assigned
5lj3R00	29 Nov, 2016		Write scan list
5lj3W00	01 Sep, 2016		Write scan list
5lj3Y00	01 Sep, 2016	3.30.70.330	Assigned

UniProtKB Entries (25)

Accession	Gene ID	Taxon	Description
Q02260	SMD1_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D1
P21374	ISY1_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor ISY1
Q12046	CWC2_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CWC2
Q02260	SMD1_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D1
Q12417	PRP46_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor PRP46
Q08963	RU2A_YEAST	Saccharomyces cerevisiae S288C	U2 small nuclear ribonucleoprotein A'
Q12309	CLF1_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CLF1
Q04048	SYF1_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor SYF1
Q06217	SMD2_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D2
P40204	RUXG_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein G
Q12330	RUXE_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein E
P43321	SMD3_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D3
Q03375	CWC21_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CWC21
P54999	RUXF_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein F
P40567	MSL1_YEAST	Saccharomyces cerevisiae S288C	U2 small nuclear ribonucleoprotein B''
Q03654	CEF1_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CEF1
P40204	RUXG_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein G
P43321	SMD3_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D3
P33334	PRP8_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor 8
P40018	RSMB_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein-associated protein B
P40018	RSMB_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein-associated protein B
P54999	RUXF_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein F
P36048	SN114_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor SNU114
Q06217	SMD2_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D2
Q12330	RUXE_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein E