PDB Information

PDB5KAF
MethodX-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation
Structure of photosystem II and substrate binding at room temperature.
Young, I.D., Ibrahim, M., Chatterjee, R., Gul, S., Fuller, F.D., Koroidov, S., Brewster, A.S., Tran, R., Alonso-Mori, R., Kroll, T., Michels-Clark, T., Laksmono, H., Sierra, R.G., Stan, C.A., Hussein, R., Zhang, M., Douthit, L., Kubin, M., de Lichtenberg, C., Vo Pham, L., Nilsson, H., Cheah, M.H., Shevela, D., Saracini, C., Bean, M.A., Seuffert, I., Sokaras, D., Weng, T.C., Pastor, E., Weninger, C., Fransson, T., Lassalle, L., Brauer, P., Aller, P., Docker, P.T., Andi, B., Orville, A.M., Glownia, J.M., Nelson, S., Sikorski, M., Zhu, D., Hunter, M.S., Lane, T.J., Aquila, A., Koglin, J.E., Robinson, J., Liang, M., Boutet, S., Lyubimov, A.Y., Uervirojnangkoorn, M., Moriarty, N.W., Liebschner, D., Afonine, P.V., Waterman, D.G., Evans, G., Wernet, P., Dobbek, H., Weis, W.I., Brunger, A.T., Zwart, P.H., Adams, P.D., Zouni, A., Messinger, J., Bergmann, U., Sauter, N.K., Kern, J., Yachandra, V.K., Yano, J.
Nature
HeaderElectron Transport
Released2016-06-01
Resolution3.000
CATH Insert Date04 Dec, 2016

PDB Images (67)

PDB Prints

PDB Chains (40)

Chain ID Date inserted into CATH CATH Status
a 05 Dec, 2016 Chopped
A 05 Dec, 2016 Chopped
b 05 Dec, 2016 Chopped
B 05 Dec, 2016 Chopped
c 05 Dec, 2016 Chopped
C 05 Dec, 2016 Chopped
d 05 Dec, 2016 Chopped
D 05 Dec, 2016 Chopped
e 05 Dec, 2016 Chopped
E 05 Dec, 2016 Chopped
f 05 Dec, 2016 Rejected
F 05 Dec, 2016 Rejected
h 05 Dec, 2016 Chopped
H 05 Dec, 2016 Chopped
i 05 Dec, 2016 Rejected
I 05 Dec, 2016 Rejected
j 05 Dec, 2016 Rejected
J 05 Dec, 2016 Rejected
k 05 Dec, 2016 Rejected
K 05 Dec, 2016 Rejected
l 05 Dec, 2016 Rejected
L 05 Dec, 2016 Rejected
m 05 Dec, 2016 Rejected
M 05 Dec, 2016 Rejected
o 05 Dec, 2016 Chopped
O 05 Dec, 2016 Chopped
r 05 Dec, 2016 Rejected
R 05 Dec, 2016 Rejected
t 05 Dec, 2016 Rejected
T 05 Dec, 2016 Rejected
u 05 Dec, 2016 Chopped
U 05 Dec, 2016 Chopped
v 05 Dec, 2016 Chopped
V 05 Dec, 2016 Chopped
x 05 Dec, 2016 Rejected
X 05 Dec, 2016 Rejected
y 05 Dec, 2016 Rejected
Y 05 Dec, 2016 Rejected
z 05 Dec, 2016 Chopped
Z 05 Dec, 2016 Chopped

CATH Domains (26)

Domain ID Date inserted into CATH Superfamily CATH Status
5kafa00 09 Dec, 2016 Holding pen
5kafA00 09 Dec, 2016 Holding pen
5kafb01 09 Dec, 2016 Holding pen
5kafB01 09 Dec, 2016 Holding pen
5kafb02 09 Dec, 2016 3.10.680.10 Assigned
5kafB02 09 Dec, 2016 3.10.680.10 Assigned
5kafc01 09 Dec, 2016 Holding pen
5kafC01 09 Dec, 2016 Holding pen
5kafc02 09 Dec, 2016 1.10.10.670 Assigned
5kafC02 09 Dec, 2016 1.10.10.670 Assigned
5kafd00 09 Dec, 2016 Holding pen
5kafD00 09 Dec, 2016 Holding pen
5kafe00 09 Dec, 2016 1.20.5.860 Assigned
5kafE00 09 Dec, 2016 1.20.5.860 Assigned
5kafh01 09 Dec, 2016 1.20.5.880 Assigned
5kafH01 09 Dec, 2016 1.20.5.880 Assigned
5kafo01 09 Dec, 2016 2.40.160.30 Assigned
5kafO01 09 Dec, 2016 2.40.160.30 Assigned
5kafo02 09 Dec, 2016 3.30.2050.10 Assigned
5kafO02 09 Dec, 2016 3.30.2050.10 Assigned
5kafu01 09 Dec, 2016 1.10.150.320 Assigned
5kafU01 09 Dec, 2016 1.10.150.320 Assigned
5kafv00 09 Dec, 2016 1.10.760.10 Assigned
5kafV00 09 Dec, 2016 1.10.760.10 Assigned
5kafz00 09 Dec, 2016 1.10.287.740 Assigned
5kafZ00 09 Dec, 2016 1.10.287.740 Assigned

UniProtKB Entries (24)

Accession Gene ID Taxon Description
Q8DIP0 PSBE_THEEB Thermosynechococcus elongatus BP-1 Cytochrome b559 subunit alpha
P0A431 PSBO_THEEB Thermosynechococcus elongatus BP-1 Photosystem II manganese-stabilizing polypeptide
Q8DIQ1 PSBB_THEEB Thermosynechococcus elongatus BP-1 Photosystem II CP47 reaction center protein
Q8CM25 PSBD_THEEB Thermosynechococcus elongatus BP-1 Photosystem II D2 protein
P0A444 PSBA1_THEEB Thermosynechococcus elongatus BP-1 Photosystem II protein D1 1
Q8DIQ1 PSBB_THEEB Thermosynechococcus elongatus BP-1 Photosystem II CP47 reaction center protein
Q9F1R6 PSBX_THEEB Thermosynechococcus elongatus BP-1 Photosystem II reaction center X protein
Q8DIP0 PSBE_THEEB Thermosynechococcus elongatus BP-1 Cytochrome b559 subunit alpha
Q9F1L5 PSBU_THEEB Thermosynechococcus elongatus BP-1 Photosystem II 12 kDa extrinsic protein
Q8DIF8 PSBC_THEEB Thermosynechococcus elongatus BP-1 Photosystem II CP43 reaction center protein
Q9F1R6 PSBX_THEEB Thermosynechococcus elongatus BP-1 Photosystem II reaction center X protein
Q9F1L5 PSBU_THEEB Thermosynechococcus elongatus BP-1 Photosystem II 12 kDa extrinsic protein
P0A386 CY550_THEEB Thermosynechococcus elongatus BP-1 Cytochrome c-550
Q8DJ43 PSBH_THEEB Thermosynechococcus elongatus BP-1 Photosystem II reaction center protein H
P0A386 CY550_THEEB Thermosynechococcus elongatus BP-1 Cytochrome c-550
Q8DHJ2 PSBZ_THEEB Thermosynechococcus elongatus BP-1 Photosystem II reaction center protein Z
Q8DHJ2 PSBZ_THEEB Thermosynechococcus elongatus BP-1 Photosystem II reaction center protein Z
P0A444 PSBA1_THEEB Thermosynechococcus elongatus BP-1 Photosystem II protein D1 1
Q8CM25 PSBD_THEEB Thermosynechococcus elongatus BP-1 Photosystem II D2 protein
P0A431 PSBO_THEEB Thermosynechococcus elongatus BP-1 Photosystem II manganese-stabilizing polypeptide
Q8DJ43 PSBH_THEEB Thermosynechococcus elongatus BP-1 Photosystem II reaction center protein H
Q8DIF8 PSBC_THEEB Thermosynechococcus elongatus BP-1 Photosystem II CP43 reaction center protein
P59087 PSBJ_THEEB Thermosynechococcus elongatus BP-1 Photosystem II reaction center protein J
P59087 PSBJ_THEEB Thermosynechococcus elongatus BP-1 Photosystem II reaction center protein J