PDB 5d4d

PDB Information

PDB5D4D
MethodX-RAY DIFFRACTION
Host OrganismEscherichia coli
Gene SourceThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Primary Citation
The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA.
Bird, J.G., Zhang, Y., Tian, Y., Panova, N., Barvik, I., Greene, L., Liu, M., Buckley, B., Krasny, L., Lee, J.K., Kaplan, C.D., Ebright, R.H., Nickels, B.E.
Nature
HeaderTranscription/Dna
Released2015-08-07
Resolution3.000
CATH Insert Date24 Jul, 2016

PDB Images (27)

PDB Prints

PDB Chains (16)

Chain ID Date inserted into CATH CATH Status
A 25 Jul, 2016 Chopped
B 25 Jul, 2016 Chopped
C 25 Jul, 2016 Holding pen
D 25 Jul, 2016 Holding pen
E 25 Jul, 2016 Chopped
F 25 Jul, 2016 Holding pen
G 25 Jul, 2016 Rejected
H 25 Jul, 2016 Rejected
K 25 Jul, 2016 Chopped
L 25 Jul, 2016 Chopped
M 25 Jul, 2016 Holding pen
N 25 Jul, 2016 Holding pen
O 25 Jul, 2016 Chopped
P 25 Jul, 2016 Holding pen
R 25 Jul, 2016 Rejected
S 25 Jul, 2016 Rejected

CATH Domains (10)

Domain ID Date inserted into CATH Superfamily CATH Status
5d4dA01 01 Sep, 2016 3.30.1360.10 Assigned
5d4dA02 01 Sep, 2016 2.170.120.12 Assigned
5d4dB01 01 Sep, 2016 3.30.1360.10 Assigned
5d4dB02 01 Sep, 2016 2.170.120.12 Assigned
5d4dE00 01 Sep, 2016 3.90.940.10 Assigned
5d4dK01 01 Sep, 2016 3.30.1360.10 Assigned
5d4dK02 01 Sep, 2016 2.170.120.12 Assigned
5d4dL01 01 Sep, 2016 3.30.1360.10 Assigned
5d4dL02 01 Sep, 2016 2.170.120.12 Assigned
5d4dO00 01 Sep, 2016 3.90.940.10 Assigned

UniProtKB Entries (12)

Accession Gene ID Taxon Description
Q8RQE9 RPOB_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit beta
Q5SHR6 RPOA_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit alpha
Q5SHR6 RPOA_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit alpha
Q8RQE9 RPOB_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit beta
Q8RQE8 RPOC_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit beta'
Q8RQE7 RPOZ_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit omega
Q8RQE8 RPOC_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit beta'
Q5SHR6 RPOA_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit alpha
Q5SKW1 Q5SKW1_THET8 Thermus thermophilus HB8 RNA polymerase sigma factor SigA
Q5SHR6 RPOA_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit alpha
Q8RQE7 RPOZ_THET8 Thermus thermophilus HB8 DNA-directed RNA polymerase subunit omega
Q5SKW1 Q5SKW1_THET8 Thermus thermophilus HB8 RNA polymerase sigma factor SigA