PDB 5c0x
PDB Information
| PDB | 5C0X |
| Method | X-RAY DIFFRACTION |
| Host Organism | Escherichia coli BL21(DE3) |
| Gene Source | Saccharomyces cerevisiae S288c |
| Primary Citation | RNA degradation paths in a 12-subunit nuclear exosome complex.
Nature
|
| Header | Hydrolase/Rna |
| Released | 2015-06-12 |
| Resolution | 3.810 |
| CATH Insert Date | 16 Aug, 2015 |
PDB Images (32)
5c0x
PDB 5c0x
5c0xA
PDB Chain 5c0xA
5c0xB
PDB Chain 5c0xB
5c0xC
PDB Chain 5c0xC
5c0xD
PDB Chain 5c0xD
5c0xE
PDB Chain 5c0xE
5c0xF
PDB Chain 5c0xF
5c0xG
PDB Chain 5c0xG
5c0xH
PDB Chain 5c0xH
5c0xI
PDB Chain 5c0xI
5c0xJ
PDB Chain 5c0xJ
5c0xK
PDB Chain 5c0xK
5c0xR
PDB Chain 5c0xR
5c0xA00
CATH Domain 5c0xA00
5c0xB00
CATH Domain 5c0xB00
5c0xC00
CATH Domain 5c0xC00
5c0xD00
CATH Domain 5c0xD00
5c0xE00
CATH Domain 5c0xE00
5c0xF00
CATH Domain 5c0xF00
5c0xG01
CATH Domain 5c0xG01
5c0xG02
CATH Domain 5c0xG02
5c0xG03
CATH Domain 5c0xG03
5c0xH01
CATH Domain 5c0xH01
5c0xH02
CATH Domain 5c0xH02
5c0xI01
CATH Domain 5c0xI01
5c0xI02
CATH Domain 5c0xI02
5c0xJ01
CATH Domain 5c0xJ01
5c0xJ02
CATH Domain 5c0xJ02
5c0xJ03
CATH Domain 5c0xJ03
5c0xJ04
CATH Domain 5c0xJ04
5c0xJ05
CATH Domain 5c0xJ05
5c0xK01
CATH Domain 5c0xK01
PDB Prints
PDB Chains (12)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| A | 17 Aug, 2015 | Chopped |
| B | 17 Aug, 2015 | Chopped |
| C | 17 Aug, 2015 | Chopped |
| D | 17 Aug, 2015 | Chopped |
| E | 17 Aug, 2015 | Chopped |
| F | 17 Aug, 2015 | Chopped |
| G | 17 Aug, 2015 | Chopped |
| H | 17 Aug, 2015 | Chopped |
| I | 17 Aug, 2015 | Chopped |
| J | 17 Aug, 2015 | Chopped |
| K | 17 Aug, 2015 | Chopped |
| R | 17 Aug, 2015 | Rejected |
CATH Domains (19)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5c0xA00 | 24 Aug, 2015 | 3.30.230.70 | Assigned |
| 5c0xB00 | 24 Aug, 2015 | 3.30.230.70 | Assigned |
| 5c0xC00 | 24 Aug, 2015 | 3.30.230.70 | Assigned |
| 5c0xD00 | 24 Aug, 2015 | 3.30.230.70 | Assigned |
| 5c0xE00 | 24 Aug, 2015 | 3.30.230.70 | Assigned |
| 5c0xF00 | 24 Aug, 2015 | 3.30.230.70 | Assigned |
| 5c0xG01 | 24 Aug, 2015 | 2.40.50.100 | Assigned |
| 5c0xG02 | 24 Aug, 2015 | 2.40.50.140 | Assigned |
| 5c0xG03 | 24 Aug, 2015 | 3.30.1370.10 | Assigned |
| 5c0xH01 | 24 Aug, 2015 | 2.40.50.100 | Assigned |
| 5c0xH02 | 24 Aug, 2015 | Holding pen | |
| 5c0xI01 | 24 Aug, 2015 | 2.40.50.880 | Assigned |
| 5c0xI02 | 24 Aug, 2015 | 2.40.50.140 | Assigned |
| 5c0xJ01 | 24 Aug, 2015 | Holding pen | |
| 5c0xJ02 | 24 Aug, 2015 | Holding pen | |
| 5c0xJ03 | 24 Aug, 2015 | 2.40.50.700 | Assigned |
| 5c0xJ04 | 24 Aug, 2015 | Holding pen | |
| 5c0xJ05 | 24 Aug, 2015 | 2.40.50.140 | Assigned |
| 5c0xK01 | 16 Jan, 2018 | 3.30.420.10 | Assigned |
UniProtKB Entries (11)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| P25359 | RRP43_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP43 |
| Q08285 | RRP40_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP40 |
| Q12149 | RRP6_YEAST | Saccharomyces cerevisiae S288C | Exosome complex exonuclease RRP6 |
| P38792 | RRP4_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP4 |
| Q05636 | RRP45_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP45 |
| Q12277 | RRP42_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP42 |
| P48240 | MTR3_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component MTR3 |
| Q08162 | RRP44_YEAST | Saccharomyces cerevisiae S288C | Exosome complex exonuclease DIS3 |
| P53859 | CSL4_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component CSL4 |
| P46948 | RRP41_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component SKI6 |
| P53256 | RRP46_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP46 |
