PDB 4ifd

PDB Information

PDB4IFD
MethodX-RAY DIFFRACTION
Host OrganismEscherichia coli
Gene SourceSaccharomyces cerevisiae
Primary Citation
Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex.
Makino, D.L., Baumgartner, M., Conti, E.
Nature
HeaderHydrolase/Rna
Released2012-12-14
Resolution2.810
CATH Insert Date28 Mar, 2013

PDB Images (33)

PDB Prints

PDB Chains (12)

Chain ID Date inserted into CATH CATH Status
A 28 Mar, 2013 Chopped
B 28 Mar, 2013 Chopped
C 28 Mar, 2013 Chopped
D 28 Mar, 2013 Chopped
E 28 Mar, 2013 Chopped
F 28 Mar, 2013 Chopped
G 28 Mar, 2013 Chopped
H 28 Mar, 2013 Chopped
I 28 Mar, 2013 Chopped
J 28 Mar, 2013 Chopped
K 28 Mar, 2013 Chopped
R 28 Mar, 2013 Rejected

CATH Domains (20)

Domain ID Date inserted into CATH Superfamily CATH Status
4ifdA00 14 Jun, 2013 3.30.230.70 Assigned
4ifdB00 10 Apr, 2013 3.30.230.70 Assigned
4ifdC00 02 Aug, 2013 3.30.230.70 Assigned
4ifdD00 25 Apr, 2013 3.30.230.70 Assigned
4ifdE00 14 Aug, 2013 3.30.230.70 Assigned
4ifdF00 02 Aug, 2013 3.30.230.70 Assigned
4ifdG01 01 Jul, 2013 2.40.50.100 Assigned
4ifdG02 01 Jul, 2013 2.40.50.140 Assigned
4ifdG03 01 Jul, 2013 3.30.1370.10 Assigned
4ifdH01 25 Oct, 2013 2.40.50.100 Assigned
4ifdH02 25 Oct, 2013 Holding pen
4ifdI01 23 Oct, 2013 2.40.50.880 Assigned
4ifdI02 23 Oct, 2013 2.40.50.140 Assigned
4ifdJ01 18 Nov, 2013 Cathedral cath submit
4ifdJ02 18 Nov, 2013 Holding pen
4ifdJ03 18 Nov, 2013 2.40.50.700 Assigned
4ifdJ04 18 Nov, 2013 Holding pen
4ifdJ05 18 Nov, 2013 2.40.50.140 Assigned
4ifdK01 25 Oct, 2013 1.20.5.220 Assigned
4ifdK02 25 Oct, 2013 6.10.250.2660 Assigned

UniProtKB Entries (11)

Accession Gene ID Taxon Description
Q08285 RRP40_YEAST Saccharomyces cerevisiae S288C Exosome complex component RRP40
Q12277 RRP42_YEAST Saccharomyces cerevisiae S288C Exosome complex component RRP42
Q12149 RRP6_YEAST Saccharomyces cerevisiae S288C Exosome complex exonuclease RRP6
Q08162 RRP44_YEAST Saccharomyces cerevisiae S288C Exosome complex exonuclease DIS3
P38792 RRP4_YEAST Saccharomyces cerevisiae S288C Exosome complex component RRP4
P53256 RRP46_YEAST Saccharomyces cerevisiae S288C Exosome complex component RRP46
Q05636 RRP45_YEAST Saccharomyces cerevisiae S288C Exosome complex component RRP45
P53859 CSL4_YEAST Saccharomyces cerevisiae S288C Exosome complex component CSL4
P46948 RRP41_YEAST Saccharomyces cerevisiae S288C Exosome complex component SKI6
P25359 RRP43_YEAST Saccharomyces cerevisiae S288C Exosome complex component RRP43
P48240 MTR3_YEAST Saccharomyces cerevisiae S288C Exosome complex component MTR3