PDB 3jcm

PDB Links
Overview

PDB Information

PDB	3JCM
Method	ELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation	The 3.8 angstrom structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis Wan, R., Yan, C., Bai, R., Wang, L., Huang, M., Wong, C.C., Shi, Y. Science
Header	Transcription
Released	2015-12-23
Resolution	3.800
CATH Insert Date	10 Apr, 2016

PDB Images (82)

3jcm

PDB 3jcm

3jcma

PDB Chain 3jcma

3jcmA

PDB Chain 3jcmA

3jcmb

PDB Chain 3jcmb

3jcmB

PDB Chain 3jcmB

3jcmc

PDB Chain 3jcmc

3jcmC

PDB Chain 3jcmC

3jcmd

PDB Chain 3jcmd

3jcmD

PDB Chain 3jcmD

3jcme

PDB Chain 3jcme

3jcmE

PDB Chain 3jcmE

3jcmf

PDB Chain 3jcmf

3jcmF

PDB Chain 3jcmF

3jcmg

PDB Chain 3jcmg

3jcmG

PDB Chain 3jcmG

3jcmh

PDB Chain 3jcmh

3jcmH

PDB Chain 3jcmH

3jcmI

PDB Chain 3jcmI

3jcmJ

PDB Chain 3jcmJ

3jcmK

PDB Chain 3jcmK

3jcmL

PDB Chain 3jcmL

3jcmM

PDB Chain 3jcmM

3jcmN

PDB Chain 3jcmN

3jcmO

PDB Chain 3jcmO

3jcmP

PDB Chain 3jcmP

3jcmQ

PDB Chain 3jcmQ

3jcmR

PDB Chain 3jcmR

3jcmS

PDB Chain 3jcmS

3jcmT

PDB Chain 3jcmT

3jcmU

PDB Chain 3jcmU

3jcmV

PDB Chain 3jcmV

3jcmW

PDB Chain 3jcmW

3jcmX

PDB Chain 3jcmX

3jcmY

PDB Chain 3jcmY

3jcmZ

PDB Chain 3jcmZ

3jcma00

CATH Domain 3jcma00

3jcmb00

CATH Domain 3jcmb00

3jcmB01

CATH Domain 3jcmB01

3jcmB02

CATH Domain 3jcmB02

3jcmc00

CATH Domain 3jcmc00

3jcmd00

CATH Domain 3jcmd00

3jcme00

CATH Domain 3jcme00

3jcmf00

CATH Domain 3jcmf00

3jcmg00

CATH Domain 3jcmg00

3jcmG01

CATH Domain 3jcmG01

3jcmh00

CATH Domain 3jcmh00

3jcmH01

CATH Domain 3jcmH01

3jcmH02

CATH Domain 3jcmH02

3jcmH03

CATH Domain 3jcmH03

3jcmH04

CATH Domain 3jcmH04

3jcmH05

CATH Domain 3jcmH05

3jcmH06

CATH Domain 3jcmH06

3jcmI01

CATH Domain 3jcmI01

3jcmI02

CATH Domain 3jcmI02

3jcmI03

CATH Domain 3jcmI03

3jcmJ00

CATH Domain 3jcmJ00

3jcmL00

CATH Domain 3jcmL00

3jcmM00

CATH Domain 3jcmM00

3jcmN01

CATH Domain 3jcmN01

3jcmN02

CATH Domain 3jcmN02

3jcmN03

CATH Domain 3jcmN03

3jcmN04

CATH Domain 3jcmN04

3jcmN05

CATH Domain 3jcmN05

3jcmN06

CATH Domain 3jcmN06

3jcmN07

CATH Domain 3jcmN07

3jcmN08

CATH Domain 3jcmN08

3jcmN09

CATH Domain 3jcmN09

3jcmN10

CATH Domain 3jcmN10

3jcmN11

CATH Domain 3jcmN11

3jcmN12

CATH Domain 3jcmN12

3jcmO00

CATH Domain 3jcmO00

3jcmP00

CATH Domain 3jcmP00

3jcmQ00

CATH Domain 3jcmQ00

3jcmR00

CATH Domain 3jcmR00

3jcmS00

CATH Domain 3jcmS00

3jcmT00

CATH Domain 3jcmT00

3jcmU00

CATH Domain 3jcmU00

3jcmV00

CATH Domain 3jcmV00

3jcmW00

CATH Domain 3jcmW00

3jcmX00

CATH Domain 3jcmX00

3jcmY00

CATH Domain 3jcmY00

3jcmZ00

CATH Domain 3jcmZ00

PDB Prints

PDB Chains (34)

Chain ID	Date inserted into CATH	CATH Status
a	11 Apr, 2016	Chopped
A	11 Apr, 2016	Holding pen
b	11 Apr, 2016	Chopped
B	11 Apr, 2016	Chopped
c	11 Apr, 2016	Chopped
C	11 Apr, 2016	Rejected
d	11 Apr, 2016	Chopped
D	11 Apr, 2016	Rejected
e	11 Apr, 2016	Chopped
E	11 Apr, 2016	Rejected
f	11 Apr, 2016	Chopped
F	11 Apr, 2016	Rejected
g	11 Apr, 2016	Chopped
G	11 Apr, 2016	Chopped
h	11 Apr, 2016	Chopped
H	11 Apr, 2016	Chopped
I	11 Apr, 2016	Chopped
J	11 Apr, 2016	Chopped
K	11 Apr, 2016	Domchop review
L	11 Apr, 2016	Chopped
M	11 Apr, 2016	Chopped
N	11 Apr, 2016	Chopped
O	11 Apr, 2016	Chopped
P	11 Apr, 2016	Chopped
Q	11 Apr, 2016	Chopped
R	11 Apr, 2016	Chopped
S	11 Apr, 2016	Chopped
T	11 Apr, 2016	Chopped
U	11 Apr, 2016	Chopped
V	11 Apr, 2016	Chopped
W	11 Apr, 2016	Chopped
X	11 Apr, 2016	Chopped
Y	11 Apr, 2016	Chopped
Z	11 Apr, 2016	Chopped

CATH Domains (47)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
3jcma00	28 Apr, 2016	2.30.30.100	Assigned
3jcmb00	28 Apr, 2016	2.30.30.100	Assigned
3jcmB01	07 Mar, 2018		Write scan list
3jcmB02	07 Mar, 2018		Write scan list
3jcmc00	28 Apr, 2016	2.30.30.100	Assigned
3jcmd00	28 Apr, 2016	2.30.30.100	Assigned
3jcme00	28 Apr, 2016	2.30.30.100	Assigned
3jcmf00	28 Apr, 2016	2.30.30.100	Assigned
3jcmg00	28 Apr, 2016	2.30.30.100	Assigned
3jcmG01	25 Jun, 2018		Write scan list
3jcmh00	28 Apr, 2016	2.30.30.100	Assigned
3jcmH01	21 Feb, 2018		Write scan list
3jcmH02	21 Feb, 2018		Write scan list
3jcmH03	21 Feb, 2018		Write scan list
3jcmH04	21 Feb, 2018	3.30.70.870	Assigned
3jcmH05	21 Feb, 2018		Write scan list
3jcmH06	21 Feb, 2018		Write scan list
3jcmI01	09 May, 2018		Holding pen
3jcmI02	09 May, 2018		Holding pen
3jcmI03	09 May, 2018		Holding pen
3jcmJ00	28 Apr, 2016	2.30.30.100	Assigned
3jcmL00	28 Apr, 2016	3.40.30.10	Assigned
3jcmM00	28 Apr, 2016	3.30.1330.30	Assigned
3jcmN01	31 May, 2018	3.40.50.300	Assigned
3jcmN02	31 May, 2018	3.40.50.300	Assigned
3jcmN03	31 May, 2018	1.10.10.10	Assigned
3jcmN04	31 May, 2018	1.10.3380.10	Assigned
3jcmN05	31 May, 2018	1.10.150.20	Assigned
3jcmN06	31 May, 2018	2.60.40.150	Assigned
3jcmN07	31 May, 2018	3.40.50.300	Assigned
3jcmN08	31 May, 2018	3.40.50.300	Assigned
3jcmN09	31 May, 2018	1.10.10.10	Assigned
3jcmN10	31 May, 2018	1.10.3380.10	Assigned
3jcmN11	31 May, 2018	1.10.150.20	Assigned
3jcmN12	31 May, 2018	2.60.40.150	Assigned
3jcmO00	30 Nov, 2016		Holding pen
3jcmP00	28 Apr, 2016	2.30.30.100	Assigned
3jcmQ00	28 Apr, 2016	2.30.30.100	Assigned
3jcmR00	28 Apr, 2016	2.30.30.100	Assigned
3jcmS00	30 Nov, 2016		Holding pen
3jcmT00	28 Apr, 2016	2.30.30.100	Assigned
3jcmU00	28 Apr, 2016	2.30.30.100	Assigned
3jcmV00	28 Apr, 2016	2.30.30.100	Assigned
3jcmW00	28 Apr, 2016	2.30.30.100	Assigned
3jcmX00	28 Apr, 2016	2.30.30.100	Assigned
3jcmY00	28 Apr, 2016	2.30.30.100	Assigned
3jcmZ00	28 Apr, 2016	2.30.30.100	Assigned

UniProtKB Entries (29)

Accession	Gene ID	Taxon	Description
Q02260	SMD1_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D1
Q06406	LSM6_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm6
Q06217	SMD2_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D2
P33334	PRP8_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor 8
P38203	LSM2_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm2
P32639	BRR2_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing helicase BRR2
P49704	PRP31_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-processing factor 31
P36048	SN114_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor SNU114
Q06217	SMD2_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D2
P57743	LSM3_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm3
P19735	PRP6_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor 6
P40204	RUXG_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein G
P40018	RSMB_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein-associated protein B
P43321	SMD3_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D3
P40089	LSM5_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm5
P40070	LSM4_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm4
P20053	PRP4_YEAST	Saccharomyces cerevisiae S288C	U4/U6 small nuclear ribonucleoprotein PRP4
P39990	SNU13_YEAST	Saccharomyces cerevisiae S288C	13 kDa ribonucleoprotein-associated protein
P43321	SMD3_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D3
P53905	LSM7_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm7
Q02260	SMD1_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D1
P54999	RUXF_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein F
P40018	RSMB_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein-associated protein B
P47093	LSM8_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm8
Q12330	RUXE_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein E
P54999	RUXF_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein F
Q06819	DIB1_YEAST	Saccharomyces cerevisiae S288C	Spliceosomal protein DIB1
P40204	RUXG_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein G
Q12330	RUXE_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein E