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CATH Superfamily 3.30.70.1820

L1 transposable element, RRM domain

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
L1 transposable element, RRM domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.

Superfamily: L1 transposable element, RRM domain

According to the literature, members of the structural domains which comprise this superfamily correspond to a conserved component in the protein ORF1 of the long interspersed nuclear element 1 (LINE-1 or L1) retrotransposon. This domain is designated RRM, which stands for RNA recognition motif, and is involved in RNA binding. Cooperation between this RRM domain and the C-terminal domain is required to achieve this, despite the fact that this two domains do not contact each other PMID:21822284.

GO Diversity

Unique GO annotations
27 Unique GO terms

EC Diversity

Unique EC annotations
0 Unique EC terms

Species Diversity

Unique species annotations
246 Unique species

Sequence/Structure Diversity

Overview of the sequence / structure diversity of this superfamily compared to other superfamilies in CATH. Click on the chart to view the data in more detail.

Superfamily Summary

A general summary of information for this superfamily.
Structures
Domains: 12
Domain clusters (>95% seq id): 2
Domain clusters (>35% seq id): 1
Unique PDBs: 5
Alignments
Structural Clusters (5A): 1
Structural Clusters (9A): 1
FunFam Clusters: 19
Function
Unique EC:
Unique GO: 27
Taxonomy
Unique Species: 246