# STOCKHOLM 1.0
#=GF ID 3.90.1110.10/FF/000013
#=GF DE DNA-directed RNA polymerase subunit beta
#=GF AC 3.90.1110.10/FF/000013
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 88.481
#=GS Q583H5/229-401      AC Q583H5
#=GS Q583H5/229-401      OS Trypanosoma brucei brucei TREU927
#=GS Q583H5/229-401      DE DNA-directed RNA polymerase subunit beta
#=GS Q583H5/229-401      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q583H5/229-401      DR GO; GO:0005634; GO:0005665; 
#=GS Q4Q6P8/225-396      AC Q4Q6P8
#=GS Q4Q6P8/225-396      OS Leishmania major
#=GS Q4Q6P8/225-396      DE DNA-directed RNA polymerase subunit beta
#=GS Q4Q6P8/225-396      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS Q4Q6P8/225-396      DR GO; GO:0005665; 
#=GS A0CUT2/227-401      AC A0CUT2
#=GS A0CUT2/227-401      OS Paramecium tetraurelia
#=GS A0CUT2/227-401      DE DNA-directed RNA polymerase subunit beta
#=GS A0CUT2/227-401      DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A2E7H8/245-383      AC A2E7H8
#=GS A2E7H8/245-383      OS Trichomonas vaginalis
#=GS A2E7H8/245-383      DE DNA-directed RNA polymerase subunit beta
#=GS A2E7H8/245-383      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS Q0U9V8/240-407      AC Q0U9V8
#=GS Q0U9V8/240-407      OS Parastagonospora nodorum SN15
#=GS Q0U9V8/240-407      DE DNA-directed RNA polymerase subunit beta
#=GS Q0U9V8/240-407      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora; Parastagonospora nodorum; 
#=GS A0A061IX55/226-397  AC A0A061IX55
#=GS A0A061IX55/226-397  OS Trypanosoma rangeli SC58
#=GS A0A061IX55/226-397  DE DNA-directed RNA polymerase subunit beta
#=GS A0A061IX55/226-397  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Herpetosoma; Trypanosoma rangeli; 
#=GS K2N506/234-405      AC K2N506
#=GS K2N506/234-405      OS Trypanosoma cruzi marinkellei
#=GS K2N506/234-405      DE DNA-directed RNA polymerase subunit beta
#=GS K2N506/234-405      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; Trypanosoma cruzi marinkellei; 
#=GS A0A0M9FQH0/228-399  AC A0A0M9FQH0
#=GS A0A0M9FQH0/228-399  OS Leptomonas pyrrhocoris
#=GS A0A0M9FQH0/228-399  DE DNA-directed RNA polymerase subunit beta
#=GS A0A0M9FQH0/228-399  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leptomonas; Leptomonas pyrrhocoris; 
#=GS A0A1G4IGJ6/229-401  AC A0A1G4IGJ6
#=GS A0A1G4IGJ6/229-401  OS Trypanosoma equiperdum
#=GS A0A1G4IGJ6/229-401  DE DNA-directed RNA polymerase subunit beta
#=GS A0A1G4IGJ6/229-401  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma equiperdum; 
#=GS A4HIZ1/225-396      AC A4HIZ1
#=GS A4HIZ1/225-396      OS Leishmania braziliensis
#=GS A4HIZ1/225-396      DE DNA-directed RNA polymerase subunit beta
#=GS A4HIZ1/225-396      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; 
#=GS A0A0N1PFE3/228-399  AC A0A0N1PFE3
#=GS A0A0N1PFE3/228-399  OS Leptomonas seymouri
#=GS A0A0N1PFE3/228-399  DE DNA-directed RNA polymerase subunit beta
#=GS A0A0N1PFE3/228-399  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leptomonas; Leptomonas seymouri; 
#=GS A4I6A8/221-392      AC A4I6A8
#=GS A4I6A8/221-392      OS Leishmania infantum
#=GS A4I6A8/221-392      DE DNA-directed RNA polymerase subunit beta
#=GS A4I6A8/221-392      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum; 
#=GS E9B1G4/225-396      AC E9B1G4
#=GS E9B1G4/225-396      OS Leishmania mexicana MHOM/GT/2001/U1103
#=GS E9B1G4/225-396      DE DNA-directed RNA polymerase subunit beta
#=GS E9B1G4/225-396      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania mexicana species complex; Leishmania mexicana; 
#=GS A0A088RWS0/225-396  AC A0A088RWS0
#=GS A0A088RWS0/225-396  OS Leishmania panamensis
#=GS A0A088RWS0/225-396  DE DNA-directed RNA polymerase subunit beta
#=GS A0A088RWS0/225-396  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania panamensis; 
#=GS E9BMD9/221-392      AC E9BMD9
#=GS E9BMD9/221-392      OS Leishmania donovani BPK282A1
#=GS E9BMD9/221-392      DE DNA-directed RNA polymerase subunit beta
#=GS E9BMD9/221-392      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; 
#=GS A0A3S7X436/221-392  AC A0A3S7X436
#=GS A0A3S7X436/221-392  OS Leishmania donovani
#=GS A0A3S7X436/221-392  DE DNA-directed RNA polymerase subunit beta
#=GS A0A3S7X436/221-392  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; 
#=GS A0A3P3ZDC0/225-396  AC A0A3P3ZDC0
#=GS A0A3P3ZDC0/225-396  OS Leishmania braziliensis MHOM/BR/75/M2904
#=GS A0A3P3ZDC0/225-396  DE DNA-directed RNA polymerase subunit beta
#=GS A0A3P3ZDC0/225-396  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; 
#=GS A0DEB3/227-401      AC A0DEB3
#=GS A0DEB3/227-401      OS Paramecium tetraurelia
#=GS A0DEB3/227-401      DE DNA-directed RNA polymerase subunit beta
#=GS A0DEB3/227-401      DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GF SQ 18
Q583H5/229-401              AFTRPKG---LLCEIKSIVEGSLNKPRTLQILMPYKKSG-PGHG----YENLLCRVAQMD--ELIPLFVLFRALDMGSDKEILQTVVPDLKDV---AMLEMLRGSMEDASTLEIFTRDEALWFIGKRLG-KQDSR--ENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDTD
Q4Q6P8/225-396              -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMQYRNKG-PGSG----FENLMCRVAQMD--ETIPLFVLFRAMDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREEALGYIGRRLG-KQDAM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
A0CUT2/227-401              VFKSKIVNKPWVAEIRSQPD-LFSNPNVFKVELRYIQNT-P---------VIRCSVKQFNSTQGIPLFTLFRALGISSDQEILERIVYNLEDEFMGPMLEMLYGSLQEGGEYE--DEELCLRWIGNKIK-KAENQDPETLIQEAKKLINKNILPHIGVSTESRDRKAYFLGYIVHRLLNASLGKTDQDD
A2E7H8/245-383              APTAKQ----------------------------------P-------ERPIHAKLSKTE--KTIPLFILFRALKFKGDKEILDLICYDPEDS---EFIDVLRPSIEESSSFL--DDRACLDFVGKRCSIAAEEK--SQRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMAHNLINVVLGRRDQDD
Q0U9V8/240-407              -FRKKQGNVPWTAEIRSAVEKGTRLISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIK--QEVPMAIVFRALGIVSDEEILSHIVYDRTDT---QMLELLKPSIEEGAVIQ--DRETALDFIAKRGA-NQGTR--DRRLKFARDIMQKD----------KTLAKPTFFGYMIHRLLQCVLGRRDEDD
A0A061IX55/226-397          -FTRQKG---LLCEIKSIVEGSLNKPRTLQILMPYKKKG-PEHG----YENLLCRVAQMD--ELIPLFVLFRALDMGSDKEILQTVVPDLKDA---AMLEMLRGSMEDASTLQIFTRDEALWFIGKRLG-KQDSR--ENLQREAQELLMRDLLPHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDTD
K2N506/234-405              -FSRQKG---LLCEIKSIVEGSLNKPRTLQILMPYKKKG-PGHG----YENLLCRVAQMD--ELIPLFVLFRALDMGSDKEILQTVVPDLKDA---AMLEMLRGSMEDASTLQIFTRDEALWFIGKRLG-KQDSR--ENLQREAQALLMRDLLPHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDTD
A0A0M9FQH0/228-399          -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMQYKNKG-PGSG----FENLMCRVAQMD--ETIPLFVLFRALDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREDALGYIGRRLG-KQDSM--ANLQREAESLLMRDLIPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
A0A1G4IGJ6/229-401          AFTRPKG---LLCEIKSIVEGSLNKPRTLQILMPYKKSG-PGHG----YENLLCRVAQMD--ELIPLFVLFRALDMGSDKEILQTVVPDLKDV---AMLEMLRGSMEDASTLEIFTRDEALWFIGKRLG-KQDSR--ENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDTD
A4HIZ1/225-396              -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMPYRNRG-PGSG----FESLMCRVAQMD--ETIPLFVLFRAMDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREEALGYIGRRLG-KQDAM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
A0A0N1PFE3/228-399          -FSRQKG---LLCEVKSIIEGSLNKPRTLQIIMQYKNKG-PGSG----FENLMCRVAQMD--ETIPLFVLFRALDMVSDKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREDALGYIGRRLG-KQDSM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
A4I6A8/221-392              -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMQYKNKG-PGSG----FENLMCRVAQMD--ETIPLFVLFRAMDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREEALGYIGRRLG-KQDAM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
E9B1G4/225-396              -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMQYKNKG-PGSG----FENLMCRVAQMD--ETIPLFVLFRAMDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREEALGYIGRRLG-KQDAM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
A0A088RWS0/225-396          -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMPYRNRG-PGSG----FESLMCRVAQMD--ETIPLFVLFRAMDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREEALGYIGRRLG-KQDAM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
E9BMD9/221-392              -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMQYKNKG-PGSG----FENLMCRVAQMD--ETIPLFVLFRAMDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREEALGYIGRRLG-KQDAM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
A0A3S7X436/221-392          -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMQYKNKG-PGSG----FENLMCRVAQMD--ETIPLFVLFRAMDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREEALGYIGRRLG-KQDAM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
A0A3P3ZDC0/225-396          -FSRQKG---LLCEVKSIVEGSLNKPRTLQIIMPYRNRG-PGSG----FESLMCRVAQMD--ETIPLFVLFRAMDMVADKEILQTVVPDLKDT---AMLELLRGSMSDASTLQIFTREEALGYIGRRLG-KQDAM--ANLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETD
A0DEB3/227-401              VFKSKIVNKPWVAEIRSQPD-LWSNPNNFKVELRYIQNT-P---------VIRCSVKQFNSTQGIPLFTLFRALGISSDQEILERIVYNLEDEQMGPMLEMLYGSLQEGGEYE--DEELCLRWIGNKIK-KAENQDPETLIQEAKKLINKNILPHIGVSSESRDRKAYFIGYIVHRLLNASLGKTDQDD
#=GC scorecons              074454400044465563452334354444524353335093230000233536474655005489875799975545969995477476594000477869569647564552255635935875744065644004554659547646556665634234444944759976969744599757559
#=GC scorecons_70           _*___________*__*_______________________*____________*_*_*______****_*****____*****__**_*__*_____***_*_**__*_________*__*__**_*___*_*________*_*__**____***_*________*__*_*****_**___***_*__*
#=GC scorecons_80           _*______________________________________*_______________________****_****_____*_***___*_*__*_____***_*__*_______________*__**_*________________*__*__________________*__*_***_*_**___***____*
#=GC scorecons_90           ________________________________________*_______________________**____***_____*_***________*_______*_*__*_______________*__*___________________*_____________________*____**__*_*____**_____*
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