# STOCKHOLM 1.0
#=GF ID 3.30.2350.10/FF/000032
#=GF DE Pseudouridine synthase
#=GF AC 3.30.2350.10/FF/000032
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 85.149
#=GS Q3ECD0/139-186_220-414      AC Q3ECD0
#=GS Q3ECD0/139-186_220-414      OS Arabidopsis thaliana
#=GS Q3ECD0/139-186_220-414      DE RNA pseudouridine synthase 2, chloroplastic
#=GS Q3ECD0/139-186_220-414      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q3ECD0/139-186_220-414      DR GO; GO:0009982; 
#=GS B5YKV0/82-312               AC B5YKV0
#=GS B5YKV0/82-312               OS Thermodesulfovibrio yellowstonii DSM 11347
#=GS B5YKV0/82-312               DE Pseudouridine synthase
#=GS B5YKV0/82-312               DR ORG; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio; Thermodesulfovibrio yellowstonii; 
#=GS Q7UHX8/80-331               AC Q7UHX8
#=GS Q7UHX8/80-331               OS Rhodopirellula baltica SH 1
#=GS Q7UHX8/80-331               DE Pseudouridine synthase
#=GS Q7UHX8/80-331               DR ORG; Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula; Rhodopirellula baltica; 
#=GS Q8RDX2/81-300               AC Q8RDX2
#=GS Q8RDX2/81-300               OS Fusobacterium nucleatum subsp. nucleatum ATCC 25586
#=GS Q8RDX2/81-300               DE Pseudouridine synthase
#=GS Q8RDX2/81-300               DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. nucleatum; 
#=GS B9GQ77/132-167_198-407      AC B9GQ77
#=GS B9GQ77/132-167_198-407      OS Populus trichocarpa
#=GS B9GQ77/132-167_198-407      DE Pseudouridine synthase
#=GS B9GQ77/132-167_198-407      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS A0A1D6LMW4/129-176_220-407  AC A0A1D6LMW4
#=GS A0A1D6LMW4/129-176_220-407  OS Zea mays
#=GS A0A1D6LMW4/129-176_220-407  DE RNA pseudouridine synthase 2 chloroplastic
#=GS A0A1D6LMW4/129-176_220-407  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A0J1BEX9/79-330           AC A0A0J1BEX9
#=GS A0A0J1BEX9/79-330           OS Rhodopirellula islandica
#=GS A0A0J1BEX9/79-330           DE Pseudouridine synthase
#=GS A0A0J1BEX9/79-330           DR ORG; Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula; Rhodopirellula islandica; 
#=GS R0IAL9/139-186_218-412      AC R0IAL9
#=GS R0IAL9/139-186_218-412      OS Capsella rubella
#=GS R0IAL9/139-186_218-412      DE Pseudouridine synthase
#=GS R0IAL9/139-186_218-412      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D5RB23/81-300               AC D5RB23
#=GS D5RB23/81-300               OS Fusobacterium nucleatum subsp. nucleatum ATCC 23726
#=GS D5RB23/81-300               DE Pseudouridine synthase
#=GS D5RB23/81-300               DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. nucleatum; 
#=GF SQ 9
Q3ECD0/139-186_220-414              LKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHSYAA-----SVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPP--QGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQE-----EIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPP---------------
B5YKV0/82-312                       ---------IQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALAYHVKKLANVGAPFRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQLRG---SGKITTPVGRAIYDRKKMSIKS-----KKAKEAITEWEVIKNFK--NYTFLKVKILTGRTHQIRVHFSSIGHPVIGDKTYGRKTYIEIG--------------------NKKIPVSRQMLHAHKIELIHPITEKLLQFEASLPDDIQYILNILEDRY
Q7UHX8/80-331                       ----------DILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLSDVGGPTRPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRD--RDWIHASIGRHPYQRDKQAIRE--GH-ATSKTASTFYEVVERHG--RVTRVDVRPKTGRTHQIRVHLAHIGCPILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKALTFTNPQTGKEMTLTAPLPPDLQAVLDLLSSD-
Q8RDX2/81-300                       IDIEPENIPLNIVYENDDFILINKSYGMVVHPAYGNYTGTLVNALLYYTNNLSSVNGNIRPGIIHRLDKDTSGLILVAKNNYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMTIVK-----ENGKIAISNYKVVEQVE--GYSLVEVAIETGRTHQIRVHMKSINHVILGDSVYG----------------------------TEDKNVKRQMLHAYKLEFLNPLDNKKYIFKGKL---------------
B9GQ77/132-167_198-407              ----------DIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGIL-SSYAA-----SVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPM--AGRIDVPIGRDVSNRIRMAAIVEPNR-GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHR-----QLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMG
A0A1D6LMW4/129-176_220-407          LRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHRNAL------VRPGIVHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPN--SGRIEASIARDPNNRIRMTAIAGSGH-RYARNAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPRSPSKYHS-----GLSNLLSKVDRPCLHAASLGWKTN--------------------NKQEDRW
A0A0J1BEX9/79-330                   ----------DILYEDDGLVVINKAAGMVVHPARGHWSGTLTSALAFRFQSLSDVGGPTRPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITSGRLDRD--RDWIHASIGRHPYQRDKQAIRE--DH-STSKSASTFYEVVERHG--RVTRVDVRPKTGRTHQIRVHLAHIGCPILCDRLYGGHSELSRSQIRRMAGMEVATPGVQPTSEDQQVLLGRQALHAKALTFTNPQTGKEMTLTAPIPPDMQAVLDLLSSD-
R0IAL9/139-186_218-412              LKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHSYAA-----SVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPP--QGRIEIPIGRDSSNRIRMAAIPGGLSSGRARHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVCRSDQD-----EIIELISRLDRPCLHAIVLGFTHPCTGKIVKFSCPP---------------
D5RB23/81-300                       IDIEPENIPLNIVYENDDFILINKSYGMVVHPAYGNYTGTLVNALLYYTNNLSSVNGNIRPGIIHRLDKDTSGLILVAKNNYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMTIVK-----ENGKIAISNYKVVEQVE--GYSLVEVAIETGRTHQIRVHMKSINHVILGDSVYG----------------------------TEDKNVKRQMLHAYKLEFLNPLDNKKYIFKGKL---------------
#=GC scorecons                      111212122258697763557679555999897396259995666544334521212349999799997697965799765448449644643547474944652934432004659444879543593765533001103357394637695733411535476454599999999694547636576945994222322412211111111100000111332325395399923746457244622252333101010111011110
#=GC scorecons_70                   ___________******___*_**___******_**__***_***______________**********_****_*****___*__**__*____*_*_*__*__*________*_*___***____*_*_____________*_*___*_*_*_________**____********_*___**_*_***__**___________________________________*__***__*_*__*___________________________
#=GC scorecons_80                   ___________*_**_______**___******_*___***__________________**********_*_*___**_____*__*________*___*_____*__________*___***____*_________________*___*_*_*_________*_____********_*___*____*_*__**___________________________________*__***__*____*___________________________
#=GC scorecons_90                   _____________*_________*___***_*__*___***__________________****_****__*_*___**________*____________*_____*__________*_____*____*_________________*_____*_________________********_*__________*__**___________________________________*__***___________________________________
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