# STOCKHOLM 1.0
#=GF ID 1.10.132.30/FF/000010
#=GF DE DNA-directed RNA polymerase subunit
#=GF AC 1.10.132.30/FF/000010
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 45.296
#=GS A0A2K3D4R2/1044-1148  AC A0A2K3D4R2
#=GS A0A2K3D4R2/1044-1148  OS Chlamydomonas reinhardtii
#=GS A0A2K3D4R2/1044-1148  DE DNA-directed RNA polymerase subunit
#=GS A0A2K3D4R2/1044-1148  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A8J568/999-1103       AC A8J568
#=GS A8J568/999-1103       OS Chlamydomonas reinhardtii
#=GS A8J568/999-1103       DE DNA-directed RNA polymerase subunit
#=GS A8J568/999-1103       DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS C4M3E6/792-924        AC C4M3E6
#=GS C4M3E6/792-924        OS Entamoeba histolytica
#=GS C4M3E6/792-924        DE DNA-directed RNA polymerase subunit
#=GS C4M3E6/792-924        DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS B0EDI6/791-924        AC B0EDI6
#=GS B0EDI6/791-924        OS Entamoeba dispar SAW760
#=GS B0EDI6/791-924        DE DNA-directed RNA polymerase subunit
#=GS B0EDI6/791-924        DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba dispar; 
#=GS K2H4Y0/210-343        AC K2H4Y0
#=GS K2H4Y0/210-343        OS Entamoeba nuttalli P19
#=GS K2H4Y0/210-343        DE DNA-directed RNA polymerase I largest subunit, putative
#=GS K2H4Y0/210-343        DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba nuttalli; 
#=GS A0A150GTA3/1074-1174  AC A0A150GTA3
#=GS A0A150GTA3/1074-1174  OS Gonium pectorale
#=GS A0A150GTA3/1074-1174  DE DNA-directed RNA polymerase subunit
#=GS A0A150GTA3/1074-1174  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium; Gonium pectorale; 
#=GS N9TJQ1/792-924        AC N9TJQ1
#=GS N9TJQ1/792-924        OS Entamoeba histolytica HM-1:IMSS-A
#=GS N9TJQ1/792-924        DE DNA-directed RNA polymerase subunit
#=GS N9TJQ1/792-924        DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M3TGJ8/792-924        AC M3TGJ8
#=GS M3TGJ8/792-924        OS Entamoeba histolytica HM-1:IMSS-B
#=GS M3TGJ8/792-924        DE DNA-directed RNA polymerase subunit
#=GS M3TGJ8/792-924        DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M2RTP6/792-924        AC M2RTP6
#=GS M2RTP6/792-924        OS Entamoeba histolytica KU27
#=GS M2RTP6/792-924        DE DNA-directed RNA polymerase subunit
#=GS M2RTP6/792-924        DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M7W224/24-157         AC M7W224
#=GS M7W224/24-157         OS Entamoeba histolytica HM-3:IMSS
#=GS M7W224/24-157         DE RNA polymerase Rpb1, domain 5 protein
#=GS M7W224/24-157         DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GF SQ 10
A0A2K3D4R2/1044-1148          ------------------------------HARQLLHYEIKVSAELGERYRTNRDTGKAHDMKGSGAMHALSSEVIKVCLPGGQAKAFPQNCLSLMTITGAKGSLVNFSQISCLLGQQELEGRRPPRMASGKTLP
A8J568/999-1103               ------------------------------HARQLLHYEIKVSAELGERYRTNRDTGKAHDMKGSGAMHALSSEVIKVCLPGGQAKAFPQNCLSLMTITGAKGSLVNFSQISCLLGQQELEGRRPPRMASGKTLP
C4M3E6/792-924                -DCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSKYDIDLALANA-RRRPQLSKELDDAVKTEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLP
B0EDI6/791-924                DDCMLKPEFDNKRTEMLNKTNELARIATAKHFKLEGHSKYDIDLALANA-RRRPQLSKELDDSVKNEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLP
K2H4Y0/210-343                DDCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSKYDIDLALANA-RRRPQLSKELDDAVKTEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLP
A0A150GTA3/1074-1174          ----------------------------------LLRHEIKVSAALSERYRANRDTGKAHDMKGSGAMHGLSSEVIKVCLPGGQAKAFPVNCLSLMTITGAKGSLVNFSQISCLLGQQELEGRRPPRMASGKTLP
N9TJQ1/792-924                -DCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSKYDIDLALANA-RRRPQLSKELDDAVKTEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLP
M3TGJ8/792-924                -DCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSKYDIDLALANA-RRRPQLSKELDDAVKTEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLP
M2RTP6/792-924                -DCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSKYDIDLALANA-RRRPQLSKELDDAVKTEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLP
M7W224/24-157                 DDCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSKYDIDLALANA-RRRPQLSKELDDAVKTEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLP
#=GC scorecons                022222222222222222222222212122634344745456555955519455555954944455565445959994969499569993959599959999994995999599999999999959499599999
#=GC scorecons_70             ____________________________________*____*___*____*______*__*___________*_***_*_*_**_****_*_*_***_******_**_***_************_*_**_*****
#=GC scorecons_80             ____________________________________*________*____*______*__*___________*_***_*_*_**__***_*_*_***_******_**_***_************_*_**_*****
#=GC scorecons_90             _____________________________________________*____*______*__*___________*_***_*_*_**__***_*_*_***_******_**_***_************_*_**_*****
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