# STOCKHOLM 1.0
#=GF ID 4.10.860.120/FF/000013
#=GF DE DNA-directed RNA polymerase subunit
#=GF AC 4.10.860.120/FF/000013
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 79.370
#=GS Q18566/3-130       AC Q18566
#=GS Q18566/3-130       OS Caenorhabditis elegans
#=GS Q18566/3-130       DE DNA-directed RNA polymerase subunit
#=GS Q18566/3-130       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS M7WZY8/27-144      AC M7WZY8
#=GS M7WZY8/27-144      OS Entamoeba histolytica HM-3:IMSS
#=GS M7WZY8/27-144      DE DNA-directed RNA polymerase subunit
#=GS M7WZY8/27-144      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS A9VCM2/2-131       AC A9VCM2
#=GS A9VCM2/2-131       OS Monosiga brevicollis
#=GS A9VCM2/2-131       DE DNA-directed RNA polymerase subunit
#=GS A9VCM2/2-131       DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; 
#=GS B0EG66/27-144      AC B0EG66
#=GS B0EG66/27-144      OS Entamoeba dispar SAW760
#=GS B0EG66/27-144      DE DNA-directed RNA polymerase subunit
#=GS B0EG66/27-144      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba dispar; 
#=GS K2GGB7/27-144      AC K2GGB7
#=GS K2GGB7/27-144      OS Entamoeba nuttalli P19
#=GS K2GGB7/27-144      DE DNA-directed RNA polymerase subunit
#=GS K2GGB7/27-144      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba nuttalli; 
#=GS H3FHF9/1-131       AC H3FHF9
#=GS H3FHF9/1-131       OS Pristionchus pacificus
#=GS H3FHF9/1-131       DE DNA-directed RNA polymerase subunit
#=GS H3FHF9/1-131       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A2G5U3V9/3-127   AC A0A2G5U3V9
#=GS A0A2G5U3V9/3-127   OS Caenorhabditis nigoni
#=GS A0A2G5U3V9/3-127   DE DNA-directed RNA polymerase subunit
#=GS A0A2G5U3V9/3-127   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS E3M749/3-128       AC E3M749
#=GS E3M749/3-128       OS Caenorhabditis remanei
#=GS E3M749/3-128       DE DNA-directed RNA polymerase subunit
#=GS E3M749/3-128       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A261CB64/3-131   AC A0A261CB64
#=GS A0A261CB64/3-131   OS Caenorhabditis latens
#=GS A0A261CB64/3-131   DE DNA-directed RNA polymerase subunit
#=GS A0A261CB64/3-131   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A8X1M6/3-130       AC A8X1M6
#=GS A8X1M6/3-130       OS Caenorhabditis briggsae
#=GS A8X1M6/3-130       DE DNA-directed RNA polymerase subunit
#=GS A8X1M6/3-130       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS N9TFU8/27-144      AC N9TFU8
#=GS N9TFU8/27-144      OS Entamoeba histolytica HM-1:IMSS-A
#=GS N9TFU8/27-144      DE DNA-directed RNA polymerase subunit
#=GS N9TFU8/27-144      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M2RMP1/27-144      AC M2RMP1
#=GS M2RMP1/27-144      OS Entamoeba histolytica KU27
#=GS M2RMP1/27-144      DE DNA-directed RNA polymerase subunit
#=GS M2RMP1/27-144      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M3TQY3/27-144      AC M3TQY3
#=GS M3TQY3/27-144      OS Entamoeba histolytica HM-1:IMSS-B
#=GS M3TQY3/27-144      DE DNA-directed RNA polymerase subunit
#=GS M3TQY3/27-144      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS C4M626/27-144      AC C4M626
#=GS C4M626/27-144      OS Entamoeba histolytica
#=GS C4M626/27-144      DE DNA-directed RNA polymerase subunit
#=GS C4M626/27-144      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS A0A2A6D0J9/1-137   AC A0A2A6D0J9
#=GS A0A2A6D0J9/1-137   OS Pristionchus pacificus
#=GS A0A2A6D0J9/1-137   DE DNA-directed RNA polymerase subunit
#=GS A0A2A6D0J9/1-137   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A2G5U2Z2/28-152  AC A0A2G5U2Z2
#=GS A0A2G5U2Z2/28-152  OS Caenorhabditis nigoni
#=GS A0A2G5U2Z2/28-152  DE DNA-directed RNA polymerase subunit
#=GS A0A2G5U2Z2/28-152  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A260ZLV8/3-131   AC A0A260ZLV8
#=GS A0A260ZLV8/3-131   OS Caenorhabditis remanei
#=GS A0A260ZLV8/3-131   DE DNA-directed RNA polymerase subunit
#=GS A0A260ZLV8/3-131   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GF SQ 17
Q18566/3-130               --KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKM--------GVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICK-----NCSSILLTPEQHRVFSRQV-------
M7WZY8/27-144              -------PSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRK--PNPNGVLDRRL--------GVCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK-----NCNRILLTNEERDFYL----------
A9VCM2/2-131               -AKQQYRDDQTPKKISHIQFGLMDHYEMQRLSEVRVYSKEFYTGLPDR-KPAPFGPLDRRL--------GAFDKSLDCATCSQNLRKCEGHFGHIELELPVFHVGFFKATLSCLQRICK-----SCSRVMLSHKQATVFLRRLQD-----
B0EG66/27-144              -------PSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRK--PNPNGVLDRRL--------GVCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK-----NCNRILLTNEERDFYL----------
K2GGB7/27-144              -------PSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRK--PNPNGVLDRRL--------GVCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK-----NCNRILLTNEERDFYL----------
H3FHF9/1-131               MVKEQFRETDVAQKVEGVHFSPGSDVFMRQVAHIPIFNTKLYEESTGKWVPAPFGPLDTRL--------GTSTKSSNCTTCGQNLTDCIGHFGYIDLTMPVFHVGFFRLTIQMLQCICK-----GCSSLLLHSAQREAFMKQIS------
A0A2G5U3V9/3-127           --KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVGGKLQPASYGPLDPRM--------GVSTKTGICATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICK-----NCSSILLTPEQHRVFS----------
E3M749/3-128               --KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVGGKLQPANYGPLDPRM--------GVSTKTGTCATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKQRNFQNCSSILLNPEQH--------------
A0A261CB64/3-131           --KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVGGKLQPANYGPLDPRM--------GVSTKTGTCATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICK-----NCSSILLNPEQHRVFSRQVM------
A8X1M6/3-130               --KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVGGKLQPASYGPLDPRMFLFLKHFQGVSTKTGICATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKY-YFQNCSSILL-------------------
N9TFU8/27-144              -------PSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRK--PNPNGVLDRRL--------GVCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK-----NCNRILLTNEERDFYL----------
M2RMP1/27-144              -------PSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRK--PNPNGVLDRRL--------GVCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK-----NCNRILLTNEERDFYL----------
M3TQY3/27-144              -------PSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRK--PNPNGVLDRRL--------GVCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK-----NCNRILLTNEERDFYL----------
C4M626/27-144              -------PSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRK--PNPNGVLDRRL--------GVCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK-----NCNRILLTNEERDFYL----------
A0A2A6D0J9/1-137           MVKEQFRETDVAQKVEGVHFSPGSDVFMRQVAHIPIFNTKLYEESTGKWVPAPFGPLDTRL--------GTSTKSSNCTTCGQNLTDCIGHFGYIDLTMPVFHVGFFRLTIQMLQCICK-----GCSSLLLHSAQREAFMKQISNPNLDY
A0A2G5U2Z2/28-152          --KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVGGKLQPASYGPLDPRM--------GVSTKTGICATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICK-----NCSSILLTPEQHRVFS----------
A0A260ZLV8/3-131           --KEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVGGKLQPANYGPLDPRM--------GVSTKTGTCATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICK-----NCSSILLNPEQHRVFSRQVM------
#=GC scorecons             003232355656398357595535464956465547554387544558119554959948600000000965554549499844656949996456955999979997568759977990000069657894455533530000000000
#=GC scorecons_70          _________*___**__*_*_______*_*_____*____**_____*__*___*_**_**________**______*_***__*_**_***____*__*********__**_******_____**__***___________________
#=GC scorecons_80          _____________**____*_______*____________**_____*__*___*_**_*_________*_______*_***_____*_***____*__********___**_***_**______*__***___________________
#=GC scorecons_90          _____________**____*_______*____________*______*__*___*_**_*_________*_______*_***_____*_***____*__****_***___*__**__**______*___**___________________
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