# STOCKHOLM 1.0 #=GF ID 4.10.860.120/FF/000010 #=GF DE DNA-directed RNA polymerase subunit #=GF AC 4.10.860.120/FF/000010 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 84.357 #=GS Q9LQ02/6-120 AC Q9LQ02 #=GS Q9LQ02/6-120 OS Arabidopsis thaliana #=GS Q9LQ02/6-120 DE DNA-directed RNA polymerase IV subunit 1 #=GS Q9LQ02/6-120 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9LQ02/6-120 DR GO; GO:0000418; GO:0005515; GO:0005634; GO:0005654; GO:0010495; GO:0030422; GO:0031047; #=GS Q9LQ02/6-120 DR EC; 2.7.7.6; #=GS A0A1P8ANM9/6-120 AC A0A1P8ANM9 #=GS A0A1P8ANM9/6-120 OS Arabidopsis thaliana #=GS A0A1P8ANM9/6-120 DE DNA-directed RNA polymerase subunit #=GS A0A1P8ANM9/6-120 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A1P8ANM7/6-120 AC A0A1P8ANM7 #=GS A0A1P8ANM7/6-120 OS Arabidopsis thaliana #=GS A0A1P8ANM7/6-120 DE DNA-directed RNA polymerase subunit #=GS A0A1P8ANM7/6-120 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A0P0XQV4/6-124 AC A0A0P0XQV4 #=GS A0A0P0XQV4/6-124 OS Oryza sativa Japonica Group #=GS A0A0P0XQV4/6-124 DE Os09g0555187 protein #=GS A0A0P0XQV4/6-124 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS F6HUI3/8-123 AC F6HUI3 #=GS F6HUI3/8-123 OS Vitis vinifera #=GS F6HUI3/8-123 DE DNA-directed RNA polymerase subunit #=GS F6HUI3/8-123 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS K7K551/6-115 AC K7K551 #=GS K7K551/6-115 OS Glycine max #=GS K7K551/6-115 DE DNA-directed RNA polymerase subunit #=GS K7K551/6-115 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A1D6KIX5/3-114 AC A0A1D6KIX5 #=GS A0A1D6KIX5/3-114 OS Zea mays #=GS A0A1D6KIX5/3-114 DE DNA-directed RNA polymerase IV subunit 1 #=GS A0A1D6KIX5/3-114 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS D7KU36/6-120 AC D7KU36 #=GS D7KU36/6-120 OS Arabidopsis lyrata subsp. lyrata #=GS D7KU36/6-120 DE DNA-directed RNA polymerase subunit #=GS D7KU36/6-120 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A445HW56/6-114 AC A0A445HW56 #=GS A0A445HW56/6-114 OS Glycine soja #=GS A0A445HW56/6-114 DE DNA-directed RNA polymerase subunit #=GS A0A445HW56/6-114 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS A0A0E0QUX1/12-129 AC A0A0E0QUX1 #=GS A0A0E0QUX1/12-129 OS Oryza rufipogon #=GS A0A0E0QUX1/12-129 DE DNA-directed RNA polymerase subunit #=GS A0A0E0QUX1/12-129 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; #=GS A0A0E0EUR1/33-150 AC A0A0E0EUR1 #=GS A0A0E0EUR1/33-150 OS Oryza meridionalis #=GS A0A0E0EUR1/33-150 DE DNA-directed RNA polymerase subunit #=GS A0A0E0EUR1/33-150 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; #=GS A0A0D3H9V8/33-150 AC A0A0D3H9V8 #=GS A0A0D3H9V8/33-150 OS Oryza barthii #=GS A0A0D3H9V8/33-150 DE DNA-directed RNA polymerase subunit #=GS A0A0D3H9V8/33-150 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS A0A0E0B6C3/7-124 AC A0A0E0B6C3 #=GS A0A0E0B6C3/7-124 OS Oryza glumipatula #=GS A0A0E0B6C3/7-124 DE DNA-directed RNA polymerase subunit #=GS A0A0E0B6C3/7-124 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; #=GS A0A0E0ING3/7-124 AC A0A0E0ING3 #=GS A0A0E0ING3/7-124 OS Oryza sativa f. spontanea #=GS A0A0E0ING3/7-124 DE DNA-directed RNA polymerase subunit #=GS A0A0E0ING3/7-124 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; #=GS A0A0E0B6C6/7-124 AC A0A0E0B6C6 #=GS A0A0E0B6C6/7-124 OS Oryza glumipatula #=GS A0A0E0B6C6/7-124 DE DNA-directed RNA polymerase subunit #=GS A0A0E0B6C6/7-124 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; #=GS B8BED0/33-150 AC B8BED0 #=GS B8BED0/33-150 OS Oryza sativa Indica Group #=GS B8BED0/33-150 DE DNA-directed RNA polymerase subunit #=GS B8BED0/33-150 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS A0A0D3H9V7/33-150 AC A0A0D3H9V7 #=GS A0A0D3H9V7/33-150 OS Oryza barthii #=GS A0A0D3H9V7/33-150 DE DNA-directed RNA polymerase subunit #=GS A0A0D3H9V7/33-150 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS A0A0E0B6C2/7-124 AC A0A0E0B6C2 #=GS A0A0E0B6C2/7-124 OS Oryza glumipatula #=GS A0A0E0B6C2/7-124 DE DNA-directed RNA polymerase subunit #=GS A0A0E0B6C2/7-124 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; #=GS A0A0E0QUX0/12-129 AC A0A0E0QUX0 #=GS A0A0E0QUX0/12-129 OS Oryza rufipogon #=GS A0A0E0QUX0/12-129 DE DNA-directed RNA polymerase subunit #=GS A0A0E0QUX0/12-129 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; #=GS A0A0E0B6C1/7-124 AC A0A0E0B6C1 #=GS A0A0E0B6C1/7-124 OS Oryza glumipatula #=GS A0A0E0B6C1/7-124 DE DNA-directed RNA polymerase subunit #=GS A0A0E0B6C1/7-124 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; #=GS A0A0E0ING2/7-124 AC A0A0E0ING2 #=GS A0A0E0ING2/7-124 OS Oryza sativa f. spontanea #=GS A0A0E0ING2/7-124 DE DNA-directed RNA polymerase subunit #=GS A0A0E0ING2/7-124 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; #=GS A0A1D6KIX4/4-116 AC A0A1D6KIX4 #=GS A0A1D6KIX4/4-116 OS Zea mays #=GS A0A1D6KIX4/4-116 DE DNA-directed RNA polymerase subunit #=GS A0A1D6KIX4/4-116 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6KIY2/4-117 AC A0A1D6KIY2 #=GS A0A1D6KIY2/4-117 OS Zea mays #=GS A0A1D6KIY2/4-117 DE DNA-directed RNA polymerase subunit #=GS A0A1D6KIY2/4-117 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS K7LMQ8/6-114 AC K7LMQ8 #=GS K7LMQ8/6-114 OS Glycine max #=GS K7LMQ8/6-114 DE DNA-directed RNA polymerase subunit #=GS K7LMQ8/6-114 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS I1JA29/6-115 AC I1JA29 #=GS I1JA29/6-115 OS Glycine max #=GS I1JA29/6-115 DE DNA-directed RNA polymerase subunit #=GS I1JA29/6-115 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GF SQ 25 Q9LQ02/6-120 -EELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQF-QITEDQPERCRY-------- A0A1P8ANM9/6-120 -EELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQF-QITEDQPERCRY-------- A0A1P8ANM7/6-120 -EELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQF-QITEDQPERCRY-------- A0A0P0XQV4/6-124 -LEVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----K-DGAKLYPSVIFKM F6HUI3/8-123 --EQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKVRRLRSKGCKYC------- K7K551/6-115 LQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATCGTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRH---------KSKGARLIY------ A0A1D6KIX5/3-114 -LHREPPEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK----RLEREKV-------- D7KU36/6-120 -EELQVPVGTLTSIGFSISNNTDRDTMSVIKVEAPNQVTDSRLGLPNPDSICKTCGSKDRKVCEGHFGVINFQYSIINPYFLKEIAALLNKICPGCKYIRKKQF-QITEDQPERCRY-------- A0A445HW56/6-114 FQRNKTPSGVIKAIKFDVLTEEDIENIAVLEINAAGQVTGSSLGFPNASDECATCGSKDKRFCEGHFGVIKFPTPILHPYFMSEIAHILNKICPVCKSIRH---------KSKGVRLI------- A0A0E0QUX1/12-129 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0E0EUR1/33-150 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0D3H9V8/33-150 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0E0B6C3/7-124 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0E0ING3/7-124 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0E0B6C6/7-124 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- B8BED0/33-150 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0D3H9V7/33-150 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0E0B6C2/7-124 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0E0QUX0/12-129 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0E0B6C1/7-124 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A0E0ING2/7-124 --EVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTK----KTDGTTIQTTCKYC- A0A1D6KIX4/4-116 --HREPPEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK----RLEREKVQA------ A0A1D6KIY2/4-117 --HREPPEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTK----RLEREKVQAT----- K7LMQ8/6-114 FQRNKTPSGVIKAIKFDVLTEEDIENIAVLEINAAGQVTGSSLGFPNASDECATCGSKDKRFCEGHFGVIKFPTPILHPYFMSEIAHILNKICPVCKSIRH---------KSKGVRLI------- I1JA29/6-115 LQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATCGTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRH---------KSKGARLIY------ #=GC scorecons 01536494537567696657549576675457454458945599799553495999765373979999977664574696964876569969996944575322240000645635421111110 #=GC scorecons_70 ______*___*_****___*__*_**_*___*_____**___*****____*_*****__*_**********___*_****__**___**_*****___*__________*______________ #=GC scorecons_80 ______*___*__*_*______*_*__*___*_____**___*****____*_****___*_*_******________*_*__**___**_***_*___*_________________________ #=GC scorecons_90 ______*________*______*______________**___**_**____*_***______*_*****_________*_*__*____**_***_*_____________________________ //