# STOCKHOLM 1.0
#=GF ID 4.10.60.10/FF/000036
#=GF DE Gag polyprotein
#=GF AC 4.10.60.10/FF/000036
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 80.682
#=GS P04025/535-601  AC P04025
#=GS P04025/535-601  OS Simian retrovirus 1
#=GS P04025/535-601  DE Gag-Pro-Pol polyprotein
#=GS P04025/535-601  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; 
#=GS P04025/535-601  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 3.6.1.23; 
#=GS P04024/535-601  AC P04024
#=GS P04024/535-601  OS Simian retrovirus 1
#=GS P04024/535-601  DE Gag-Pro polyprotein
#=GS P04024/535-601  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; 
#=GS P04024/535-601  DR EC; 3.6.1.23; 
#=GS P07567/534-600  AC P07567
#=GS P07567/534-600  OS Mason-Pfizer monkey virus
#=GS P07567/534-600  DE Gag polyprotein
#=GS P07567/534-600  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; 
#=GS P07567/534-600  DR GO; GO:0005515; GO:0030430; 
#=GS Q99J11/331-389  AC Q99J11
#=GS Q99J11/331-389  OS Mus musculus
#=GS Q99J11/331-389  DE BC005685 protein
#=GS Q99J11/331-389  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS X5GZ27/272-321  AC X5GZ27
#=GS X5GZ27/272-321  OS Human T-cell leukemia virus type I
#=GS X5GZ27/272-321  DE Gag polyprotein
#=GS X5GZ27/272-321  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS P03365/519-576  AC P03365
#=GS P03365/519-576  OS Mouse mammary tumor virus (STRAIN BR6)
#=GS P03365/519-576  DE Gag-Pro-Pol polyprotein
#=GS P03365/519-576  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; 
#=GS P03365/519-576  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 3.6.1.23; 
#=GS P07572/534-600  AC P07572
#=GS P07572/534-600  OS Mason-Pfizer monkey virus
#=GS P07572/534-600  DE Gag-Pro-Pol polyprotein
#=GS P07572/534-600  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; 
#=GS P07572/534-600  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 3.6.1.23; 
#=GS O56220/519-576  AC O56220
#=GS O56220/519-576  OS Mouse mammary tumor virus
#=GS O56220/519-576  DE Pr160
#=GS O56220/519-576  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; 
#=GS O56220/519-576  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 3.6.1.23; 
#=GS P11283/518-576  AC P11283
#=GS P11283/518-576  OS Mouse mammary tumor virus (STRAIN C3H)
#=GS P11283/518-576  DE Gag-Pro-Pol polyprotein
#=GS P11283/518-576  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; 
#=GS P11283/518-576  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 3.6.1.23; 
#=GS P07570/534-600  AC P07570
#=GS P07570/534-600  OS Mason-Pfizer monkey virus
#=GS P07570/534-600  DE Gag-Pro polyprotein
#=GS P07570/534-600  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; 
#=GS P07570/534-600  DR EC; 3.6.1.23; 
#=GS P10271/519-576  AC P10271
#=GS P10271/519-576  OS Mouse mammary tumor virus (STRAIN BR6)
#=GS P10271/519-576  DE Gag-Pro polyprotein
#=GS P10271/519-576  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; 
#=GS P10271/519-576  DR EC; 3.6.1.23; 
#=GS O92804/519-576  AC O92804
#=GS O92804/519-576  OS Mouse mammary tumor virus
#=GS O92804/519-576  DE Pr110
#=GS O92804/519-576  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; 
#=GS O92804/519-576  DR EC; 3.6.1.23; 
#=GS P14077/353-402  AC P14077
#=GS P14077/353-402  OS Human T-cell lymphotrophic virus type 1 (isolate MT-2)
#=GS P14077/353-402  DE Gag polyprotein
#=GS P14077/353-402  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS P14076/353-402  AC P14076
#=GS P14076/353-402  OS Human T-cell lymphotrophic virus type 1 (Caribbean isolate)
#=GS P14076/353-402  DE Gag polyprotein
#=GS P14076/353-402  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS P03345/353-402  AC P03345
#=GS P03345/353-402  OS Human T-cell lymphotrophic virus type 1 (strain ATK)
#=GS P03345/353-402  DE Gag polyprotein
#=GS P03345/353-402  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS Q9QRA0/353-402  AC Q9QRA0
#=GS Q9QRA0/353-402  OS Human T-cell leukemia virus type I
#=GS Q9QRA0/353-402  DE Gag polyprotein
#=GS Q9QRA0/353-402  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS P10274/353-402  AC P10274
#=GS P10274/353-402  OS Human T-cell lymphotrophic virus type 1 (strain ATK)
#=GS P10274/353-402  DE Gag-Pro polyprotein
#=GS P10274/353-402  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS Q9QR99/353-402  AC Q9QR99
#=GS Q9QR99/353-402  OS Human T-cell leukemia virus type I
#=GS Q9QR99/353-402  DE Pr gag-pro
#=GS Q9QR99/353-402  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; 
#=GS P04022/535-601  AC P04022
#=GS P04022/535-601  OS Simian retrovirus 1
#=GS P04022/535-601  DE Gag polyprotein
#=GS P04022/535-601  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; 
#=GS P11284/518-576  AC P11284
#=GS P11284/518-576  OS Mouse mammary tumor virus (STRAIN C3H)
#=GS P11284/518-576  DE Gag polyprotein
#=GS P11284/518-576  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; 
#=GS P10258/519-576  AC P10258
#=GS P10258/519-576  OS Mouse mammary tumor virus (STRAIN BR6)
#=GS P10258/519-576  DE Gag polyprotein
#=GS P10258/519-576  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; 
#=GS Q9WJP5/519-576  AC Q9WJP5
#=GS Q9WJP5/519-576  OS Mouse mammary tumor virus
#=GS Q9WJP5/519-576  DE Gag polyprotein
#=GS Q9WJP5/519-576  DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mouse mammary tumor virus; 
#=GF SQ 22
P04025/535-601          VKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHIHNNSETKAPGLCPRCKRGKHWANECKSKTDSQGN
P04024/535-601          VKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHIHNNSETKAPGLCPRCKRGKHWANECKSKTDSQGN
P07567/534-600          VKDFLNNKNKEKGGCCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTDNQGN
Q99J11/331-389          GGQG------SEGPVCFSCGKTRHIKKDCKE--EKGSKRAPSGLCPRCKKGYHWKSECKSKFDKDGN
X5GZ27/272-321          PNQP-----------CFRCGKAGHWSRDCTQ------PRPPPGPCPLCQDPTHWKRDCPRLKPTIPE
P03365/519-576          -GQG------AEGPVCFSCGKTGHIRKDCKD--EKGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGN
P07572/534-600          VKDFLNNKNKEKGGCCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTDNQGN
O56220/519-576          -GQG------AEGPVCFSCGKTGHIRKDCKD--EKGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGN
P11283/518-576          GGQG------SEGPVCFSCGKTGHIKRDCKE--EKGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGN
P07570/534-600          VKDFLNNKNKEKGGCCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTDNQGN
P10271/519-576          -GQG------AEGPVCFSCGKTGHIRKDCKD--EKGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGN
O92804/519-576          -GQG------AEGPVCFSCGKTGHIRKDCKD--EKGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGN
P14077/353-402          PNQP-----------CFRCGKAGHWSRDCTQ------PRPPPGPCPLCQDPTHWKRDCPRLKPTIPE
P14076/353-402          PNQP-----------CFRCGKAGHWSRDCTQ------PRPPPGPCPLCQDPTHWKRDCPRLKPTIPE
P03345/353-402          PNQP-----------CFRCGKAGHWSRDCTQ------PRPPPGPCPLCQDPTHWKRDCPRLKPTIPE
Q9QRA0/353-402          PNQP-----------CFRCGKAGHWSRDCTQ------PRPPPGPCPLCQDPTHWKRDCPRLKPTIPE
P10274/353-402          PNQP-----------CFRCGKAGHWSRDCTQ------PRPPPGPCPLCQDPTHWKRDCPRLKPTIPE
Q9QR99/353-402          PNQP-----------CFRCGKAGHWSRDCTQ------PRPPPGPCPLCQDPTHWKRDCPRLKPTIPE
P04022/535-601          VKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHIHNNSETKAPGLCPRCKRGKHWANECKSKTDSQGN
P11284/518-576          GGQG------SKGPVCFSCGKTGHIKRDCKE--EKGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGN
P10258/519-576          -GQG------AEGPVCFSCGKTGHIRKDCKD--EKGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGN
Q9WJP5/519-576          -GQG------AEGPVCFSCGKTGHIRKDCKD--EKGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGN
#=GC scorecons          2463000000123229959984894476945002222454689699596553996479555354356
#=GC scorecons_70       __*____________**_***_**__***____________**_**_**___**__**________*
#=GC scorecons_80       _______________**_***_**____*____________**_**_*____**__**_________
#=GC scorecons_90       _______________**_**__**____*____________**_**_*____**___*_________
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