# STOCKHOLM 1.0
#=GF ID 4.10.280.10/FF/000101
#=GF DE Transcription factor PRE4
#=GF AC 4.10.280.10/FF/000101
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 52.887
#=GS Q9LXG5/19-84      AC Q9LXG5
#=GS Q9LXG5/19-84      OS Arabidopsis thaliana
#=GS Q9LXG5/19-84      DE Transcription factor PRE2
#=GS Q9LXG5/19-84      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9LXG5/19-84      DR GO; GO:0003700; GO:0005515; GO:0005773; GO:0009640; GO:0048510; 
#=GS F4JCN9/19-91      AC F4JCN9
#=GS F4JCN9/19-91      OS Arabidopsis thaliana
#=GS F4JCN9/19-91      DE Transcription factor PRE4
#=GS F4JCN9/19-91      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4JCN9/19-91      DR GO; GO:0003700; GO:0005515; GO:0009640; GO:0048510; 
#=GS A0A178V7Y1/19-91  AC A0A178V7Y1
#=GS A0A178V7Y1/19-91  OS Arabidopsis thaliana
#=GS A0A178V7Y1/19-91  DE BNQ3
#=GS A0A178V7Y1/19-91  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A397Z5I0/19-91  AC A0A397Z5I0
#=GS A0A397Z5I0/19-91  OS Brassica rapa
#=GS A0A397Z5I0/19-91  DE Uncharacterized protein
#=GS A0A397Z5I0/19-91  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; 
#=GS V4L631/18-91      AC V4L631
#=GS V4L631/18-91      OS Eutrema salsugineum
#=GS V4L631/18-91      DE Uncharacterized protein
#=GS V4L631/18-91      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS R0FTI1/18-91      AC R0FTI1
#=GS R0FTI1/18-91      OS Capsella rubella
#=GS R0FTI1/18-91      DE Uncharacterized protein
#=GS R0FTI1/18-91      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A078HHS2/19-91  AC A0A078HHS2
#=GS A0A078HHS2/19-91  OS Brassica napus
#=GS A0A078HHS2/19-91  DE BnaA06g17190D protein
#=GS A0A078HHS2/19-91  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A0D3BHW8/19-91  AC A0A0D3BHW8
#=GS A0A0D3BHW8/19-91  OS Brassica oleracea var. oleracea
#=GS A0A0D3BHW8/19-91  DE Uncharacterized protein
#=GS A0A0D3BHW8/19-91  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A3N6TF58/19-91  AC A0A3N6TF58
#=GS A0A3N6TF58/19-91  OS Brassica cretica
#=GS A0A3N6TF58/19-91  DE Uncharacterized protein
#=GS A0A3N6TF58/19-91  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica cretica; 
#=GS D7M6S0/19-84      AC D7M6S0
#=GS D7M6S0/19-84      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M6S0/19-84      DE BHLH family protein
#=GS D7M6S0/19-84      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS M4DNN0/19-91      AC M4DNN0
#=GS M4DNN0/19-91      OS Brassica rapa subsp. pekinensis
#=GS M4DNN0/19-91      DE Uncharacterized protein
#=GS M4DNN0/19-91      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A3P6BM59/19-91  AC A0A3P6BM59
#=GS A0A3P6BM59/19-91  OS Brassica oleracea
#=GS A0A3P6BM59/19-91  DE Uncharacterized protein
#=GS A0A3P6BM59/19-91  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS A0A078GCE6/19-91  AC A0A078GCE6
#=GS A0A078GCE6/19-91  OS Brassica napus
#=GS A0A078GCE6/19-91  DE BnaC03g57170D protein
#=GS A0A078GCE6/19-91  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A3N6QPI1/19-83  AC A0A3N6QPI1
#=GS A0A3N6QPI1/19-83  OS Brassica cretica
#=GS A0A3N6QPI1/19-83  DE Uncharacterized protein
#=GS A0A3N6QPI1/19-83  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica cretica; 
#=GS A0A3P6DQF1/19-83  AC A0A3P6DQF1
#=GS A0A3P6DQF1/19-83  OS Brassica oleracea
#=GS A0A3P6DQF1/19-83  DE Uncharacterized protein
#=GS A0A3P6DQF1/19-83  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS A0A0D2ZSM0/19-83  AC A0A0D2ZSM0
#=GS A0A0D2ZSM0/19-83  OS Brassica oleracea var. oleracea
#=GS A0A0D2ZSM0/19-83  DE Uncharacterized protein
#=GS A0A0D2ZSM0/19-83  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A0D3AJ59/18-82  AC A0A0D3AJ59
#=GS A0A0D3AJ59/18-82  OS Brassica oleracea var. oleracea
#=GS A0A0D3AJ59/18-82  DE Uncharacterized protein
#=GS A0A0D3AJ59/18-82  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A3P6CXR6/18-85  AC A0A3P6CXR6
#=GS A0A3P6CXR6/18-85  OS Brassica oleracea
#=GS A0A3P6CXR6/18-85  DE Uncharacterized protein
#=GS A0A3P6CXR6/18-85  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS A0A078JTJ5/18-85  AC A0A078JTJ5
#=GS A0A078JTJ5/18-85  OS Brassica napus
#=GS A0A078JTJ5/18-85  DE BnaCnng61200D protein
#=GS A0A078JTJ5/18-85  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A397XNI8/19-83  AC A0A397XNI8
#=GS A0A397XNI8/19-83  OS Brassica rapa
#=GS A0A397XNI8/19-83  DE Uncharacterized protein
#=GS A0A397XNI8/19-83  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; 
#=GS M4CWW9/19-83      AC M4CWW9
#=GS M4CWW9/19-83      OS Brassica rapa subsp. pekinensis
#=GS M4CWW9/19-83      DE Uncharacterized protein
#=GS M4CWW9/19-83      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A3P6AG01/19-84  AC A0A3P6AG01
#=GS A0A3P6AG01/19-84  OS Brassica oleracea
#=GS A0A3P6AG01/19-84  DE Uncharacterized protein
#=GS A0A3P6AG01/19-84  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS A0A0D3B180/19-84  AC A0A0D3B180
#=GS A0A0D3B180/19-84  OS Brassica oleracea var. oleracea
#=GS A0A0D3B180/19-84  DE Uncharacterized protein
#=GS A0A0D3B180/19-84  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS M4E405/18-82      AC M4E405
#=GS M4E405/18-82      OS Brassica rapa subsp. pekinensis
#=GS M4E405/18-82      DE Uncharacterized protein
#=GS M4E405/18-82      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS V4N7A0/19-83      AC V4N7A0
#=GS V4N7A0/19-83      OS Eutrema salsugineum
#=GS V4N7A0/19-83      DE Uncharacterized protein
#=GS V4N7A0/19-83      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS M4CPZ7/19-84      AC M4CPZ7
#=GS M4CPZ7/19-84      OS Brassica rapa subsp. pekinensis
#=GS M4CPZ7/19-84      DE Uncharacterized protein
#=GS M4CPZ7/19-84      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A397ZSM4/19-84  AC A0A397ZSM4
#=GS A0A397ZSM4/19-84  OS Brassica rapa
#=GS A0A397ZSM4/19-84  DE Uncharacterized protein
#=GS A0A397ZSM4/19-84  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; 
#=GF SQ 27
Q9LXG5/19-84              -DQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQ-------
F4JCN9/19-91              -EQINDLVLQLHRLLPELANN-RRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTDSAQAALIRSLLM
A0A178V7Y1/19-91          -EQINDLVLQLHRLLPELANN-RRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTDSAQAALIRSLLM
A0A397Z5I0/19-91          EDQINDLVLQLHRLLPELGNNNRRSGKVSASKVLQETCTYIRNLNKEVDDLSERLSQLLESTDSAQAALIRSL--
V4L631/18-91              EDQINDLVHQLHRLLPELGNT-RRSGKVSASKVLQETCSYIRNLNKEVDDLSERLSQLLESTDSAQAALIRSLLM
R0FTI1/18-91              EEQINDLVLQLHRLLPELGNN-RRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTDSDQAALIRSLLM
A0A078HHS2/19-91          EDQINDLVLQLHRLLPELGNNNRRSGKVSASKVLQETCTYIRNLNKEVDDLSERLSQLLESTDSAQAALIRSL--
A0A0D3BHW8/19-91          EDQINDLVLQLHRLLPELGNNHRRSGKVSASKVLQETCTYIRNLNKEVDDLSERLSQLLESTDSAQAALIRSL--
A0A3N6TF58/19-91          EDQINDLVLQLHRLLPELGNNHRRSGKVSASKVLQETCTYIRNLNKEVDDLSERLSQLLESTDSAQAALIRSL--
D7M6S0/19-84              -DQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNSPQ-------
M4DNN0/19-91              EDQINDLVLQLHRLLPELGNNNRRSGKVSASKVLQETCTYIRNLNKEVDDLSERLSQLLESTDSAQAALIRSL--
A0A3P6BM59/19-91          EDQINDLVLQLHRLLPELGNNHRRSGKVSASKVLQETCTYIRNLNKEVDDLSERLSQLLESTDSAQAALIRSL--
A0A078GCE6/19-91          EDQINDLVLQLHRLLPELGNNHRRSGKVSASKVLQETCTYIRNLNKEVDDLSERLSQLLESTDSAQAALIRSL--
A0A3N6QPI1/19-83          -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLNKEANDLSDRLSQLLETIDPNSP--------
A0A3P6DQF1/19-83          -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLNKEANDLSDRLSQLLETIDPNSP--------
A0A0D2ZSM0/19-83          -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLNKEANDLSDRLSQLLETIDPNSP--------
A0A0D3AJ59/18-82          -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLHKEADDLSDRLSQLLETIDPNSP--------
A0A3P6CXR6/18-85          -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLHKEADDLSDRLSQLLETIDPNNPQAA-----
A0A078JTJ5/18-85          -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLHKEADDLSDRLSQLLETIDPNNPQAA-----
A0A397XNI8/19-83          -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLNKEADDLSDRLSQLLETIDPNSP--------
M4CWW9/19-83              -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLNKEADDLSDRLSQLLETIDPNSP--------
A0A3P6AG01/19-84          -DQITELISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDRLSQLLETIDPNSPQ-------
A0A0D3B180/19-84          -DQITELISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDRLSQLLETIDPNSPQ-------
M4E405/18-82              -DQITDLISKLRQSIPEIRQN-RRSSTVSASKVLQETCNYIRNLHKEADDLSDRLSQLLETIDPNSP--------
V4N7A0/19-83              -DQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDRLSQLLETIDPNSP--------
M4CPZ7/19-84              -DQITELISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDRLSQLLETIDPNSPQ-------
A0A397ZSM4/19-84          -DQITELISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDRLSQLLETIDPNSPQ-------
#=GC scorecons            189968974696656996558099955999989999995999996996899979989999669655632222200
#=GC scorecons_70         _***_***_****_****__*_***__***********_********_************__*____________
#=GC scorecons_80         _***_**___*____**___*_***__***********_*****_**_****_*******__*____________
#=GC scorecons_90         __**_**___*____**___*_***__****_******_*****_**_****_*******__*____________
//