# STOCKHOLM 1.0
#=GF ID 3.90.940.10/FF/000005
#=GF DE Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
#=GF AC 3.90.940.10/FF/000005
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 78.304
#=GS Q17684/1-136      AC Q17684
#=GS Q17684/1-136      OS Caenorhabditis elegans
#=GS Q17684/1-136      DE Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
#=GS Q17684/1-136      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q17684/1-136      DR GO; GO:0000003; GO:0032502; 
#=GS Q585J9/1-132      AC Q585J9
#=GS Q585J9/1-132      OS Trypanosoma brucei brucei TREU927
#=GS Q585J9/1-132      DE DNA-directed RNA polymerase subunit, putative
#=GS Q585J9/1-132      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q585J9/1-132      DR GO; GO:0005634; GO:0005654; GO:0005665; 
#=GS Q4Q3B6/5-147      AC Q4Q3B6
#=GS Q4Q3B6/5-147      OS Leishmania major
#=GS Q4Q3B6/5-147      DE Putative DNA-directed RNA polymerase subunit
#=GS Q4Q3B6/5-147      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS Q4Q3B6/5-147      DR GO; GO:0005654; 
#=GS M3U218/1-122      AC M3U218
#=GS M3U218/1-122      OS Entamoeba histolytica HM-1:IMSS-B
#=GS M3U218/1-122      DE RNA polymerases domain containing protein
#=GS M3U218/1-122      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS B0EM77/1-122      AC B0EM77
#=GS B0EM77/1-122      OS Entamoeba dispar SAW760
#=GS B0EM77/1-122      DE DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative
#=GS B0EM77/1-122      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba dispar; 
#=GS K2HY47/1-122      AC K2HY47
#=GS K2HY47/1-122      OS Entamoeba nuttalli P19
#=GS K2HY47/1-122      DE RNA polymerases K / 14 to 18 kDa subunit domain containing protein
#=GS K2HY47/1-122      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba nuttalli; 
#=GS A0A0N1J501/5-150  AC A0A0N1J501
#=GS A0A0N1J501/5-150  OS Leptomonas pyrrhocoris
#=GS A0A0N1J501/5-150  DE Putative DNA-directed RNA polymerase III subunit
#=GS A0A0N1J501/5-150  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leptomonas; Leptomonas pyrrhocoris; 
#=GS A0A1G4I262/1-132  AC A0A1G4I262
#=GS A0A1G4I262/1-132  OS Trypanosoma equiperdum
#=GS A0A1G4I262/1-132  DE DNA-directed RNA polymerase subunit, putative
#=GS A0A1G4I262/1-132  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma equiperdum; 
#=GS A0A3L6L9C9/1-132  AC A0A3L6L9C9
#=GS A0A3L6L9C9/1-132  OS Trypanosoma brucei equiperdum
#=GS A0A3L6L9C9/1-132  DE DNA-directed RNA polymerase subunit
#=GS A0A3L6L9C9/1-132  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei equiperdum; 
#=GS C9ZMZ5/1-132      AC C9ZMZ5
#=GS C9ZMZ5/1-132      OS Trypanosoma brucei gambiense DAL972
#=GS C9ZMZ5/1-132      DE DNA-directed RNA polymerase subunit, putative
#=GS C9ZMZ5/1-132      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei gambiense; 
#=GS A8WSV7/2-137      AC A8WSV7
#=GS A8WSV7/2-137      OS Caenorhabditis briggsae
#=GS A8WSV7/2-137      DE Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
#=GS A8WSV7/2-137      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A8WSV7/2-137      DR GO; GO:0000003; GO:0032502; 
#=GS E3LFP4/2-136      AC E3LFP4
#=GS E3LFP4/2-136      OS Caenorhabditis remanei
#=GS E3LFP4/2-136      DE CRE-RPB-6 protein
#=GS E3LFP4/2-136      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS E3LFP4/2-136      DR GO; GO:0000003; GO:0032502; 
#=GS A0A2G5V2R4/2-137  AC A0A2G5V2R4
#=GS A0A2G5V2R4/2-137  OS Caenorhabditis nigoni
#=GS A0A2G5V2R4/2-137  DE Uncharacterized protein
#=GS A0A2G5V2R4/2-137  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A2H2IN65/1-136  AC A0A2H2IN65
#=GS A0A2H2IN65/1-136  OS Caenorhabditis japonica
#=GS A0A2H2IN65/1-136  DE Uncharacterized protein
#=GS A0A2H2IN65/1-136  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS G0MVN5/2-135      AC G0MVN5
#=GS G0MVN5/2-135      OS Caenorhabditis brenneri
#=GS G0MVN5/2-135      DE Uncharacterized protein
#=GS G0MVN5/2-135      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A1I7UG04/1-136  AC A0A1I7UG04
#=GS A0A1I7UG04/1-136  OS Caenorhabditis tropicalis
#=GS A0A1I7UG04/1-136  DE Uncharacterized protein
#=GS A0A1I7UG04/1-136  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS M7WHH9/1-122      AC M7WHH9
#=GS M7WHH9/1-122      OS Entamoeba histolytica HM-3:IMSS
#=GS M7WHH9/1-122      DE DNA-directed RNA polymerases I, II, and III 23 kDa, putative
#=GS M7WHH9/1-122      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS C4M6S1/1-122      AC C4M6S1
#=GS C4M6S1/1-122      OS Entamoeba histolytica
#=GS C4M6S1/1-122      DE DNA-directed RNA polymerases I II and III 23 kDa putative
#=GS C4M6S1/1-122      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS N9TP58/1-122      AC N9TP58
#=GS N9TP58/1-122      OS Entamoeba histolytica HM-1:IMSS-A
#=GS N9TP58/1-122      DE DNA-directed RNA polymerases I, II, and III 23 kDa, putative
#=GS N9TP58/1-122      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M2RKD8/1-122      AC M2RKD8
#=GS M2RKD8/1-122      OS Entamoeba histolytica KU27
#=GS M2RKD8/1-122      DE DNA-directed RNA polymerases I II and III 23 kDa, putative
#=GS M2RKD8/1-122      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS Q1XEE5/1-132      AC Q1XEE5
#=GS Q1XEE5/1-132      OS Trypanosoma brucei brucei
#=GS Q1XEE5/1-132      DE RNA polymerase subunit 2RPB6
#=GS Q1XEE5/1-132      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GF SQ 21
Q17684/1-136              MADEDDYQDMDNDDFVDDNEMEDV-----------IEEDPQRPDNEDEDD----DNVDENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPDGSYEDWPTDQLQLAD
Q585J9/1-132              -MSERDEDEVDRLSLSIGDEHESV-----------AQSDDER------SDAGAGVVVSGPAPVRGSAKRRDDRDRVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTYEDWRICELDV-D
Q4Q3B6/5-147              ----DDEDDLLSLNLGDDRDEGDSGSDI-RHSG--ADEEDEEGGEQLPEDVAANVILSGNAQAAKGARARGINERVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLPDNTYEDWSVSELLV-D
M3U218/1-122              -MSSDNEAGNDSYSMSEDSNNEDLVIDY-------------------YDDLGVDNYI--------EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNGSYEDWKVSELIV-E
B0EM77/1-122              -MSSDNEADNDSYSMSEDSNNEDLVIDY-------------------YDDLGVDNYI--------EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNGSFEDWKVSELIV-E
K2HY47/1-122              -MSSDNEAGNDSYSMSEDSNNEDLVIDY-------------------YDDLGVDNYI--------EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNGSFEDWKVSELIV-E
A0A0N1J501/5-150          ----DDEDDRLSLNLGDDRDEEDSGSDVNRHDGEEQDEESEEAEGQLPEDVAANVILSGNAQAAKGARARSVNERVTTAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERLTPLIIRRVLPDNTYEDWSVSELLV-D
A0A1G4I262/1-132          -MSERDEDEVDRLSLSIGDEHESV-----------AQSDDER------SDAGAGVVVSGPAPVRGSAKRRDDRDRVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTYEDWRICELDV-D
A0A3L6L9C9/1-132          -MSERDEDEVDRLSLSIGDEHESV-----------AQSDDER------SDAGAGVVVSGPAPVRGSAKRRDDRDRVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTYEDWRICELDV-D
C9ZMZ5/1-132              -MSERDEDEVDRLSLSIGDEHESV-----------AQSDDER------SDAGAGVVVSGPAPVRGSAKRRDDRDRVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTYEDWRICELDV-D
A8WSV7/2-137              -ADDDDYQDMDNDDFVDDNEMEDV-----------IEEEQQRPDHEEEDD---DNNVDENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPIIIRRYLPDGSYEDWPTEQLQLAD
E3LFP4/2-136              -ADDDDYQDMENDDFVDDNDMEDV-----------IEEDPQRADNDDEDD----DNVDENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPDGSYEDWPTEQLQLAD
A0A2G5V2R4/2-137          -ADDDDYQDMDNDDFVDDNEMEDV-----------IEEEQQRPDHEEEDD---DNNVDENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPIIIRRYLPDGSYEDWPTEQLQLAD
A0A2H2IN65/1-136          MADDDDYQDMDNDDFVDDNEMEDV-----------IEEEPQRPEGEEDDD----DNVDENFELFDHGKAVPTTEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPDGSYEDWPTEQLQLAD
G0MVN5/2-135              -ADDDDYQDMDNDDFVDDNEMEDV-----------IEEEPQRPDNEDEDD-----NGGENFEIIEQGKAVPASEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPDGSYEDWSTDQLQLAD
A0A1I7UG04/1-136          MADDDDYQDMDNDDFVEDNEMEDV-----------IDEEPQRPENEDDDD----DNVDENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPDGSYEDWPTEQLQLAD
M7WHH9/1-122              -MSSDNEAGNDSYSMSEDSNNEDLVIDY-------------------YDDLGVDNYI--------EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNGSYEDWKVSELIV-E
C4M6S1/1-122              -MSSDNEAGNDSYSMSEDSNNEDLVIDY-------------------YDDLGVDNYI--------EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNGSYEDWKVSELIV-E
N9TP58/1-122              -MSSDNEAGNDSYSMSEDSNNEDLVIDY-------------------YDDLGVDNYI--------EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNGSYEDWKVSELIV-E
M2RKD8/1-122              -MSSDNEAGNDSYSMSEDSNNEDLVIDY-------------------YDDLGVDNYI--------EEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNGSYEDWKVSELIV-E
Q1XEE5/1-132              -MSERDEDEVDRLSLSIGDEHESV-----------AQSDDER------SDAGAGVVVSGPAPVRGSAKRRDDRDRVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTYEDWRICELDV-D
#=GC scorecons            0444665454643555464538651110000000022231231101026923234362222221244844344766965679999799799999999696999494969599695994599745479598993996668999454693607
#=GC scorecons_70         ____**____*______*___**__________________________*_________________*_____**_**__*******************_***_*_***_****_**__***___**_****_***_*****___**_*_*
#=GC scorecons_80         _____________________*___________________________*_________________*________*___*****************_*_***_*_*_*_**_*_**__***___**_****_**___****____*___*
#=GC scorecons_90         _____________________*___________________________*_________________*________*____****_**_********_*_***_*_*_*_**_*_**__**_____*_****_**___****____*____
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