# STOCKHOLM 1.0 #=GF ID 3.90.70.160/FF/000001 #=GF DE ORF1a polyprotein #=GF AC 3.90.70.160/FF/000001 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 40.190 #=GS A0MD28/420-547 AC A0MD28 #=GS A0MD28/420-547 OS PRRSV SD 01-08 #=GS A0MD28/420-547 DE Replicase polyprotein 1ab #=GS A0MD28/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0MD28/420-547 DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; #=GS Q04561/420-547 AC Q04561 #=GS Q04561/420-547 OS Lelystad virus #=GS Q04561/420-547 DE Replicase polyprotein 1ab #=GS Q04561/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; #=GS Q04561/420-547 DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; #=GS Q6TXK6/35-162 AC Q6TXK6 #=GS Q6TXK6/35-162 OS Porcine reproductive and respiratory syndrome virus #=GS Q6TXK6/35-162 DE Polyprotein #=GS Q6TXK6/35-162 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS Q6TXK1/35-162 AC Q6TXK1 #=GS Q6TXK1/35-162 OS Porcine reproductive and respiratory syndrome virus #=GS Q6TXK1/35-162 DE Polyprotein #=GS Q6TXK1/35-162 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS Q6TXK2/35-162 AC Q6TXK2 #=GS Q6TXK2/35-162 OS Porcine reproductive and respiratory syndrome virus #=GS Q6TXK2/35-162 DE Polyprotein #=GS Q6TXK2/35-162 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS Q6TXK0/35-162 AC Q6TXK0 #=GS Q6TXK0/35-162 OS Porcine reproductive and respiratory syndrome virus #=GS Q6TXK0/35-162 DE Polyprotein #=GS Q6TXK0/35-162 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS Q6TXK4/35-162 AC Q6TXK4 #=GS Q6TXK4/35-162 OS Porcine reproductive and respiratory syndrome virus #=GS Q6TXK4/35-162 DE Polyprotein #=GS Q6TXK4/35-162 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A5YVX2/35-162 AC A5YVX2 #=GS A5YVX2/35-162 OS Porcine reproductive and respiratory syndrome virus #=GS A5YVX2/35-162 DE Nonstructural protein NSP2 #=GS A5YVX2/35-162 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A4UHS4/35-162 AC A4UHS4 #=GS A4UHS4/35-162 OS Porcine reproductive and respiratory syndrome virus #=GS A4UHS4/35-162 DE NSP2 #=GS A4UHS4/35-162 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS Q3L2N6/35-163 AC Q3L2N6 #=GS Q3L2N6/35-163 OS Porcine reproductive and respiratory syndrome virus #=GS Q3L2N6/35-163 DE Nonstructural protein nsp2 #=GS Q3L2N6/35-163 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A068CKB1/36-163 AC A0A068CKB1 #=GS A0A068CKB1/36-163 OS Porcine reproductive and respiratory syndrome virus #=GS A0A068CKB1/36-163 DE NSP2 #=GS A0A068CKB1/36-163 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1P8NRR6/420-547 AC A0A1P8NRR6 #=GS A0A1P8NRR6/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1P8NRR6/420-547 DE ORF1a #=GS A0A1P8NRR6/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A7UKW2/420-547 AC A7UKW2 #=GS A7UKW2/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS A7UKW2/420-547 DE Polyprotein #=GS A7UKW2/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A0U2YQP0/420-548 AC A0A0U2YQP0 #=GS A0A0U2YQP0/420-548 OS Porcine reproductive and respiratory syndrome virus #=GS A0A0U2YQP0/420-548 DE Polyprotein 1a #=GS A0A0U2YQP0/420-548 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1P8NRK3/420-547 AC A0A1P8NRK3 #=GS A0A1P8NRK3/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1P8NRK3/420-547 DE ORF1a #=GS A0A1P8NRK3/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS Q6UN13/420-547 AC Q6UN13 #=GS Q6UN13/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS Q6UN13/420-547 DE Replicase polyprotein 1A #=GS Q6UN13/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1P8NRD2/420-547 AC A0A1P8NRD2 #=GS A0A1P8NRD2/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1P8NRD2/420-547 DE ORF1a #=GS A0A1P8NRD2/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A0S2IKF5/420-547 AC A0A0S2IKF5 #=GS A0A0S2IKF5/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS A0A0S2IKF5/420-547 DE ORF1a #=GS A0A0S2IKF5/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A140GJK3/420-546 AC A0A140GJK3 #=GS A0A140GJK3/420-546 OS Porcine reproductive and respiratory syndrome virus #=GS A0A140GJK3/420-546 DE Pp1a #=GS A0A140GJK3/420-546 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1P8NRM4/420-547 AC A0A1P8NRM4 #=GS A0A1P8NRM4/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1P8NRM4/420-547 DE ORF1a #=GS A0A1P8NRM4/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS E9P7V6/420-548 AC E9P7V6 #=GS E9P7V6/420-548 OS Porcine reproductive and respiratory syndrome virus #=GS E9P7V6/420-548 DE ORF1a polyprotein #=GS E9P7V6/420-548 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS A0A1U9X9Q8/420-547 AC A0A1U9X9Q8 #=GS A0A1U9X9Q8/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS A0A1U9X9Q8/420-547 DE Replicase polyprotein 1a #=GS A0A1U9X9Q8/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS E9P7U0/420-547 AC E9P7U0 #=GS E9P7U0/420-547 OS Porcine reproductive and respiratory syndrome virus #=GS E9P7U0/420-547 DE ORF1a polyprotein #=GS E9P7U0/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS E9P7Y0/420-546 AC E9P7Y0 #=GS E9P7Y0/420-546 OS Porcine reproductive and respiratory syndrome virus #=GS E9P7Y0/420-546 DE ORF1a polyprotein #=GS E9P7Y0/420-546 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS P0DJY0/420-547 AC P0DJY0 #=GS P0DJY0/420-547 OS PRRSV SD 01-08 #=GS P0DJY0/420-547 DE Truncated polyprotein 1aTF #=GS P0DJY0/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; #=GS P0DJZ9/420-547 AC P0DJZ9 #=GS P0DJZ9/420-547 OS Lelystad virus #=GS P0DJZ9/420-547 DE Replicase polyprotein 1TF #=GS P0DJZ9/420-547 DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; #=GF SQ 26 A0MD28/420-547 TYSPPTDGSCGWHVLAAIVNRMINGDFTSPLPQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- Q04561/420-547 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLTQYNRPEDDWASDYDLVQAIQCLRLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- Q6TXK6/35-162 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLTQYNRPEDDWASDFDLIQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- Q6TXK1/35-162 TYSPPTDGSCGWHVLAAIMNRMMNGDFTSPLPQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLVRLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- Q6TXK2/35-162 TYSPPTDGSCGWHVLAAIMNRMMNGDFTSPLPQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLVRLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- Q6TXK0/35-162 TYSPPTDGSCGWHVLAAIMNRMMNGDFTSPLPQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLVRLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- Q6TXK4/35-162 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLAPHNRPEDDWASDYDLVQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEARSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- A5YVX2/35-162 TYSPPTDGSCGWHVLAVIMNRMMSGDFTSPLTQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRPGMAPRSLSRECVVGVCSEGCIAPPYPQDGLPKRALEALASAY- A4UHS4/35-162 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLTQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRVCPNAKYLIKLNGVHWEVEVRSGMAPRSLSRVCVVGVCSEGCVAPPYPADGLPKRALEALASAY- Q3L2N6/35-163 TYSPPTDGSCGWHVLAAIMNRMMNDDFTSPLTQYNRPEDDWASDYDLAQAIQCLQLPASVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLLRECVVGVCSEGCVAPPYPANGLPKRALEALASAYR A0A068CKB1/36-163 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLTQYNRPEDDWASDYDLVQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- A0A1P8NRR6/420-547 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLAPHNRPEDDWASDYDLVQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEARSGIAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- A7UKW2/420-547 TYSPPTDGSCGWHVIAAIVNRMMNGNFTSPLTQYNRPEDDWASDYDLAQAIQCLQLPATIVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLPRECVVGVCSEGCVASPYPKNGLPSRALEALASAY- A0A0U2YQP0/420-548 TYSPPMDGSCGWHVLAAIMNRMINGDFTSPLTQYNRPEDDWASDYDLAQAIQFLQLPATIVRNRACPNAKYLIKLKGVHWEVEVRSGMTPRSLPRECVVGVCSEGCVAPPYPKNGLPERALEALASAYS A0A1P8NRK3/420-547 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLAQYSRPEDDRASDYDLAQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAQPYPADGLPKRALEALASAY- Q6UN13/420-547 TYSPPTDGSCGWHVLAAIMNRMMNDDFTSPLTQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- A0A1P8NRD2/420-547 TYSPPTDGSCGWHVLAAIINRMLNDDFTSPLTQYNRPEDDWASDYDLAEAIQLLQLPATIVRGRACPNAKYLIKLNGVHWEVEVRSGMAPRSLPRECVVGVCSEGCVSSPYPENGLPKRALEALASAY- A0A0S2IKF5/420-547 TYSPPADGSCGWHVLAAIMNRMMNGDFTSPLAQYSRPEDDWASDYDLAQAIQCLQLPATIVRNRACPNAKYLIRLNGVHWEVEVRPGVAPRSLSRECVVGVCSEGCVALPYPENGLPKRALEALASAY- A0A140GJK3/420-546 TYSPPTDGSCGWHVLAAIINRMMHGDFTSPLTPYNRPEDDWASDYDLVQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALSSA-- A0A1P8NRM4/420-547 TYSPPTDGSCGWHVLAAIMNRMMNGDFTSPLPQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLVRLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- E9P7V6/420-548 TYSPPTDGSCGWHVLAAIMNRMMNDDFTSPLAQYNRPEDDWASDYDLIQVIQHLQLPAAIVRNRACPNAKYLVKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPERALEALATAYR A0A1U9X9Q8/420-547 TYSPPTDGSCGWHVLGAIMNRMINGDFTSPLIRYNRPEDDWASDYDLAQAIQCLQLPAAVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECIVGVCSEGCVAPPYPADGLPKRALEALASAY- E9P7U0/420-547 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLPQYNRPEDDWASDYDLAQAIQCLRLPATVVRGRACPNAKYLIKLNGVHWEVEVRSGIAPRSLSRECVVGVCSEGCVASPYPADGLPKRALEALASAY- E9P7Y0/420-546 TYSPPTDGSCGWHVLAAIMNRMMNGDFTSPLTQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRPGMAPRSLSPECVVGVCSEGCIAPPYPQDGLPKRALEALASA-- P0DJY0/420-547 TYSPPTDGSCGWHVLAAIVNRMINGDFTSPLPQYNRPEDDWASDYDLAQAIQCLQLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- P0DJZ9/420-547 TYSPPTDGSCGWHVLAAIMNRMINGDFTSPLTQYNRPEDDWASDYDLVQAIQCLRLPATVVRNRACPNAKYLIKLNGVHWEVEVRSGMAPRSLSRECVVGVCSEGCVAPPYPADGLPKRALEALASAY- #=GC scorecons 999997999999998889799968789999957889999989998996889969899977997989999999779899999998979789999688989999999988699956999799999988970 #=GC scorecons_70 *******************************_********************************************************************************_***************_ #=GC scorecons_80 **********************_********_***************_****_****************************************_**************_***__***_**********_ #=GC scorecons_90 *****_************_***___******__*_************_****_*****__**_*********__***********_*_*****_**************_***__***_*********__ //