# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/000291
#=GF DE Deubiquitylating with USP/UBP and OTU domains
#=GF AC 3.90.70.10/FF/000291
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 73.390
#=GS U4PBM0/302-583  AC U4PBM0
#=GS U4PBM0/302-583  OS Caenorhabditis elegans
#=GS U4PBM0/302-583  DE Deubiquitylating with USP/UBP and OTU domains
#=GS U4PBM0/302-583  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS U4PBZ5/147-428  AC U4PBZ5
#=GS U4PBZ5/147-428  OS Caenorhabditis elegans
#=GS U4PBZ5/147-428  DE Deubiquitylating with USP/UBP and OTU domains
#=GS U4PBZ5/147-428  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS U4PMF4/1-270    AC U4PMF4
#=GS U4PMF4/1-270    OS Caenorhabditis elegans
#=GS U4PMF4/1-270    DE Deubiquitylating with USP/UBP and OTU domains
#=GS U4PMF4/1-270    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q7JLI8/267-557  AC Q7JLI8
#=GS Q7JLI8/267-557  OS Caenorhabditis elegans
#=GS Q7JLI8/267-557  DE Deubiquitylating with USP/UBP and OTU domains
#=GS Q7JLI8/267-557  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A8WS96/198-441  AC A8WS96
#=GS A8WS96/198-441  OS Caenorhabditis briggsae
#=GS A8WS96/198-441  DE Protein CBR-DUO-2
#=GS A8WS96/198-441  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GF SQ 5
U4PBM0/302-583          --RRLYNTGNSCYFNSTMQALSSCPSLVSRFEMLHRLRHGNY------LECPSYDLRPKFAVFESCLRMMVKLSDRMENPHL-KEYRLPSFSETELANTRLKIGRVVKEFDNNDQKDAHEYLTELLSCVDDIMQVVPDEIKH-------------LDPLNSIRYKTERSFICFNCGHEEKSSDCGWILPLSISNNDYGIIELLESNFKTTLETNKICSSCSCENAVSSERIANFPECLILNPMRYERTSIS---DYRKDNRQITVPLTLDLTRFGAFASLEQDENRNSVSFGSCGKDSIKYRNGPSI---
U4PBZ5/147-428          --RRLYNTGNSCYFNSTMQALSSCPSLVSRFEMLHRLRHGNY------LECPSYDLRPKFAVFESCLRMMVKLSDRMENPHL-KEYRLPSFSETELANTRLKIGRVVKEFDNNDQKDAHEYLTELLSCVDDIMQVVPDEIKH-------------LDPLNSIRYKTERSFICFNCGHEEKSSDCGWILPLSISNNDYGIIELLESNFKTTLETNKICSSCSCENAVSSERIANFPECLILNPMRYERTSIS---DYRKDNRQITVPLTLDLTRFGAFASLEQDENRNSVSFGSCGKDSIKYRNGPSI---
U4PMF4/1-270            -----------------MQALSSCPSLVSRFEMLHRLRHGNY------LECPSYDLRPKFAVFESCLRMMVKLSDRMENPHL-KEYRLPSFSETELANTRLKIGRVVKEFDNNDQKDAHEYLTELLSCVDDIMQVVPDEIKH-------------LDPLNSIRYKTERSFICFNCGHEEKSSDCGWILPLSISNNDYGIIELLESNFKTTLETNKICSSCSCENAVSSERIANFPECLILNPMRYERTSIS---DYRKDNRQITVPLTLDLTRFGAFASLEQDENRNSVSFGSCGKDSIKYRNGPSIGPR
Q7JLI8/267-557          ENRQLVNTGNSCYYNSTMQAVSSCNPLVIRCEQLYRMVRDNIELFDDSMNNDQADIKRKYIVLQNFLKVVICLGWHFNKRN---EGKSIELRRYDLLQYRQNVGKINEEFNNDDQQDAHEFLLTLIGAVDDAMGVMSKNVKTI-----DNVGIT-LNPARAFKIDVETMYVCQGCSNEELKVDSRNDLGVSVMDGCS--VQKLVSSFVKWSPIEKECSSCKHKISSSCERISTFPECLIINLKRYELEGQGPPFSMKKKSCRVEPSFKLDVSSLGNFPPVEHPEMFENKEYST--TEPVNSEDS------
A8WS96/198-441          QPFDL-------YY--------------SRCVHLKRTTSFEGKL----FKTKETEMSTKYEFFQLFIGLISYLSLTDDDDDVFSKNLPTRISRKKLEEFRKMIGKINTILDNSLQQDAHECLGTVLEIMNDLFQ----SNRTLVGPPPSNINVSRLNPAEVFKLTIESMLVCQQCNTVVLKKDFQNDMKLDVSDNSS--VQDLVNSWGKWTSVERRCSHCQANVSSTSERIFEFPSSLIITLKRYNYERN----AVKKKHCSVEASFNINVSSLGVF------------------------RD-------
#=GC scorecons          0022502222225422244424442244595539494342620100004433337543973565356455439624254343026333434552493439337966434669449599995934664366945542224474000000011010095944456334934569339445544393434636565563411652946553433345729959334354669993499569956549962443200033695444644554665545949222422421221232211232322652111000
#=GC scorecons_70       _____________________________*___*_*__________________*___**__*___*_____**_____________________*___*__****___***__*_****_*__**__***_________*______________*_*____*___*___**__*_______*____*_*_*_______*__*___________*_**_*_______****__**__**____**___________**____*_____**____*_*_________________________________
#=GC scorecons_80       _____________________________*___*_*______________________*_____________*______________________*___*__**_______*__*_****_*________*________________________*_*________*____*__*_______*___________________*_____________**_*________***__**__**____**____________*________________*_*_________________________________
#=GC scorecons_90       _____________________________*___*_*______________________*_____________*______________________*___*___*_______*__*_****_*________*________________________*_*________*____*__*_______*___________________*_____________**_*________***__**__**____**____________*________________*_*_________________________________
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