# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/000241
#=GF DE Ubiquitin carboxyl-terminal hydrolase
#=GF AC 3.90.70.10/FF/000241
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 72.264
#=GS Q22240/80-335_385-475           AC Q22240
#=GS Q22240/80-335_385-475           OS Caenorhabditis elegans
#=GS Q22240/80-335_385-475           DE Ubiquitin carboxyl-terminal hydrolase
#=GS Q22240/80-335_385-475           DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q22240/80-335_385-475           DR GO; GO:0004843; GO:0005737; GO:0008595; 
#=GS W4YH84/144-331_396-490          AC W4YH84
#=GS W4YH84/144-331_396-490          OS Strongylocentrotus purpuratus
#=GS W4YH84/144-331_396-490          DE Uncharacterized protein
#=GS W4YH84/144-331_396-490          DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS A0BTY8/1-234_411-498            AC A0BTY8
#=GS A0BTY8/1-234_411-498            OS Paramecium tetraurelia
#=GS A0BTY8/1-234_411-498            DE Uncharacterized protein
#=GS A0BTY8/1-234_411-498            DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A9V461/198-468_550-623_663-678  AC A9V461
#=GS A9V461/198-468_550-623_663-678  OS Monosiga brevicollis
#=GS A9V461/198-468_550-623_663-678  DE Predicted protein
#=GS A9V461/198-468_550-623_663-678  DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; 
#=GS A8XHZ9/80-328_423-503           AC A8XHZ9
#=GS A8XHZ9/80-328_423-503           OS Caenorhabditis briggsae
#=GS A8XHZ9/80-328_423-503           DE Protein CBG13344
#=GS A8XHZ9/80-328_423-503           DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS G0NW71/89-337_413-493           AC G0NW71
#=GS G0NW71/89-337_413-493           OS Caenorhabditis brenneri
#=GS G0NW71/89-337_413-493           DE Uncharacterized protein
#=GS G0NW71/89-337_413-493           DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2G5UX78/80-328_405-485       AC A0A2G5UX78
#=GS A0A2G5UX78/80-328_405-485       OS Caenorhabditis nigoni
#=GS A0A2G5UX78/80-328_405-485       DE Uncharacterized protein
#=GS A0A2G5UX78/80-328_405-485       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 7
Q22240/80-335_385-475                   VDENGHR---YVGLVNQAMTCYLNSLVQSLYMTPEFRNAMYDWEYVQQPAHIKEQRKKAEQSIPCQLQKLFLLLQTS-ENDSLETKDLTQSFGWT------SNEAYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLD-----------------------------GSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWN-------QSNTNAYMLMYRRI-
W4YH84/144-331_396-490                  --------------------------------SP-------------------------------------IITATS-DTSSL-SSDYSSYVPYSSAVIGRSETAWQQHDVQELCRVMFDALEKKWKNTDQSNLINQLYQGQLKDYVKCLKCGYESARSDAFLDIPLVIRPFGANKVYSSVDEALRAFVEPETLD-----------------------------ESNQYFCEKCNMKCDAHKGLKFQHFPYLLTLQLKRFDFDYNTMHRIKLNDKMTFPEILDLNAFVTNHRN----------DQERQTRGPYTYELFSIMVHSGTASGGHYYAYIKSFTDGQWYCFNDQHVSRITYDDIRKTYGGEPTHYRGYYSSSYTSSTNAYMLMYRQI-
A0BTY8/1-234_411-498                    M---------YCGLNNLGNTCYMNSLLQTLFMTRQFREALFKWKYDE------TKHPKKEDCIPYQLQYLFTKMQEGYENRAVDARGLVRSFQWD------PQESFAQHDVQEFCRVLFDAIQQ----SDDQDFITRLYQSHSQSYVQCLKCQSESVSNEVFLDLSLTVKSDFLNVYNESLERALYYYIKPEKLD-----------------------------GDNKYFCQNCNDKTDALKGFRLKALSDILTIQLNRFELDMNTFERKKVNDYVSFPFVLDMNNFLSVKQK----------IQELLQNGPNVYELYSVMIHSGGALGGHYYAYVKSFENGDWYCFNDSTVSKISWKTILSMFGDK--------YPKYNMGSSAYFLMYRRAG
A9V461/198-468_550-623_663-678          ---SSHRAAGYVGLANQGATCYLNSLLQSLYMTPEFRNALYRWQ----PE---GGAEAETSSIPLELQRLFLTLQEG-KVSYAETTAVTKSFGWD------GAEAFQQHDVQELLRVLFDALETEWTDTPLAKTIQDLYQGELKDYVRCLACGNESARNDKFMDVPLVIRPFGSEDCLGSVQESLDKFIEVERLDHHPSPDAPYARLSGLTLNRGWLWMLFCLQGDNQYECSHCKCKQDADKGLKFAQLPYILTFQIKRFDFDYVYFRRIKLNDKFSFPLELDMSSYMLTEDP----FEGDAAARQQALKNGMLYELFSIMIHSGSALGGHYYAYIKDFKTGKWLCFNDSSVT-----EIDVSFVLSP-------GPSYSSSSSGYMLLYRRVD
A8XHZ9/80-328_423-503                   LDENSHR---YVGLVNQAMTCYLNSLVQSLYMTPEFRNAMYEWEYVQLPAHIKEQRKKAEQSIPCQLQKLFLLLQTT-ENDSLETKDLTQSFGWT------SNEAYDQHDVQELCRLMFDALEHKWKGTKHEKLIQDLYRGTLEDFVACLNCGRESVKTDYFLDLSLAVKPFGAIHAYKSIEEALNAFVQPELLN-----------------------------GSNQYMCENCKSNQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNEYV-----------------IMKTNGEDVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPSEVEKSFGGHPSGWN-------QSNTNAYMLMYRKI-
G0NW71/89-337_413-493                   LDENDHR---YVGLVNQAMTCYLNSLVQSLYMTPEFRNAMYEWEYIQQPNSIRDQKKKAESSIPCQLQKLFLLLQTS-ENDSLETKDLTQSFGWT------SNEAYDQHDVQELCRLMFDALEHKWKGTKHEKLIQDLYRGSMEDVVSCLKCGYESVKKDYFLDLPLAVKPFTSMHAYKSVEEALTAFVQPELLD-----------------------------GSNQYMCESCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNEYV-----------------MIKKNGENVYELFSVMVHSGNAAGGHYFAYIKNLDQDKWYVFNDTRVDFATPLDIEKSFGGHPMGWN-------QSNTNAYMLMYRKI-
A0A2G5UX78/80-328_405-485               LDENSHR---YVGLVNQAMTCYLNSLVQSLYMTPEFRNAMYEWEYVQLPAHIKEQRKKAEQSIPCQLQKLFLLLQTT-ENDSLETKDLTQSFGWT------SNEAYDQHDVQELCRLMFDALEHKWKGTKHEKLIQDLYRGTLEDFVACLNCGRESVKTDYFLDLSLAVKPFGAMHAYKSIEEALSAFVQPELLN-----------------------------GSNQYMCENCKSNQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNEYV-----------------IMKTNGEEVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPSEVEKSFGGHPSGWN-------QSNTNAYMLMYRKI-
#=GC scorecons                          1112133000535525332555455535454566455453425331203101122223232455245525553565405444545455546646400000054675499999976966999774453373335594599673556693995963995547297955946675443334396667924765693970000000000000000000000000000065979395495364994997643567669959779977966655969799655993599673751111100000000001132334633599979696999494999979979464354964999439423411573457643511220000112364557969799550
#=GC scorecons_70                       ________________________________**________________________________________*_______________**_*_________**__*******_*_******_____*_____*__**_*___*_*_**_**_**___*_***__*_***________*__***__**_**_**_____________________________*_***_*__*__*_**_****___******_********_*___*_****___**__****_*_______________________*___***********_*_*********______**_***__*_______*___**_______________*___*******___
#=GC scorecons_80                       ___________________________________________________________________________________________________________*******_*__*****___________*__**_______*_**_*__**___*_***__*____________*____*__*___*_*________________________________***_*__*____**_***________**_**_*****_____*_****___**__**___*___________________________*****_*_***_*_*********______*__***__*_______*___*_____________________*_****___
#=GC scorecons_90                       ___________________________________________________________________________________________________________******__*__***_____________*__**_______*_**_*__**_____*_*__*____________*____*______*_*________________________________*_*_*__*____**_**_________**_*__**__*_____*_*_**___**__**_______________________________***_*_*_***_*_****_**_*______*__***__*_________________________________*_*_**___
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