# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/000196
#=GF DE Clan CA, family C1, cathepsin B-like cysteine peptidase
#=GF AC 3.90.70.10/FF/000196
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 87.995
#=GS A2DPZ6/9-253   AC A2DPZ6
#=GS A2DPZ6/9-253   OS Trichomonas vaginalis
#=GS A2DPZ6/9-253   DE Clan CA, family C1, cathepsin B-like cysteine peptidase
#=GS A2DPZ6/9-253   DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A0CRC6/66-351  AC A0CRC6
#=GS A0CRC6/66-351  OS Paramecium tetraurelia
#=GS A0CRC6/66-351  DE Uncharacterized protein
#=GS A0CRC6/66-351  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A2E0B9/3-240   AC A2E0B9
#=GS A2E0B9/3-240   OS Trichomonas vaginalis
#=GS A2E0B9/3-240   DE Clan CA, family C1, cathepsin B-like cysteine peptidase
#=GS A2E0B9/3-240   DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A2E6N1/8-254   AC A2E6N1
#=GS A2E6N1/8-254   OS Trichomonas vaginalis
#=GS A2E6N1/8-254   DE Clan CA, family C1, cathepsin B-like cysteine peptidase
#=GS A2E6N1/8-254   DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A2ENW9/3-240   AC A2ENW9
#=GS A2ENW9/3-240   OS Trichomonas vaginalis
#=GS A2ENW9/3-240   DE Clan CA, family C1, cathepsin B-like cysteine peptidase
#=GS A2ENW9/3-240   DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A0CYS7/65-352  AC A0CYS7
#=GS A0CYS7/65-352  OS Paramecium tetraurelia
#=GS A0CYS7/65-352  DE Uncharacterized protein
#=GS A0CYS7/65-352  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A0CXI4/65-352  AC A0CXI4
#=GS A0CXI4/65-352  OS Paramecium tetraurelia
#=GS A0CXI4/65-352  DE Uncharacterized protein
#=GS A0CXI4/65-352  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A0CGA3/56-337  AC A0CGA3
#=GS A0CGA3/56-337  OS Paramecium tetraurelia
#=GS A0CGA3/56-337  DE Uncharacterized protein
#=GS A0CGA3/56-337  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A0CE34/56-335  AC A0CE34
#=GS A0CE34/56-335  OS Paramecium tetraurelia
#=GS A0CE34/56-335  DE Uncharacterized protein
#=GS A0CE34/56-335  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A0D203/57-332  AC A0D203
#=GS A0D203/57-332  OS Paramecium tetraurelia
#=GS A0D203/57-332  DE Uncharacterized protein
#=GS A0D203/57-332  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GF SQ 10
A2DPZ6/9-253           -----------------SIRNPYH--------------------------------TQLADLS-NISVELPEYYNFLEEYPECDFGPLIQ-HCGCCYVYSALKSLAHRYCRALRRR--IQFSAQYIISCDLF-NLGCNGGNEKAVFYYLEQHGVPELECQPWRGIRGYNQEVCKKCVNGKAINLYYAKKRSTKHYVGIENIKKAIYLEGPLSASIVSDYKFIWYKDGLYTSTIDSSTYDDQSNHTIEVHGWGKFDNGTEYWIVQNAFGPIWGQNGLMKLKMGT-NEGYSETYMLGAQPDL---
A0CRC6/66-351          --RSSKKLTTAPVIDEEEIAGHNSLG-SYLQGPNDFFKDWKFSDAKFIFNNHLTFKGKIPQCP-ESGVIIPESYNFREVQPECAQPIYNQGNCSSSYSIAAVSATSDRLCKVRNGEFQDQLSPQSPISCDNK-NYRCGGGSVTRVLEVGKKQGFVTTSCLPYTGTEDAKDN-CDALFT----NCEKYKIQDYCVISSEENIKREILNNGPVVAVIQVFKDFLVYKGGIYEV--VEGSSKFQYGHAVKVIGWGK-QDGVNYWVIENSWGDSWGLKGLAYVAVGQ-NQLQLEAYSVA--PIVAA-
A2E0B9/3-240           -----------------------------------------------------------KDYS-DVKVDLPSYYNFLEEYPECDFGPLSQ-NCGCCYIFSAVKTLSHRFCRALRRQ--ILLSTQYLIACDLS-NLGCNGGNEKAVFYYLENHGTPELDCQPWQEIRSYEPKVCTKCVDDKPFKLYHAKMRSTRVIHGIENIKKAIYLEGPLSASVISDYGFTWYREGLYRTQVSSDEYNDASNHTVEIHGWGTFDNGTEYWIVQNAFGPRWGCSGLMKMQMGV-NAGYIESYMLSVEPELSDA
A2E6N1/8-254           ------GVKSRFAFVDESIRSFP---------------------------------------E-DISIDIPDEYNFLQEYPHCDLGPLTQ-ECGCCYAYGPIKAMSHRICKAKNKK--TFLSAQFIVACDLL-ESGCEGGCSRSVYYFLEQHGVTDEECHPWSNQLNYSSEFCSKCKDGSQATLYKAKIGSTKQITSVQEIKKEIYLHGPVSASVAVTDRLKYYTGGLFED--PPRDYIADRTHTVEIIGWGQ-EKGIPYWIILNQYGRLWGENGMMRIRMGR-DDARVESYVLAAEPMIT--
A2ENW9/3-240           -----------------SPRGYA------------------------------------TNLS-DVHVDLPESYNFLEAYPHCDFGPLTQ-ECGCCYAYGALKAMSHRFCRATEKQ--LLLSAQYIVACDIA-DNGCVGGCERSVFYFMEQHGLTDYKCHPFQNRQEYGIKFCSQCSTSEKFKLYKSVYGSTTRYVGVEAIKKAVYLYGPVSASIATDSGFVNYHGGIYES--SYKGYIEAGNHAVELIGWGK-ENGVEYWILLNQHGKNWGINGTMHIKMGS-NEGLIESFIYGATPLI---
A0CYS7/65-352          -TRSSKKLTTAPVIDEEEIAAHNSLG-SYLQGPNDFFKDWKFSDAKFIFNNHLTFKGKIQQCP-ESGVIIPESYNFREAQPECAQPIYFQGNCSSSYSIAAVSATSDRLCKSKNGEFQDQLSPQSPISCDDK-NYKCGGGSVTRVLEVGKKQGFVSTSCLPYSGTEDAKNN-CDALFS----NCEKYKIHDYCVVSGEENIKREILNNGPIVAVIQVFKDFLVYKGGVYEV--VEGSSKFQYGHAVKVIGWGK-QDGVNYWVIENSWGDSWGLKGLAYVAVGQ-NQLQLEAYSVA--PIVAAS
A0CXI4/65-352          -TRSSKKLTTAPVIDEEEIAAHNSLG-SYLQGPNDFFKDWKFSDAKFIFNNHLTFKGKIQQCP-ESGVIIPESYNFREAQPECAQPIYFQGNCSSSYSIAAVSATSDRLCKSKNGEFQDQLSPQSPISCDDK-NYKCGGGSVTRVLEVGKKQGFVSTSCLPYSGTEDAKNN-CDALFS----NCEKYKIHDYCVVSGEENIKREILNNGPIVAVIQVFKDFLVYKGGVYEV--VEGSSKFQYGHAVKVIGWGK-QDGVNYWVIENSWGDTWGLKGLAYVAVGQ-NQLQLEAYSVA--PIVAAS
A0CGA3/56-337          FLSFTKQTKEYIIINESEIKSHNSQGHSYTLGPNAFFYNITLMQAKTLFKNDFTQQINVEKCKLSFMDETPVYYNFKEAYPQCNHQVYNQGNCSSSYSIAVSSSFSDRVCKQNQTQ---QLSAQNLLSCDGKLNLGCKGGHLTKSADYIIKHGLTTNECHPFKGDDTFKE--CTNALG----HCQRYKAESYCQLQNKDDIKRDILNKGPVVAIIPVYKDFLIYRDGIYQV--LEGQPHFHGGQAVKIIGWGE-QNGQQFWVIENTWGDTWGTNGLAKLAIDSFSEMAQQALSI---------
A0CE34/56-335          YLSFTKQTKEYIIINESEIKSHNSQGHSYNLGPNAFFYNITLMQAKTLFKNDFTQQINVEKCKLSFIEEIPVYYNFKEFYPQCNHQVYNQGNCSSSYSIAVSSSFSDRVCKQNQTQ---QLSAQNLLSCDGKLNLGCKGGHLTRSADYIIKHGLTTNECHPFRGDDTFKE--CTNALD----HCQRFKAESYCQLQNKDDIKRDILMKGPAVAIMPVYKDFLIYKDGIYQV--LDGQPHFHGGQAVKIIGWGE-HNGQQYWIIENTWGDTWGINGLAKISIDSFSEMSQQAL-----------
A0D203/57-332          -LSFTKQIKEYIIINQSEINSHNSQGYPYTLGPNNFFHNVTLMQAKTLFKNDFTQQINVEKCKVPINFEIPTYFNFKESYPNCSHTIFNQGNCSSSYSIAVSSAFSDRVCKLNQTQ---QLSAQNLLSCDGKLNQGCTGGHITRSAEYIIKHGLTTNECHPFRGDDNFQE--CTKALE----KCQRFKANSFCQLQNKDDIKRDIINRGPVVAIMQVYKDFLVYRDGVYQV--LEGTPRFHGGHAIKIIGWGE-QNGYQYWIIENTWGTSWGTEGLAKLAMDGFIDLSL--------------
#=GC scorecons         001112212111221224533432120121122212211011112211212112111222333044344594489947369594344539259666944554554759497434450014795944569923063693994344644534579444349495453334432094433400004445373364434353659974844399559463534474395595844003343433435767665999405593489764944933992596545466305433354423210412100
#=GC scorecons_70      ______________________________________________________________________*__***_*__*_*______*__*___*________*_*_**_________**_*___***___*__*_**___________**_____*_*___________*______________*__*_______*_***_*___**__*_*_____*__*__*_*______________***_*_***____*__****_*__*__**__**_____*_____________________
#=GC scorecons_80      ______________________________________________________________________*__***_*__*_*______*__*___*________*_*_**_________**_*____**______*_**____________*_____*_*___________*______________*____________**__*___**__*_______*__*__*_*______________*_*___***____*__**___*__*__**__*____________________________
#=GC scorecons_90      ______________________________________________________________________*__***____*_*______*__*___*__________*_*___________*_*____**______*_**____________*_____*_*___________*___________________________**__*___**__*__________*__*_*____________________***____*__**___*__*__**__*____________________________
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