# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/000178
#=GF DE Ubiquitin carboxyl-terminal hydrolase cyk-3
#=GF AC 3.90.70.10/FF/000178
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 78.422
#=GS Q8WT44/996-1178       AC Q8WT44
#=GS Q8WT44/996-1178       OS Caenorhabditis elegans
#=GS Q8WT44/996-1178       DE Ubiquitin carboxyl-terminal hydrolase cyk-3
#=GS Q8WT44/996-1178       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q8WT44/996-1178       DR GO; GO:0004843; GO:0005737; GO:0005815; GO:0009792; GO:0009992; GO:0016579; GO:0030010; GO:0031023; GO:1903673; GO:1904785; GO:2000251; 
#=GS Q8WT44/996-1178       DR EC; 3.4.19.12; 
#=GS T1FWA5/913-1054       AC T1FWA5
#=GS T1FWA5/913-1054       OS Helobdella robusta
#=GS T1FWA5/913-1054       DE Uncharacterized protein
#=GS T1FWA5/913-1054       DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS C3YDE0/1307-1465      AC C3YDE0
#=GS C3YDE0/1307-1465      OS Branchiostoma floridae
#=GS C3YDE0/1307-1465      DE Uncharacterized protein
#=GS C3YDE0/1307-1465      DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS H3DY57/1125-1322      AC H3DY57
#=GS H3DY57/1125-1322      OS Pristionchus pacificus
#=GS H3DY57/1125-1322      DE Uncharacterized protein
#=GS H3DY57/1125-1322      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A8X800/1011-1190      AC A8X800
#=GS A8X800/1011-1190      OS Caenorhabditis briggsae
#=GS A8X800/1011-1190      DE Protein CBR-CYK-3
#=GS A8X800/1011-1190      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5URR4/993-1172   AC A0A2G5URR4
#=GS A0A2G5URR4/993-1172   OS Caenorhabditis nigoni
#=GS A0A2G5URR4/993-1172   DE Uncharacterized protein
#=GS A0A2G5URR4/993-1172   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A261BH36/993-1172   AC A0A261BH36
#=GS A0A261BH36/993-1172   OS Caenorhabditis latens
#=GS A0A261BH36/993-1172   DE Uncharacterized protein
#=GS A0A261BH36/993-1172   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A1I7TES4/984-1168   AC A0A1I7TES4
#=GS A0A1I7TES4/984-1168   OS Caenorhabditis tropicalis
#=GS A0A1I7TES4/984-1168   DE Uncharacterized protein
#=GS A0A1I7TES4/984-1168   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS E3NH01/989-1168       AC E3NH01
#=GS E3NH01/989-1168       OS Caenorhabditis remanei
#=GS E3NH01/989-1168       DE CRE-CYK-3 protein
#=GS E3NH01/989-1168       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS G0MLI7/990-1172       AC G0MLI7
#=GS G0MLI7/990-1172       OS Caenorhabditis brenneri
#=GS G0MLI7/990-1172       DE Uncharacterized protein
#=GS G0MLI7/990-1172       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2A6BP83/1070-1267  AC A0A2A6BP83
#=GS A0A2A6BP83/1070-1267  OS Pristionchus pacificus
#=GS A0A2A6BP83/1070-1267  DE Cyk-3
#=GS A0A2A6BP83/1070-1267  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A2G5USL9/990-1169   AC A0A2G5USL9
#=GS A0A2G5USL9/990-1169   OS Caenorhabditis nigoni
#=GS A0A2G5USL9/990-1169   DE Uncharacterized protein
#=GS A0A2G5USL9/990-1169   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 12
Q8WT44/996-1178               ------DWLPIALYLRYNHSQEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQCDRCEKKTMRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVDKPDGNT--------YECIALANHYGQLSCGHFIAYAKSNEDK------WLLLNDCSVREVSEEEVDKQGAYLLFYERKDVK----
T1FWA5/913-1054               AYCLSIDWQPTALHLRYKPAHSLV--EHESVEKTRHSTNEAITLDTCLHAFTSEEHLNNRELYFCSKCKQHRYAVKKLDLWSLPPILIIHLKRFQFY--NSRWFKSQKVVQFPIRNFDLSPYIVKNNNNN----------------------------NNNNNNNN---------------NSYSNNDC--------------------
C3YDE0/1307-1465              ----------TALHLRYQESQEKVFEEHESVAASRRAQSEPIDLDTCLKAFTKEEELGEEERWYCSKCQEHQLAAKKLDIWRLPPILIVHMKRFQFL--NGRWCKSHKIVKFPMKNFDPSPFLVPRDPQKIR----ELYR-KELETH-----------RVRTASQE---------------TSMSSSSLHKAGSLTSLHSE-------G
H3DY57/1125-1322              ---------PIALYLKYNHSRSEAYSEDPSISAARDAHIRPSSLDNCLRKFAAYETL--DDLMQCKRCKKKTKWDKHMDIWKLPRYLIVQLKRFEYIREEGRKAKCKRVIDFPLSSFDASPYVKGGRGETERREEHQVYDCIALANHYGDLDSGHFIAYARSGEEREDGEQGWLLLNDCTVREVSESDIDKKGAYLLFYERRRRHSMVG
A8X800/1011-1190              ---------PIALYLRYNHSEEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQCDRCEKKTTRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVDKPDGNT--------YECIALANHYGQLSCGHFIAYAKSNEDK------WLLLNDCSVREVSEEEVDKQGAYLLFYERKDVK----
A0A2G5URR4/993-1172           ---------PIALYLRYNHSEEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQCDRCEKKTTRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVDKPDGNT--------YECIALANHYGQLSCGHFIAYAKSNEDK------WLLLNDCSVREVSEEEVDKQGAYLLFYERKYVK----
A0A261BH36/993-1172           ---------PIALYLRYNHSQEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQCDRCEKKTIRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVDKPDGNT--------YECIALANHYGQLSCGHFIAYAKSNEDK------WLLLNDCSVREVSEEEVDKQGAYLLFYERKDVK----
A0A1I7TES4/984-1168           ------DWLPIALYLRYNHSQEQACEDDPSVEETWSRHFAPSSLEHCLEKFSCPETL--DAAIQCDRCEKKTMRDKVMTIWKLPKYIIIHLKRFEFLREQGRMGKCKRTVNFPLQHFDPAPFVDKPDGNT--------YECIALANHYGQLSCGHFIAYAKSNEDK------WLLLNDCSVREVSEEEVDKQGAYLLFYERKDVKN--S
E3NH01/989-1168               ---------PIALYLRYNHSQEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQCDRCEKKTMRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVDKPDGNT--------YECIALANHYGQLSCGHFIAYAKSNEDK------WLLLNDCSVREVSEEEVDKQGAYLLFYERKDVK----
G0MLI7/990-1172               --------LPIALYLRYNHSQEQACEDDPSVEETWSRHFAPSSLEHCLEKFSCPETL--DAAIQCDRCEKKTMRDKVMTIWKLPKYIIIHLKRFEFLREQGRMGKCKRTVNFPLQHFDPAPFVDKPDGNT--------YECIALANHYGQLSCGHFIAYAKSNEDK------WLLLNDCSVREVSEEEVDKQGAYLLFYERKDVKN--S
A0A2A6BP83/1070-1267          ---------PIALYLKYNHSRSEAYSEDPSISAARDAHIRPSSLDNCLRKFAAYETL--DDLMQCKRCKKKTKWDKHMDIWKLPRYLIVQLKRFEYIREEGRKAKCKRVIDFPLSSFDASPYVKGGRGETERREEHQVYDCIALANHYGDLDSGHFIAYARSGEEREDGEQGWLLLNDCTVREVSESDIDKKGAYLLFYERRRRHSMVG
A0A2G5USL9/990-1169           ---------PIALYLRYNHSEEQACEDDPSVAETWSRHFAPSSLEHCIEKFSCPETL--DAAIQCDRCEKKTTRDKVMTIWKLPKYLIIHLKRFEFLREQGRMGKCKRTVNFPLKHFDPAPFVDKPDGNT--------YECIALANHYGQLSCGHFIAYAKSNEDK------WLLLNDCSVREVSEEEVDKQGAYLLFYERKYVK----
#=GC scorecons                00000000066997979557554634755974455445347559749645953395900544349479566524493657959945797779996753357933966757499644995697634355550000000053344544533232233333555555550000003333333235559545445354444454421220001
#=GC scorecons_70             ___________******__*______*__**_________*__**_**__*___*_*_______*_**_______*_*_**_**__**********____**__*__*_*_***__**__***_____________________________________________________________*________________________
#=GC scorecons_80             ___________**_***____________**____________*__*___*___*_*_______*__*_______*___**_**__**_*****_*_____*__*____*_**___**__**______________________________________________________________*________________________
#=GC scorecons_90             ___________**_*_*____________*_____________*__*___*___*_*_______*__*_______*____*_**___*___***_______*__*______**___**__*_______________________________________________________________*________________________
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