# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/000164
#=GF DE Cysteine protease Mir1
#=GF AC 3.90.70.10/FF/000164
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 68.175
#=GS Q0J0J4/18-349      AC Q0J0J4
#=GS Q0J0J4/18-349      OS Oryza sativa Japonica Group
#=GS Q0J0J4/18-349      DE Os09g0497500 protein
#=GS Q0J0J4/18-349      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A0A1D6ESI5/41-377  AC A0A1D6ESI5
#=GS A0A1D6ESI5/41-377  OS Zea mays
#=GS A0A1D6ESI5/41-377  DE Cysteine proteinases superfamily protein
#=GS A0A1D6ESI5/41-377  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS I1J2L4/19-350      AC I1J2L4
#=GS I1J2L4/19-350      OS Brachypodium distachyon
#=GS I1J2L4/19-350      DE Uncharacterized protein
#=GS I1J2L4/19-350      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS A0A1B6QDF1/39-379  AC A0A1B6QDF1
#=GS A0A1B6QDF1/39-379  OS Sorghum bicolor
#=GS A0A1B6QDF1/39-379  DE Uncharacterized protein
#=GS A0A1B6QDF1/39-379  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; 
#=GS A0A0E0QT98/19-350  AC A0A0E0QT98
#=GS A0A0E0QT98/19-350  OS Oryza rufipogon
#=GS A0A0E0QT98/19-350  DE Uncharacterized protein
#=GS A0A0E0QT98/19-350  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS I1QQ42/19-350      AC I1QQ42
#=GS I1QQ42/19-350      OS Oryza glaberrima
#=GS I1QQ42/19-350      DE Uncharacterized protein
#=GS I1QQ42/19-350      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0E0B4U5/19-350  AC A0A0E0B4U5
#=GS A0A0E0B4U5/19-350  OS Oryza glumipatula
#=GS A0A0E0B4U5/19-350  DE Uncharacterized protein
#=GS A0A0E0B4U5/19-350  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; 
#=GS A0A0E0E8H9/19-355  AC A0A0E0E8H9
#=GS A0A0E0E8H9/19-355  OS Oryza meridionalis
#=GS A0A0E0E8H9/19-355  DE Uncharacterized protein
#=GS A0A0E0E8H9/19-355  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0E0M2X7/17-346  AC A0A0E0M2X7
#=GS A0A0E0M2X7/17-346  OS Oryza punctata
#=GS A0A0E0M2X7/17-346  DE Uncharacterized protein
#=GS A0A0E0M2X7/17-346  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; 
#=GS J3MYU0/19-346      AC J3MYU0
#=GS J3MYU0/19-346      OS Oryza brachyantha
#=GS J3MYU0/19-346      DE Uncharacterized protein
#=GS J3MYU0/19-346      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; 
#=GS A0A0E0ILQ8/18-350  AC A0A0E0ILQ8
#=GS A0A0E0ILQ8/18-350  OS Oryza sativa f. spontanea
#=GS A0A0E0ILQ8/18-350  DE Uncharacterized protein
#=GS A0A0E0ILQ8/18-350  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS B8BD35/18-350      AC B8BD35
#=GS B8BD35/18-350      OS Oryza sativa Indica Group
#=GS B8BD35/18-350      DE Uncharacterized protein
#=GS B8BD35/18-350      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A0A1D6LPA3/24-379  AC A0A1D6LPA3
#=GS A0A1D6LPA3/24-379  OS Zea mays
#=GS A0A1D6LPA3/24-379  DE Insect resistance1
#=GS A0A1D6LPA3/24-379  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS Q9SX19/23-374      AC Q9SX19
#=GS Q9SX19/23-374      OS Zea mays
#=GS Q9SX19/23-374      DE Cysteine protease Mir1
#=GS Q9SX19/23-374      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GF SQ 14
Q0J0J4/18-349              ------------------GAALARADLMLDR-FEQWMIRHGR-----------AYTDAG-EKQR--RFEVYRRNVELVETFNSMSN-G---YKLADNKFADLTNEEFRAKMLGF-RP--------HVTIPQISNTC-SADIAM-PGESSDDILPKSVDWRKKGAVVEVKNQG-DCGSCWAFSAVAAIEGINQIKNGELVSLSEQELVDCDDE-AVGCGGGYMSWAFEFVVGNHGLTTEASYPYHAANGACQAAKL-NQSAVAIAGYRNVTPSSEPDLARAAAAQPVSVAVDGGSFMFQLYGSGVYTGPCTADVNHGVTVVGYGESEPKTD----GGGAAKGGEKYWIVKNSWGAEWGDAGYILMQRDVAGLASGLCGIALLPSYPVM-
A0A1D6ESI5/41-377          ------------------AALVARADPMLER-FEQWMGRHGR-----------LYADAG-EKQR--RLEVYRRNVELVETFNSMGN-G---YRLADNKFADLTNEEFRAKMLGFGRPRSGGGA-GHSTAPSTVA-CIGSGL---MGRQGYSDLPKSVDWREKGAVAPVKSQG-DCGSCWAFSAVAAIEGINQIKNGKLVSLSEQELVDCDTK-AIGCAGGYMSWAFEFVMKNRGLTTERNYPYQGLNGACQTPKL-KESAVSISGYMNVTPSSEPDLLRAAAAQPVSVAVDAGSFVWQLYGGGVFTGPCTAELNHGVTVVGYGETQGDTD----GDGSGVPGKKYWIVKNSWGPEWGDAGYILMQRE-ASVASGLCGIAMLPSYPVM-
I1J2L4/19-350              ---AAATGMPIASSSGQI-----RSEEETRRMYAEWTAQHGS-----------PITN---EEEG--RYEAFRDNLRYIDEHNAAADAGIHSFRLGLNRFAGLTNEEYRAAYLGL-RLRS--GAVGDLRKPSARY-----------EAADGEALPESVDWREKGAVGKVKDQGRSCGSAWAFSAIAAVESINQIVTGELISLSEQELMDCDTSYNAGCDGGLMDDAFEFIISNGGIDTDEDYPYKARNDSCDANKR-NRKAVTIDDYEDLR-MNEKSLQKAVSNQPVSVAIEAGGRDFQLYKSGIFTGTCGTDLDHATTIVGYGSE---------------NGTDYWIVKESYGTSWGESGYARMERN-IKETSGKCGIAMLPSYPVKN
A0A1B6QDF1/39-379          -----------ACG----AAALARADPMLER-FEQWMGRHGR-----------LYADAG-EKQR--RLEVYRRNVALVETFNSMSNGG---YRLADNKFADLTNEEFRAKMLGFGRPPPHGRATGHTTTPGTVA-CIGSGL----GRRYSDELPKSVDWREKGAVAPVKNQG-ECGSCWAFSAVAAIEGINQIKNGKLVSLSEQELVDCDTK-AIGCAGGYMSWAFEFVMNNSGLTTERNYPYQGMNGACQTPKL-KESAVSISGYVNVTASSEPDLLRAAAAQPVSVAVDAGSFVWQLYGGGVFTGPCTADLNHGVTVVGYGETQRDTD----GDGTGVPGQKYWIVKNSWGPEWGDAGYILMQRE-ASVASGLCGIALLPSYPVM-
A0A0E0QT98/19-350          ------------------GAALARADLMLDR-FEQWMIRHGR-----------AYTDAG-EKQR--RFEVYRRNVELVETFNSMSN-G---YKLADNKFADLTNEEFRAKMLGF-RP--------HVTIPQISNTC-SADIAM-PGESSDDILPKSVDWRKKGAVVEVKNQG-DCGSCWAFSAVAAIEGINQIKNGELVSLSEQELVDCDDE-AVGCGGGYMSWAFEFVVGNHGLTTEASYPYHAANGACQAAKL-NQSAVAIAGYRNVTPSSEPDLARAAAAQPVSVAVDGGSFMFQLYGSGVYTGPCTADVNHGVTVVGYGESEPKTD----GGGAAKGGEKYWIVKNSWGAEWGDAGYILMQRDVAGLASGLCGIALLPSYPVM-
I1QQ42/19-350              ------------------GAALARADLMLDR-FEQWMIRHGR-----------AYTDAG-EKQR--RFEVYRRNVELVETFNSMSN-G---YKLADNKFADLTNEEFRAKMLGF-RP--------HVTIPQISNTC-SADIAM-PGESSDDILPKSVDWRKKGAVVEVKNQG-DCGSCWAFSAVAAIEGINQIKNGELVSLSEQELVDCDDE-AVGCSGGYMSWAFEFVVGNHGLTTEASYPYHAANGACQAAKL-NQSAVAIAGYRNVTPSSEPDLARAAAAQPVSVAVDGGSFMFQLYGSGVYTGPCTADVNHGVTVVGYGESEPKTD----GGGAAKGGEKYWIVKNSWGAEWGDAGYILMQRDVAGLASGLCGIALLPSYPVM-
A0A0E0B4U5/19-350          ------------------GAALARADLMLDR-FEQWMIRHGR-----------AYTDAG-EKQR--RFEVYRRNVELVETFNSMSN-G---YKLADNKFADLTNEEFRAKMLGF-RP--------HVAIPQISNTC-SADIAM-PGESSDDILPKSVDWRKKGAVVEVKNQG-DCGSCWAFSAVAAIEGINQIKNGELVSLSEQELVDCDDE-AVGCGGGYMSWAFEFVVGNHGLTTEASYPYHAANGACQAAKL-NQSAVAIAGYRNVTPSSEPDLERAAAAQPVSVAVDGGSFMFQLYGSGVYTGPCTADVNHGVTVVGYGESEPKTD----GGGAAKGGEKYWIVKNSWGAEWGDAGYILMQRDVAGLASGLCGIALLPSYPVM-
A0A0E0E8H9/19-355          -----------------IGAALARAELMLDR-FEQWMIRHGR-----------AYTDAG-EKQR--RFEVYRRNVELVETFNSMSN-G---YKLADNKFADLTNEEFRAKMLGF-RP--------HVAIPQISNTC-SADIAM-PGESSDDILPKSVDWRKKGAVVEVKNQG-DCGSCWAFSAVAAIEGINQIKNGELVSLSEQELVDCDDE-AVGCGGGYMSWAFEFVVGNHGLTTEASYPYQAANGACQAAKL-NQSAVAIAGYRNVTPSSEPDLARAAAAQPVSVAVDGGSFMFQLYGSGVYTGPCTADVNHGVTVVGYSESEPKTDGGGGGGGAAKGGEKYWIVKNSWGPEWGDAGYILMQRDVAGLASGLCGIALLPSYPVM-
A0A0E0M2X7/17-346          -----------------IGAALASADLMLDR-FEQWMIRHGR-----------AYTDAG-EKQR--RFEVYRRNVELVEKFNSMSN-G---YKLADNKFADLTNEEFRSKMLGF-RP--------HVAIPQISNTC-SADIAM-PGESSGDILPKSVDWRKKGAVVEVKNQG-DCGSCWAFSAVAAIEGINKIKNGELVSLSEQELVDCDDE-AVGCGGGYMSWAFEFVVGNHGLTTEASYPYHAANGACQAAKL-NQSAVSIAGYRNVTPSSEHELARAAAAQPVSVAVDAGSFMFQLYGSGVYTGPCTADVNHGVTVVGYGEAEPTTD----AGA---DGEKYWIVKNSWGPEWGDAGYILMQRDVAGVASGLCGIALLPSYPVM-
J3MYU0/19-346              -------------------AALGHADLMLDR-FEQWMSRHGC-----------AYADAG-EKQR--RFEVYRRNVELVEKFNSMSD-G---YKLADNKFADLTNEEFRAKMLGF-RP--------HVAIPQTLNTCISADRAM-LGESGDDVLPKSVDWRKKGAVVPVKNQG-DCGSCWAFSAVAAIEGINQIKNGELVSLSEQELVDCDDE-AVGCGGGYMSWAFEFVVGNRGLATEASYPYHAAGGACQAAKL-NESAVSIAGYRNVTPSSEPDLLRAAAAQPVSVAVDAGSFMFQLYGSGVYTGPCTAEVNHGVTVVGYGEAEPTDA----AGG---GGAKYWIVKNSWGPEWGDAGYILMQRD-AGVASGLCGIALLPSYPVM-
A0A0E0ILQ8/18-350          -----------------IGAALTRADLMLDR-FEQWMIRHGR-----------AYTDSG-EKQR--RFEVYRRNVELVETFNSMSN-G---YKLADNKFADLTNEEFRAKMLGF-RP--------HVTIPQISNTC-SADIAM-PGESSDDILPKSVDWRKKGAVVEVKNQG-DCGSCWAFSAVAAIEGINQIKNGELVSLSEQELVDCDDE-AVGCGGGYMSWAFEFVVGNHGLTTEASYPYHAANGACQAAKL-NQSAVAIAGYRNVTPSSEPDLARAAAAQPVSVAVDGGSFMFQLYGSGVYTGPCTADVNHGVTVVGYGESEPKTD----GGGAAKGGEKYWIVKNSWGAEWGDAGYILMQRDVAGLASGLCGIALLPSYPVM-
B8BD35/18-350              -----------------IGAALTRADLMLDR-FEQWMIRHGR-----------AYTDSG-EKQR--RFEVYRRNVELVETFNSMSN-G---YKLADNKFADLTNEEFRAKMLGF-RP--------HVTIPQISNTC-SADIAM-PGESSDDILPKSVDWRKKGAVVEVKNQG-DCGSCWAFSAVAAIEGINQIKNGELVSLSEQELVDCDDE-AVGCGGGYMSWAFEFVVGNHGLTTEASYPYHAANGACQAAKL-NQSAVAIAGYRNVTPSSEPDLARAAAAQPVSVAVDGGSFMFQLYGSGVYTGPCTADVNHGVTVVGYGESEPKTD----GGGAAKGGEKYWIVKNSWGAEWGDAGYILMQRDVAGLASGLCGIALLPSYPVM-
A0A1D6LPA3/24-379          -ATAAARHFYTTTTTTRVPAPAERADEEVRRMYEAWKSKHGRGGSSNDDCDMAPGDDEQ-EEDRRLRLEVFRDNLRYIDKHNAEADAGLHTFRLGLTPFADLTLDEYRGRVLGF-RARA--------RRSGARY---GHGHGYRARPRGGDLLPDAIDWRQLGAVTEVKDQQ-QCGGCWAFSAVAAIEGINAIATGNLVSLSEQEIIDCDAQ-DSGCDGGQMENAFRFVIGNGGIDTEADYPFIGTDGTCDASKENNEKVATIDGLVEVASNNETALQEAVAIQPVSVAIDASGRAFQHYSSGIFNGPCGTSLDHGVTAVGYGSE---------------SGKDYWIVKNSWSASWGEAGYIRMRRN-VPRPTGKCGIAMDASYPVKD
Q9SX19/23-374              AATAAARHSY-TTTTTRVPAPAERADEEVRRMYEAWKSKHGRGGSSNDDCDMAPGDDEQEEEDRRLRLEVFRDNLRYIDAHNAEADAGLHTFRLGLTPFADLTLEEYRGRVLGF-RARG--------RRSGARY---GSGYSV----RGGD-LPDAIDWRQLGAVTEVKDQQ-QCGGCWAFSAVAAIEGVNAIATGNLVSLSEQEIIDCDAQ-DSGCDGGQMENAFRFVIGNGGIDTEADYPFIGTDGTCDASKEKNEKVATIDGLVEVASNNETALQEAVAIQPVSVAIDASGRAFQHYSSGIFNGPCGTSLDHGVTAVGYGSE---------------SGKDYWIVKNSWSASWGEAGYIRMRRN-VPRPTGKCGIAMDASYPVKD
#=GC scorecons             0001110000010000023643377734559177594469960000000000054573409657009597795965577459645619010779646599799589796659970951100000032436453413043422202434447299567999559994599596059967999998998978959469598999999669994405499499495499698659496598559973646759574940755665947635754569449459675999999786664479595797769795656697795999854221220000222111494599999797655997799749595154356949999656999950
#=GC scorecons_70          ___________________*___***____*_**_*__****______________*___*__*__*_****_**__**__*___*_*___***__*_*****_****___***_*_____________*____________________*_**_*****__***__**_*___*****************_*__*_*************_____**_**_*__******_*_**_**__***___**_*_*_*__*__**_*_*___*____*__*__*_*_**********___**_*_********_*_******_****__________________*__*********__*******_*_*______**_*****_*****__
#=GC scorecons_80          _______________________***____*_**_*___**_______________*___*__*__*_****_*_______*_____*___*_*____*****_****___***_*__________________________________*_**__****__***__**_*___**_**************_*__*_********__***_____**_**_*__**_**__*_*__**__***____*_*_*_*__*_____*_*___*____*__*__*_*_******_*______*_*_**_*_***_____****_****__________________*__********___**_****_*_*_______*_****___****__
#=GC scorecons_90          ______________________________*____*___**___________________*_____*_*__*_*_______*_____*_____*____**_**__*_*___**__*____________________________________**___***__***__**_*___**__*****_**_*__*_*__*_*_******__***_____**_**_*__**_*___*_*__*___**_______*___*________*__________*__*__*___******________*_*__*___*_*_____*__*_****__________________*__*****_*____**__**__*_*_______*_****___****__
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