# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/000145
#=GF DE Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
#=GF AC 3.90.70.10/FF/000145
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 84.039
#=GS Q38F03/107-482              AC Q38F03
#=GS Q38F03/107-482              OS Trypanosoma brucei brucei TREU927
#=GS Q38F03/107-482              DE Ubiquitin carboxyl-terminal hydrolase, putative
#=GS Q38F03/107-482              DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q38F03/107-482              DR GO; GO:0004197; GO:0005737; GO:0006511; GO:0031981; GO:0097014; 
#=GS A0A225WQY2/93-344_421-528   AC A0A225WQY2
#=GS A0A225WQY2/93-344_421-528   OS Phytophthora megakarya
#=GS A0A225WQY2/93-344_421-528   DE Uncharacterized protein
#=GS A0A225WQY2/93-344_421-528   DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora megakarya; 
#=GS A2G6C6/148-448              AC A2G6C6
#=GS A2G6C6/148-448              OS Trichomonas vaginalis
#=GS A2G6C6/148-448              DE Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
#=GS A2G6C6/148-448              DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS W2QWR6/99-356_431-536       AC W2QWR6
#=GS W2QWR6/99-356_431-536       OS Phytophthora parasitica INRA-310
#=GS W2QWR6/99-356_431-536       DE Uncharacterized protein
#=GS W2QWR6/99-356_431-536       DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS A0A0W8DK02/99-356_431-536   AC A0A0W8DK02
#=GS A0A0W8DK02/99-356_431-536   OS Phytophthora nicotianae
#=GS A0A0W8DK02/99-356_431-536   DE Ubiquitin carboxyl-terminal hydrolase 47
#=GS A0A0W8DK02/99-356_431-536   DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora nicotianae; 
#=GS A0A329SMT3/101-358_432-538  AC A0A329SMT3
#=GS A0A329SMT3/101-358_432-538  OS Phytophthora cactorum
#=GS A0A329SMT3/101-358_432-538  DE Uncharacterized protein
#=GS A0A329SMT3/101-358_432-538  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora cactorum; 
#=GS H3GQU9/215-472_548-656      AC H3GQU9
#=GS H3GQU9/215-472_548-656      OS Phytophthora ramorum
#=GS H3GQU9/215-472_548-656      DE Uncharacterized protein
#=GS H3GQU9/215-472_548-656      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora ramorum; 
#=GS W2W0D1/99-356_431-536       AC W2W0D1
#=GS W2W0D1/99-356_431-536       OS Phytophthora parasitica CJ01A1
#=GS W2W0D1/99-356_431-536       DE Uncharacterized protein
#=GS W2W0D1/99-356_431-536       DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2K7J0/99-356_431-536       AC W2K7J0
#=GS W2K7J0/99-356_431-536       OS Phytophthora parasitica
#=GS W2K7J0/99-356_431-536       DE Uncharacterized protein
#=GS W2K7J0/99-356_431-536       DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS V9E4S6/99-356_431-536       AC V9E4S6
#=GS V9E4S6/99-356_431-536       OS Phytophthora parasitica P1569
#=GS V9E4S6/99-356_431-536       DE Uncharacterized protein
#=GS V9E4S6/99-356_431-536       DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2MDD5/99-356_431-536       AC W2MDD5
#=GS W2MDD5/99-356_431-536       OS Phytophthora parasitica
#=GS W2MDD5/99-356_431-536       DE Uncharacterized protein
#=GS W2MDD5/99-356_431-536       DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2FUQ7/99-356_431-536       AC W2FUQ7
#=GS W2FUQ7/99-356_431-536       OS Phytophthora parasitica
#=GS W2FUQ7/99-356_431-536       DE Uncharacterized protein
#=GS W2FUQ7/99-356_431-536       DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2YAV7/98-356_431-536       AC W2YAV7
#=GS W2YAV7/98-356_431-536       OS Phytophthora parasitica P10297
#=GS W2YAV7/98-356_431-536       DE Uncharacterized protein
#=GS W2YAV7/98-356_431-536       DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS A0A080Z8F3/99-356_431-536   AC A0A080Z8F3
#=GS A0A080Z8F3/99-356_431-536   OS Phytophthora parasitica P1976
#=GS A0A080Z8F3/99-356_431-536   DE Uncharacterized protein
#=GS A0A080Z8F3/99-356_431-536   DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS A2EEL3/122-426              AC A2EEL3
#=GS A2EEL3/122-426              OS Trichomonas vaginalis
#=GS A2EEL3/122-426              DE Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
#=GS A2EEL3/122-426              DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A2DDI7/163-478_521-535      AC A2DDI7
#=GS A2DDI7/163-478_521-535      OS Trichomonas vaginalis
#=GS A2DDI7/163-478_521-535      DE Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
#=GS A2DDI7/163-478_521-535      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A2FU72/169-482              AC A2FU72
#=GS A2FU72/169-482              OS Trichomonas vaginalis
#=GS A2FU72/169-482              DE Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase
#=GS A2FU72/169-482              DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GF SQ 17
Q38F03/107-482                      ----PVPFVGLINEGCTCYLNSLLQMLFHLCYFRNAVYLTPT---------------------DANDESCSIPRALQSVFHEMEI-RRTPVHTKKLTAAFDWTESELYSQHDIQEMATLLRDNLEERMKGSVSEGAINRMFEGYGEQVVATLDKSFCSRSRDTFYDIHLPLEG------HTNLMDSLRSLTARDMLVGDNKYRVEEP-GREPQYKDAQKSYEFRRFPPVIWFHLKRFEMDLTSPILETKKVNSYLEFPVELSLEELEHETPSNWGEYATQVFAGDMGDEKKMTGDDGGEKRKRRKGDNEVATAIARPF-SRDTPAVYDLQGVIVHKGSVRSGHYYCYIREWDATEKRFTRWLEFDDERVTVVSQEVAVNDNFGVPVPTEGRPLWHMPTNNAYMLSYVRRA
A0A225WQY2/93-344_421-528           YSRSRNAFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTCH-AAKMV--------DEDKEEETDEDEENIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKSFKDTVNETLVNDLYQGALKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLRPEMLEKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVE-EEEDDDVDG--------ATSFDTWNPTFDPDVMTKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLETGKWYNFNDSNVSEIS-DSELKTAFGGASGSG---YSARYSTCAYMLLY-RLV
A2G6C6/148-448                      -----VGLVGLTNLGATCYLNSMLQCLFHTPAFRRAVYDMPT--------------------DGTEDVKTSIAYSLQRLFTLMQM-SPLTPSTQELTTSFGWGITDQFSQHDVQEFLRVLVDNLEKKLKKTDKKDAFANIFRGKTTNKLFVEKFDYKDDHKEEFYDIELVVRN------NRDLVQAIREYTKAEVI---DEYKVENK-GV----SQAIKTTKFWQLPNVLHFLLQRFEYNPMGN--GMIKVNDRFEFPDELDMKE----------------FMDPESEDKDT---------------------------------VYDLFGVLIHIGFANAGHYEAMMK-------IEGNWYLFNDDEVTKVP-ESTVRTTFGGENTYG----------SAYFVTYVRRS
W2QWR6/99-356_431-536               -NRPRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESQEQEDKEEDDEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
A0A0W8DK02/99-356_431-536           -NRPRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESQEQEDKEEDDEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
A0A329SMT3/101-358_432-538          ---PRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSYGAVKKTVEQSDEQEDKEEDEEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKSFKGTVNENLVNDLYQGSLKDYVQCCDCGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLRPEVLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVDGNEE--DADG--------ATSFDTWSPTFDPDVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLETGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
H3GQU9/215-472_548-656              YSRARNAFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTCRHAAKKA--ELTEQEE-DEDSDEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKSFKGTVNETLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLRPEVLDKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNEVTFPKYLDMNS----------------YVEEEEEEDDVEG--------AASFDTWSSIFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLETGKWYNFNDSNVSEIS-DTELKTAFGGASGSG---YSMRYSTCAYMLLY-RLV
W2W0D1/99-356_431-536               -NRPRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESQEQEDKEEDDEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
W2K7J0/99-356_431-536               -NRPRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESQEQEDKEEDDEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
V9E4S6/99-356_431-536               -NRPRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESEEQEDKEEDEEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
W2MDD5/99-356_431-536               -NRPRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESEEQEDKEEDEEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
W2FUQ7/99-356_431-536               -NRPRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESQEQEDKEEDDEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
W2YAV7/98-356_431-536               YNRSRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESEEQEDKEEDDEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
A0A080Z8F3/99-356_431-536           -NRPRKVFTGLSNQGATCYMNSLLQSMFMTPEFRQGLYNWTSHRSAKRL--ESQEQEDKEEDDEEEADEDNIPLQLQNLFAKLQLTTQDSISTKALTKSFGWTGADVFQQHDVQELCRVLLDALEKTFKGTVNENLVNDLYQGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMKTVEEAIELFLKPEMLNKENQWMCDRCKVK----RDAIKGLKFSKLPYILMLQLKRFDFDYATM--NRIKLHNKVTFPKYLDMNS----------------YVI-NEE--DADG--------ASSFDTWSPTFDPEVMIKRSGPHVYELYSVLIHSGSALGGHYYAYIK-----SLDTGKWYNFNDSNVSEIS-DTELQNAFGGASGSG---YSMRYSTCAYMLLY-RLV
A2EEL3/122-426                      ISKNETGFVGLINQGATCYMNSMLQALYSITAFRRMIYNMPT--------------------AGTDDIEKSIPLNLQHLFYYMQT-STTAVTTKYLTRSFGWDAIETGFQQDIQEFCRVLLDNLETKLTKAGRKDEISQMFRGKMQKVIKAVDCPYVSTKDDYFYDITLTVDG------YKTLEESLESLFASFEY---SDYNTESEYGR----RTVSVSDKLVELPPILFFHLSRFVYDNFG---NISKLNSRFEFPKELDLSK----------------YIEDS---------------------------------------LYELTGVLVHSGSVNGGHYYAFLK-----PTEEPKWYRFDDSLVTLEKEDAAIRDNFGSNERYG--------GTSAYYLIYTKKN
A2DDI7/163-478_521-535              -----TGYVGLENQGATCYMNSMLQMLYHLPAFRQIVYDLPT--------------------AEIEDPERSIPLQLQMLFYNLEF-SSQAVSTKDLTKSFGWKPQDIMVQHDVQEFNRILMSTLEEKLKGTESEKKISSLFTGKNQNAIRCVNIDYESFTETPFTDLQLHVQG------NRTLDEAFEGYLAVDRLEGSNQYNVPGH-GK----QDADICMEITELPTVLQLHLNRFTYDFDRD--QIVKINDWFEYPESIDLSK----------------YVTKKQENKKSDK--------EAKSDEYISKSDKEEV--KSDSQIYDLVGVLVHSGTNYSGHYYAYIK-----PEIDGDWYEFNDSVVRKAKKDEVFKANFGQNDRTV--------DHSAYLLIYVNR-
A2FU72/169-482                      YSKDETGYVGLQNQGATCYMNSMLQALYHIPEFRRLIYQMDV--------------------NSIEGANKDIPINLQRLFCQLQF-SDTAPNTKALTKSFGWNSLATFIQHDVQEFARILIDKIELKLNKTPLQGKIAEMFRGEFTSFVRCPDCGYESSTTESFYDISLEVKD------TKDLKISLKKYTEKELLTDENQYNIEGK-GR----FNAEKGIEFTKFPPILNFHLNRSEYDPEKE--QIVKIDSRFEFPESIDLNE----------------FLAENSDQKNS-------------------------------SQIYSLFGVLVHSGTVNYGHYCAFLR----TSSNDPQWYEFNDTCVQKVSKEKAVDDNYGGASNFS-----------GYYLIYVRNS
#=GC scorecons                      02213347599496979997996994674564995459435411111110011011111111354643535975499479436741544555984995797944464539897995476957489445656446436546759334436453555857443649496494654111111365645656355446462346654464325500004574653663579377365959756843430054596554558943776540000000000000000753143511432300000000222242222323222212332436969469779695534999676670000042345597497953944550744544589554445000221223347958491733
#=GC scorecons_70                   _______*_**_*************_**__*_**___*___________________________*_____**__**_**__**________**_**_****___*___******__***_*_**___*_*__*_____**_*_____*______*_*___*_*_**_*_*_________*_*__*_________*___*________________*____**__**_**_*_*_**__*_________*______**__***__________________*___________________________________________**_*__****_*____********___________**_***__*_____*______**_________________**_*_*_*__
#=GC scorecons_80                   _________**_*_********_**__*____**___*_________________________________**__**_**___*________**_**_****_______******__*_*_*_**_______________*_*____________*_*_____*_*__*_______________________________________________*________**_**___*_**__*_________*______**__**___________________*____________________________________________*_*__**_*_*____***_*__*___________**_*_*__*_____*______**_________________**_*_*_*__
#=GC scorecons_90                   _________**_*_*_***_**_**_______**___*_________________________________*___**__*____________*__**__*_*_______***_**____*____*_________________*____________*_______*_*__*_________________________________________________________*______*_*_____________*______**____________________________________________________________________*_*__*__*_*____***________________*__*_*__*____________**__________________*___*____
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