CATH Superfamily 3.90.640.60
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 2: Actin-like protein ARP9
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Structural molecule activity GO:0005198
The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
|
5 | Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
5 | Q05123 (/IPI) Q05123 (/IPI) Q05123 (/IPI) Q05123 (/IPI) Q05123 (/IPI) |
There are 8 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
|
5 | Q05123 (/IGI) Q05123 (/IGI) Q05123 (/IGI) Q05123 (/IGI) Q05123 (/IGI) |
|
Nucleosome disassembly GO:0006337
The controlled breakdown of nucleosomes, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
|
5 | Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) |
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
5 | Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) |
|
Transcription elongation from RNA polymerase II promoter GO:0006368
The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
|
5 | Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) |
|
Nucleosome positioning GO:0016584
Ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another.
|
5 | Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) |
|
Nucleosome mobilization GO:0042766
The movement of nucleosomes along a DNA fragment.
|
5 | Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) |
|
ATP-dependent chromatin remodeling GO:0043044
Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
|
5 | Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) |
|
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
5 | Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) Q05123 (/IMP) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
5 | Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) |
|
SWI/SNF complex GO:0016514
A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof.
|
5 | Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) |
|
RSC-type complex GO:0016586
A SWI/SNF-type complex that contains a bromodomain containing-protein, such as yeast Rsc1 or Rsc4 or mammalian PB1/BAF180. The RSC complex is generally recruited to RNA polymerase III promoters and is specifically recruited to RNA polymerase II promoters by transcriptional activators and repressors; it is also involved in non-homologous end joining
|
5 | Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) Q05123 (/IDA) |
