# STOCKHOLM 1.0
#=GF ID 3.90.260.10/FF/000008
#=GF DE DNA repair protein RAD4
#=GF AC 3.90.260.10/FF/000008
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 61.013
#=GS A9RJ60/1-154        AC A9RJ60
#=GS A9RJ60/1-154        OS Physcomitrella patens
#=GS A9RJ60/1-154        DE Predicted protein
#=GS A9RJ60/1-154        DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS Q7EY71/143-304      AC Q7EY71
#=GS Q7EY71/143-304      OS Oryza sativa Japonica Group
#=GS Q7EY71/143-304      DE Os08g0427500 protein
#=GS Q7EY71/143-304      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A0A1D6KPG6/129-288  AC A0A1D6KPG6
#=GS A0A1D6KPG6/129-288  OS Zea mays
#=GS A0A1D6KPG6/129-288  DE DNA repair protein RAD4
#=GS A0A1D6KPG6/129-288  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A0D9X810/165-325  AC A0A0D9X810
#=GS A0A0D9X810/165-325  OS Leersia perrieri
#=GS A0A0D9X810/165-325  DE Uncharacterized protein
#=GS A0A0D9X810/165-325  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS I1QIT6/143-304      AC I1QIT6
#=GS I1QIT6/143-304      OS Oryza glaberrima
#=GS I1QIT6/143-304      DE Uncharacterized protein
#=GS I1QIT6/143-304      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0E0LUU1/129-290  AC A0A0E0LUU1
#=GS A0A0E0LUU1/129-290  OS Oryza punctata
#=GS A0A0E0LUU1/129-290  DE Uncharacterized protein
#=GS A0A0E0LUU1/129-290  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; 
#=GS A0A0E0AVI8/147-308  AC A0A0E0AVI8
#=GS A0A0E0AVI8/147-308  OS Oryza glumipatula
#=GS A0A0E0AVI8/147-308  DE Uncharacterized protein
#=GS A0A0E0AVI8/147-308  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; 
#=GS A0A0D3H0F5/85-246   AC A0A0D3H0F5
#=GS A0A0D3H0F5/85-246   OS Oryza barthii
#=GS A0A0D3H0F5/85-246   DE Uncharacterized protein
#=GS A0A0D3H0F5/85-246   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS A0A0E0ELM9/111-272  AC A0A0E0ELM9
#=GS A0A0E0ELM9/111-272  OS Oryza meridionalis
#=GS A0A0E0ELM9/111-272  DE Uncharacterized protein
#=GS A0A0E0ELM9/111-272  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0E0QJ91/143-304  AC A0A0E0QJ91
#=GS A0A0E0QJ91/143-304  OS Oryza rufipogon
#=GS A0A0E0QJ91/143-304  DE Uncharacterized protein
#=GS A0A0E0QJ91/143-304  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A0E0IC31/147-308  AC A0A0E0IC31
#=GS A0A0E0IC31/147-308  OS Oryza sativa f. spontanea
#=GS A0A0E0IC31/147-308  DE Uncharacterized protein
#=GS A0A0E0IC31/147-308  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS A0A0E0ELM8/111-272  AC A0A0E0ELM8
#=GS A0A0E0ELM8/111-272  OS Oryza meridionalis
#=GS A0A0E0ELM8/111-272  DE Uncharacterized protein
#=GS A0A0E0ELM8/111-272  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0E0IC32/147-305  AC A0A0E0IC32
#=GS A0A0E0IC32/147-305  OS Oryza sativa f. spontanea
#=GS A0A0E0IC32/147-305  DE Uncharacterized protein
#=GS A0A0E0IC32/147-305  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS A0A0E0QJ92/143-305  AC A0A0E0QJ92
#=GS A0A0E0QJ92/143-305  OS Oryza rufipogon
#=GS A0A0E0QJ92/143-305  DE Uncharacterized protein
#=GS A0A0E0QJ92/143-305  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A1D6KPG4/129-285  AC A0A1D6KPG4
#=GS A0A1D6KPG4/129-285  OS Zea mays
#=GS A0A1D6KPG4/129-285  DE DNA repair protein RAD4
#=GS A0A1D6KPG4/129-285  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GF SQ 15
A9RJ60/1-154                -----------QEFAAQVHMAHLLCLLARGRIVSQSSDDSLLQAALVSLLPPRLL-PSADADRVTIGRVEHLVSWFKNQFRLLTPDEGPSRLHKEDAEALESRLQEVLQKQCGSAEELAALSVAMFRGLGYICRYVTILDVASIKPDAESLEASVDWDPSAPFCHS--------
Q7EY71/143-304              -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIA--------QSDDKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPR--LCTKALPSSSF-
A0A1D6KPG6/129-288          KKSVRRPSAEEKELAELVHKVHLLCLIARGRVVDKACYDTLIQASVLSLVPCHLLWSLVDVPNLKAVNLRSLVSWFHRTFCVTA--------QSTDRGSFESNLAFTIQDHVGTAEEICALSVALFRALNLPARFVTNLDVAGLKTDTKVKGTFSQDASR--LCTRALPC----
A0A0D9X810/165-325          -KTVRRLTAEEKELAELVHRAHLLCLLARGRVIDKSCDDPLIQASILSVLPQHVLWNSVDTPIMKANELRSLVSWFHRTFSVIA--------QSDDRGSFKSNLAFALQNHVGTAEEVCALSVALFRALNLTVRFVTNLDVAGLKPDTKSVGISYQDSPR--LCTKALPSSS--
I1QIT6/143-304              -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIA--------QSDNKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPR--LCTKALPSSSF-
A0A0E0LUU1/129-290          -KTVRRLTAEEKELAELVHRVHLLCLLARGRLIDKACNDPLIQASILSVLPQHVLWNSVDTPILKADELRTLVSWFHRTFCVIA--------QSDDRGSFKSNLAFALQSHVGTAEEVCALSVALFRALNLTARFVTNLDVAGLKPDTKSMGTSNQDAPR--LCTKALPSSSF-
A0A0E0AVI8/147-308          -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIA--------RSDDNGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPR--LCTKALPSSSF-
A0A0D3H0F5/85-246           -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIA--------QSDNKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPR--LCTKALPSSSF-
A0A0E0ELM9/111-272          -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACDDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIA--------QSDDRGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPR--LCTKALPSSSF-
A0A0E0QJ91/143-304          -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIA--------QSDDKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPR--LCTKALPSSSF-
A0A0E0IC31/147-308          -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIS--------QSDDKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVACLKPDTKSMGTSNQDEPR--LCTKALPSSSF-
A0A0E0ELM8/111-272          -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACDDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIA--------QSDDRGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPR--LCTKALPSSSF-
A0A0E0IC32/147-305          -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIS--------QSDDKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVACLKPDTKSMGTSNQDEPR--LCTKALPS----
A0A0E0QJ92/143-305          -KTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIA--------QSDDKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPR--LCTKALPSSSFV
A0A1D6KPG4/129-285          KKSVRRPSAEEKELAELVHKVHLLCLIARGRVVDKACYDTLIQASVLSLVPCHLLWSLVDVPNLKAVNLRSLVSWFHRTFCVTA--------QSTDRGSFESNLAFTIQDHVGTAEEICALSVALFRALNLPARFVTNLDVAGLKTDTKVKGTFSQDASR--LCTRA-------
#=GC scorecons              053355335556969659946999997999976666649596996669679466934669554666456659999966694656000000006658466659696557945596999669999979969665597965999956969666466646546600696553332210
#=GC scorecons_70           ___________****__**_*****************_*_*****_*****_***___**___*_*__**_******__*_*__________*__*_***_***___**___*****__***********___****_****_*******_**__*__*___**__________
#=GC scorecons_80           ____________*_*__**__*****_****_______*_*_**___*__*___*____*___________*****___*_______________*_____*_*____*___*_***__********_*____***__****__*_*________________*__________
#=GC scorecons_90           ____________*_*__**__*****_****_______*_*_**___*__*___*____*___________*****___*_______________*_____*_*____*___*_***__*****_**_*____*_*__****__*_*________________*__________
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