# STOCKHOLM 1.0
#=GF ID 3.90.260.10/FF/000011
#=GF DE DNA repair protein RAD4
#=GF AC 3.90.260.10/FF/000011
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 39.708
#=GS 4yirA01/32-338      AC P14736
#=GS 4yirA01/32-338      OS Saccharomyces cerevisiae S288C
#=GS 4yirA01/32-338      DE DNA repair protein RAD4
#=GS 4yirA01/32-338      DR CATH; 4yir; A:126-432; 
#=GS 4yirA01/32-338      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4yirA01/32-338      DR GO; GO:0000111; GO:0000122; GO:0003684; GO:0005515; GO:0005634; GO:0005829; GO:0006265; GO:0006289; GO:0043161; GO:1990165; 
#=GS 2qshA01/29-338      AC P14736
#=GS 2qshA01/29-338      OS Saccharomyces cerevisiae S288C
#=GS 2qshA01/29-338      DE DNA repair protein RAD4
#=GS 2qshA01/29-338      DR CATH; 2qsh; A:123-432; 
#=GS 2qshA01/29-338      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2qshA01/29-338      DR GO; GO:0000111; GO:0000122; GO:0003684; GO:0005515; GO:0005634; GO:0005829; GO:0006265; GO:0006289; GO:0043161; GO:1990165; 
#=GS 2qsgA01/24-333      AC P14736
#=GS 2qsgA01/24-333      OS Saccharomyces cerevisiae S288C
#=GS 2qsgA01/24-333      DE DNA repair protein RAD4
#=GS 2qsgA01/24-333      DR CATH; 2qsg; A:123-432; 
#=GS 2qsgA01/24-333      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2qsgA01/24-333      DR GO; GO:0000111; GO:0000122; GO:0003684; GO:0005515; GO:0005634; GO:0005829; GO:0006265; GO:0006289; GO:0043161; GO:1990165; 
#=GS 2qsfA01/27-333      AC P14736
#=GS 2qsfA01/27-333      OS Saccharomyces cerevisiae S288C
#=GS 2qsfA01/27-333      DE DNA repair protein RAD4
#=GS 2qsfA01/27-333      DR CATH; 2qsf; A:126-432; 
#=GS 2qsfA01/27-333      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2qsfA01/27-333      DR GO; GO:0000111; GO:0000122; GO:0003684; GO:0005515; GO:0005634; GO:0005829; GO:0006265; GO:0006289; GO:0043161; GO:1990165; 
#=GS P14736/126-432      AC P14736
#=GS P14736/126-432      OS Saccharomyces cerevisiae S288C
#=GS P14736/126-432      DE DNA repair protein RAD4
#=GS P14736/126-432      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P14736/126-432      DR GO; GO:0000111; GO:0000122; GO:0003684; GO:0005515; GO:0005634; GO:0005829; GO:0006265; GO:0006289; GO:0043161; GO:1990165; 
#=GS Q74ZN6/140-448      AC Q74ZN6
#=GS Q74ZN6/140-448      OS Eremothecium gossypii ATCC 10895
#=GS Q74ZN6/140-448      DE AGR162Cp
#=GS Q74ZN6/140-448      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS R9XIF9/92-400       AC R9XIF9
#=GS R9XIF9/92-400       OS Saccharomycetaceae sp. 'Ashbya aceri'
#=GS R9XIF9/92-400       DE AaceriAGR162Cp
#=GS R9XIF9/92-400       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; 
#=GS H0GFG6/126-432      AC H0GFG6
#=GS H0GFG6/126-432      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GFG6/126-432      DE Rad4p
#=GS H0GFG6/126-432      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8VRF8/126-432  AC A0A0L8VRF8
#=GS A0A0L8VRF8/126-432  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VRF8/126-432  DE RAD4p Protein that recognizes and binds damaged DNA (With Rad23p) during NER
#=GS A0A0L8VRF8/126-432  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS N1P562/126-432      AC N1P562
#=GS N1P562/126-432      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P562/126-432      DE Rad4p
#=GS N1P562/126-432      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZRB8/126-432      AC A6ZRB8
#=GS A6ZRB8/126-432      OS Saccharomyces cerevisiae YJM789
#=GS A6ZRB8/126-432      DE Radiation sensitive protein
#=GS A6ZRB8/126-432      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WD48/126-432      AC G2WD48
#=GS G2WD48/126-432      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WD48/126-432      DE K7_Rad4p
#=GS G2WD48/126-432      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B5VHT9/126-432      AC B5VHT9
#=GS B5VHT9/126-432      OS Saccharomyces cerevisiae AWRI1631
#=GS B5VHT9/126-432      DE YER162Cp-like protein
#=GS B5VHT9/126-432      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GS48/126-432      AC C7GS48
#=GS C7GS48/126-432      OS Saccharomyces cerevisiae JAY291
#=GS C7GS48/126-432      DE Rad4p
#=GS C7GS48/126-432      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 14
4yirA01/32-338              ---RTSRNCSSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNEGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFRRDESE
2qshA01/29-338              DARRTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNEGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
2qsgA01/24-333              DARRTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNEGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
2qsfA01/27-333              ---RTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNEGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
P14736/126-432              ---RTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNVGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
Q74ZN6/140-448              ----ARAKVVDSETRAFRRSFHMLHVAALLAHYHVRNTWLNDGRLQSRLAALVPDEVYASMHPERDEQLPLRSTRKLLDALRKCMKLWEKHCKRIIGRDG-GLYMRPWAQLGQRYSSGAA--LLTRKAFNRALQKGAPMPRSVAQEGFVALLRGCGLNARLVASLQPPDLTDMKPAGDARGSDPPGDSEDDTDKYEFPLVWCEVWDRYSKAWITVDPLCKQLVEQVRNKSKLEPTG-KFARFNQMRYVVGFDRKMGCRDITRRYCAQYNAKVRRRRITRDTHGAAWYDALLRALHQRKRMKTDDYEDEYFARRDEVE
R9XIF9/92-400               ----ARAKVVDSETRAFRRSFHMLHLAALLAHYHVRNTWLNDGKLQSRLAALVPDEVYASMHPERDEQLPLRSTRKLLDALRKCMKLWEKHCKRIVGLDG-GLYMRPWERLAQRCTSGAG--GMTRKAFNRALQKGAAMPRSVAQEGFVALLRGCGLNARLVVSLQPPDLTNMKPAAEARGADPPGDSDDDTDKYEFPLVWCEVWDRYSKAWITVDPLCKQLVEQVRNKSKLEPTG-KFARFNQMRYVVGFDRKQGCRDITRRYCAQYNAKVRRRRITRDAQGAAWYDALLGALHQRKRMKTDDYEDEYFARRDEVE
H0GFG6/126-432              ---RTSRNVCSNEERKRRKYFHILYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNVGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
A0A0L8VRF8/126-432          ---RTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNVGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
N1P562/126-432              ---RTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNVGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
A6ZRB8/126-432              ---RTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNVGLYMRTWKEIEMSVNNKRNFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
G2WD48/126-432              ---RTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNVGLYMRTWKEIEMSANNKRNFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMIKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
B5VHT9/126-432              ---RTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNVGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE
C7GS48/126-432              ---RTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNVGLYMRTWKEIEMSANNKRNFKTLKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY------KDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITAFHHRKRTKIDDYEDQYFFQRDESE
#=GC scorecons              00026555845595954965998966559659456995969557955695599965975469966996999999999995969995996995945453951999995945644535555322475955949965994449156546999969959569999649499996969945545594654111011594457965999999679959999996546569999459995959255554946999657999399996999955449599969999694495597556649896999595999996994699959
#=GC scorecons_70           ________*___*_*__**_******__**_*__***_*_*__**__**__****_**__***_***_***********_*****_**_**_*_____*__*****_*_______________*_*__*_**__**___*__*___*******_*__*****_*_****_****______*___________*___**__**********_******_____*****__***_*_*______*_*****_****_*********____*_**********__*__**_____*******_*_*****_**__***_*
#=GC scorecons_80           ________*___*_*__*__****____*__*___**_*_*__**___*__***__**___**__**_***********_*_***_**_**_*_____*__*****_*_______________*_*__*_**__**___*______****_**_*__****__*_****_*_**______*___________*___**__******_***_******______****__***_*_*______*__***__****_****_****____*_***_****_*__*__**_____***_***_*_*****_**__***_*
#=GC scorecons_90           ________*___*_*__*__****____*__*___**_*_*___*___*__***__*____**__**_***********_*_***_**_**_*_____*__*****_*_________________*__*_**__**___*______****_**_*__****__*_****_*_**______*___________*____*__******__**_******______****__***_*_*______*__***___***_****_****____*_***_****_*__*__*______***_***_*_*****_**__***_*
//