# STOCKHOLM 1.0
#=GF ID 3.90.226.10/FF/000089
#=GF DE Membrane-bound serine protease
#=GF AC 3.90.226.10/FF/000089
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 92.982
#=GS Q8TS89/27-240      AC Q8TS89
#=GS Q8TS89/27-240      OS Methanosarcina acetivorans C2A
#=GS Q8TS89/27-240      DE Nodulation protein NfeD
#=GS Q8TS89/27-240      DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; 
#=GS Q5JG17/22-245      AC Q5JG17
#=GS Q5JG17/22-245      OS Thermococcus kodakarensis KOD1
#=GS Q5JG17/22-245      DE Predicted membrane-bound serine protease, NfeD homolog
#=GS Q5JG17/22-245      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; 
#=GS O67682/14-236      AC O67682
#=GS O67682/14-236      OS Aquifex aeolicus VF5
#=GS O67682/14-236      DE Nodulation competitiveness protein NfeD
#=GS O67682/14-236      DR ORG; Bacteria; Aquificae; Aquificae; Aquificales; Aquificaceae; Aquifex; Aquifex aeolicus; 
#=GS Q74AE5/36-253      AC Q74AE5
#=GS Q74AE5/36-253      OS Geobacter sulfurreducens PCA
#=GS Q74AE5/36-253      DE Membrane-bound serine protease NfeD, long form
#=GS Q74AE5/36-253      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; 
#=GS B5YJM0/28-248      AC B5YJM0
#=GS B5YJM0/28-248      OS Thermodesulfovibrio yellowstonii DSM 11347
#=GS B5YJM0/28-248      DE Membrane-bound serine protease
#=GS B5YJM0/28-248      DR ORG; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio; Thermodesulfovibrio yellowstonii; 
#=GS Q89KF5/29-273      AC Q89KF5
#=GS Q89KF5/29-273      OS Bradyrhizobium diazoefficiens USDA 110
#=GS Q89KF5/29-273      DE Bll4952 protein
#=GS Q89KF5/29-273      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS Q83BM1/31-271      AC Q83BM1
#=GS Q83BM1/31-271      OS Coxiella burnetii RSA 493
#=GS Q83BM1/31-271      DE Non-proteolytic membrane spanning protein, peptidase family S49
#=GS Q83BM1/31-271      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella; Coxiella burnetii; 
#=GS B1L3Q6/20-231      AC B1L3Q6
#=GS B1L3Q6/20-231      OS Candidatus Korarchaeum cryptofilum OPF8
#=GS B1L3Q6/20-231      DE Short-chain alcohol dehydrogenase
#=GS B1L3Q6/20-231      DR ORG; Archaea; Candidatus Korarchaeota; Candidatus Korarchaeum; Candidatus Korarchaeum cryptofilum; 
#=GS Q8ZYJ1/18-228      AC Q8ZYJ1
#=GS Q8ZYJ1/18-228      OS Pyrobaculum aerophilum str. IM2
#=GS Q8ZYJ1/18-228      DE Conserved protein (NfeD homolog)
#=GS Q8ZYJ1/18-228      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; 
#=GS Q9I667/20-247      AC Q9I667
#=GS Q9I667/20-247      OS Pseudomonas aeruginosa PAO1
#=GS Q9I667/20-247      DE Uncharacterized protein
#=GS Q9I667/20-247      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A0U9HVG6/19-238  AC A0A0U9HVG6
#=GS A0A0U9HVG6/19-238  OS Thermodesulfovibrio aggregans
#=GS A0A0U9HVG6/19-238  DE Membrane-bound serine protease
#=GS A0A0U9HVG6/19-238  DR ORG; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio; Thermodesulfovibrio aggregans; 
#=GS A0A1V5EPD1/27-272  AC A0A1V5EPD1
#=GS A0A1V5EPD1/27-272  OS Bradyrhizobium sacchari
#=GS A0A1V5EPD1/27-272  DE Serine protease
#=GS A0A1V5EPD1/27-272  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium sacchari; 
#=GS A0A1C7BN89/20-247  AC A0A1C7BN89
#=GS A0A1C7BN89/20-247  OS Pseudomonas aeruginosa BL04
#=GS A0A1C7BN89/20-247  DE Membrane-bound protease
#=GS A0A1C7BN89/20-247  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A3E1N3W2/20-247  AC A0A3E1N3W2
#=GS A0A3E1N3W2/20-247  OS Pseudomonas aeruginosa
#=GS A0A3E1N3W2/20-247  DE Nodulation protein NfeD
#=GS A0A3E1N3W2/20-247  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A2A6MXG8/29-273  AC A0A2A6MXG8
#=GS A0A2A6MXG8/29-273  OS Bradyrhizobium diazoefficiens
#=GS A0A2A6MXG8/29-273  DE Serine protease
#=GS A0A2A6MXG8/29-273  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS A0A0E4FZ88/29-273  AC A0A0E4FZ88
#=GS A0A0E4FZ88/29-273  OS Bradyrhizobium diazoefficiens
#=GS A0A0E4FZ88/29-273  DE Nodulation efficiency protein D
#=GS A0A0E4FZ88/29-273  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GF SQ 16
Q8TS89/27-240              AGAAAEDKVLVLEISGAITPASDNLIADAIQSAESGNYEALVITLDTPGGGLEETQIIIKAIENTTMPVIGYV-PESGKAWSAGTLILMGTDIAAMAPFTVIGSAQPVQVSAEGT--------------------------------VPVEDEKTINALVKFSTETARKHGRNETFAEEVITENRNLNAEEALEEGVIEYIAISVPNLLNQVDGEIVKGK-------ELHTANATTETYKPPLPLSFLTLISNP----
Q5JG17/22-245              SVSAEKRVVYVGTIEGTITQYTVDQFESYIRTAEKNSAEALIIELNTPGGQGDAMMEIVSLIQNSTVPVIIYVYPRGAIAASAGTYIAMASHLIAMAPGTSIGACEPIL----GYS---------------------------ANGSIVRAPDKIRNFYAAYMRSLAEASGRNETAAVKFVLEDLSLTPEEALKANVIEVIANDLPDLLKKANGMRTKVPVAGKGYVTFNFTNVEVKRLSPSLSYQIVTFLANPG---
O67682/14-236              ----SFGKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILLLNTPGGLVESMRKIIQSFETAPFPIVVYVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHPVL----ATP-----------QGREKK----------EKG-KDVMMEKVLQDMLAFVRAIAKEKGRNVKVVEKMVKESLSLSAEEALKKGVIDLIAYNLEDLLTKLEGKKVKKL---NAVYEIRTKGKEVVFLKPSLREEFLKIITNPTV--
Q74AE5/36-253              ---STGGDVRVVGLRGAVNPVTASFLKRNLDDAARKGDRLVLVEMDTPGGLDTAMREIVKDILASPVPVAVYVAPAGARAASAGAIITLAADIAAMAPGTNIGAAHPVAI---G-----------------------------EKQ-DKVMEQKVLNDAEAYVDGIASRRGRNAEVARRMVRESLSLPAEKALEEKMIDLIAADRSALFAQLEGRPVSRP---GGDTVLRLAGAPVREAEMTTRERILDAIGNPNVA-
B5YJM0/28-248              -TSVYAKEIIVLTVNGVINPPHAEYTIKGIQKAHEQNAEAVIIQLDTPGGLDTSMRSIIKEMLNSQIPIVVYVSPKGARAASAGAFITLAAHIAAMAPGTNIGAAHPVAMG--G-----------------------------EKM-DKTMAEKITNDAVAYIKSIAKQRGRNIEWAEQAVRKSISSTETEALKLKVIDLIADDLNSLMKDINGMKVKTA---RGEVTLNTKTAKINKIEMNFREKLLNFISDPNIA-
Q89KF5/29-273              ----NGRLALIVSIDGAIGPASASYVKEALAHASERRAEVVLLRINTPGGLNSSMREIVADVLASPVPVVGYVAPSGAHAASAGTYILYATHIAAMASGTNIGAATPVQI---GGPLPGLPSGTPDKGGKDKKDGDQQSEK--DQP-KDAMTAKVTNDAVAFIRSLAELRNRNVDWAEKAVREAATLSANGALEAHAIDLVARDQAELLRQLDGRVVEVA--GGKTQRLATKDAVVEAIDPGWISRFLAVITDPNVA-
Q83BM1/31-271              -QNNTRRLAILIDIKGGIGPATADFFHRSLKQATEKKAQVIILQLDTPGGLVTAMRDIIKDILASPIPVIGYVAPSGAHAASAGTYILYATHIAAMAPGTNLGAATPIAI---GTP-----GGSSPEKGNEKKEG---AKKAPAQ--KTAAEKKAISDARAYIRSLAQLRGRNVEWAESAVDEAESLSAEEAYKIKVINIIASNIPNLLEQANGMKISVR---GETQTVNTANLEIEKVEPDWRTRFLSVITDSSVAY
B1L3Q6/20-231              ---GAGGRVLVTNITGYISPATVEQVKLAVKTAE-NGYSALVLQINTFGGQSDATFSIIDLILASKVPVIGYVYPEGGQALSAGTYILMATDYAAMSPYSTIGSAQPVV----GY--------------------------------TPLNESKYLNAYATKMRSYAAMHGRNQSAAELMVLSNKNFMADEALKVGLIDSVEQSLDSLLENADGKVVRRG---AQEFKLEVYPATIEYLETTPRVEIMKYLSDPV---
Q8ZYJ1/18-228              ----VVSSVYVVEINNVIGPYTLSQVQRAISLAEQNNG-AVLLLLSTPGGLADVTLQIMREIGNSPVPVIGYVYPDYSYAWSAGTYILMSTHIAAMAPHTVIGSCQPIA----GG--------------------------------TPINESKTLNALIGYLETVSKSYGRNGTFARLCITQNLNLGAEEALRQRVIDVIAIDINDLLKKINGTLVLLR---NQKTQLIITSTILKRAEPTITETLQMWLSDPV---
Q9I667/20-247              -CLAASGPVRVLSVDGAIGPASADYLVRGIERAAEDGAQLVVLELDTPGGLDASMRRIVKAILASQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATPVRL---GTP-------------------DKPAEKPPARD-ADPMARKQVNDAAAYIRGLAQLRGRNAEWAERAVREAVSLAAHEAAAQKVIDLQARDLPDLLRQLDSRSLRVG---ERALTLATAGATVERQAPDWRARLLAVLTDPS---
A0A0U9HVG6/19-238          -SSAHAKEIIVLTVNGVINPPHAEYTIKGIKKAHETKAEAVIIQLDTPGGLDTSMRSIVKEMLNSQIPIIVYVSPKGARAASAGAFITLAAHIAAMAPGTNIGAAHPVAI---G-----------------------------EKM-DKTMAEKVTNDAVAYIKSIAKQRGRNIEWAEQAVRKSISSTETEALKLKVIDLIADDLDSLIKEINGMKVKTI---YGEVTLNTKTAKINKIEMNFRERLLNFISDPNIA-
A0A1V5EPD1/27-272          --EESGRVALIVSIDGAIGPASASYVKEALVKASERRAEVVLLRMNTPGGLNSSMREIIADVLASPIPVVGYVAPSGAHAASAGTYILYATHIAAMAPGTNIGAATPVQI---GGP-PGLPGGTPDKGGKDKKDGDQQSEK--DQL-KDPMTAKATNDAVAFIRSLAELRGRNVDWAEKAVREAATLSANGALEAHAIDLVARDQSELLRQLDGRVVEVA--GGKTQRLATKDAVVEAIDPGRISRFLAIITDPNVA-
A0A1C7BN89/20-247          -CLAASGPVRVLSVDGAIGPASADYLVRGIERAAEDGAQLVVLELDTPGGLDASMRRIVKAILASQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATPVRL---GTP-------------------DKPAEKPPARD-AEPMARKQVNDAAAYIRGLAQLRGRNAEWAERAVREAVSLAAHEAAAQKVIDLQARDLPDLLRQLDGRSLRVG---ERALTLATAGATVERQAPDWRARLLAVLTDPS---
A0A3E1N3W2/20-247          -CLAASGPVRVLSVDGAIGPASADYLVRGIERAAEDGAQLVVLELDTPGGLDASMRRIVKAILASQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATPVRL---GTP-------------------DKPAEKPPARD-AEPMARKQVNDAAAYIRGLAQLRGRNAEWAERAVREAVSLAAHEAAAQKVIDLQARDLPDLLRQLDGRSLRVG---ERALTLATAGATVERQAPDWRARLLAVLTDPS---
A0A2A6MXG8/29-273          ----NGRLALIVSIDGAIGPASASYVKEALAHASERRAEVVLLRINTPGGLNSSMREIVADVLASPVPVVGYVAPSGAHAASAGTYILYATHIAAMASGTNIGAATPVQI---GGPLPGLPSGTPDKGGKDKKDGDQQSEK--DQP-KDAMTAKVTNDAVAFIRSLAELRNRNVDWAEKAVREAATLSANGALEAHAIDLVARDQAELLRQLDGRVVEVA--GGKTQRLATKDAVVEAIDPGWISRFLAVITDPNVA-
A0A0E4FZ88/29-273          ----NGRLALIVSIDGAIGPASASYVKEALAHASERRAEVVLLRINTPGGLNSSMREIIADVLASPVPVVGYVAPSGAHAASAGTYILYATHIAAMAPGTNIGAATPVQI---GGPLPGLPSGTPDKGGKDKKDGDQQGEK--DQP-KDAMTAKVTNDAVAFIRSLAELRNRNVDWAEKAVREAATLSANGALEAHAIDLVARDQAELLRQLDGRVVEVA--GGKTQRLATKDAVVEAIDPGWISRFLAVITDPNVA-
#=GC scorecons             000233425374464848584554543446339343454565636597996345653964365574697558939476495999759547567899875857967497320008220000000000000000000100011002310333433934754466555584357993448644846435646469643459755836434974556843644300033224735446365334633435563465683210
#=GC scorecons_70          __________*____*_*_*_________*__*_________*_*_****____*__**_____*_***__**_*_**_*_****_*__*_*******_*_****_**_____*_______________________________________*__*___**____*___***___**__*_*___*_*_***____**__*_*___**____*__*___________*__________________*__*_**____
#=GC scorecons_80          _______________*_*_*____________*_____________****_______*______*__**__**_*____*_***__*__*__******_*_**_*_**_____*_______________________________________*__*_________*___***___*___*__________*_____**__*_____**____*_______________________________________*____
#=GC scorecons_90          _______________*_*_*____________*_____________*_**_______*_________*___**_*____*_***__*______****__*__*___*______*_______________________________________*____________*____**___*______________*_____*_________*_____*_______________________________________*____
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