# STOCKHOLM 1.0 #=GF ID 3.90.1600.10/FF/000030 #=GF DE DNA polymerase II #=GF AC 3.90.1600.10/FF/000030 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 56.218 #=GS 3maqA04/351-434_515-641 AC P21189 #=GS 3maqA04/351-434_515-641 OS Escherichia coli K-12 #=GS 3maqA04/351-434_515-641 DE DNA polymerase II #=GS 3maqA04/351-434_515-641 DR CATH; 3maq; A:348-431; A:512-638; #=GS 3maqA04/351-434_515-641 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS Q8EFZ4/537-661 AC Q8EFZ4 #=GS Q8EFZ4/537-661 OS Shewanella oneidensis MR-1 #=GS Q8EFZ4/537-661 DE DNA polymerase #=GS Q8EFZ4/537-661 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis; #=GS Q8EFZ4/537-661 DR GO; GO:0003887; GO:0006260; #=GS 3k5oB04/351-434_515-635 AC P21189 #=GS 3k5oB04/351-434_515-635 OS Escherichia coli K-12 #=GS 3k5oB04/351-434_515-635 DE DNA polymerase II #=GS 3k5oB04/351-434_515-635 DR CATH; 3k5o; B:348-431; B:512-632; #=GS 3k5oB04/351-434_515-635 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 3k5oA04/351-434_515-638 AC P21189 #=GS 3k5oA04/351-434_515-638 OS Escherichia coli K-12 #=GS 3k5oA04/351-434_515-638 DE DNA polymerase II #=GS 3k5oA04/351-434_515-638 DR CATH; 3k5o; A:348-431; A:512-635; #=GS 3k5oA04/351-434_515-638 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 3k5nB04/351-434_515-641 AC P21189 #=GS 3k5nB04/351-434_515-641 OS Escherichia coli K-12 #=GS 3k5nB04/351-434_515-641 DE DNA polymerase II #=GS 3k5nB04/351-434_515-641 DR CATH; 3k5n; B:348-431; B:512-638; #=GS 3k5nB04/351-434_515-641 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 3k5nA04/351-434_515-641 AC P21189 #=GS 3k5nA04/351-434_515-641 OS Escherichia coli K-12 #=GS 3k5nA04/351-434_515-641 DE DNA polymerase II #=GS 3k5nA04/351-434_515-641 DR CATH; 3k5n; A:348-431; A:512-638; #=GS 3k5nA04/351-434_515-641 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 3k5mA04/351-434_515-641 AC P21189 #=GS 3k5mA04/351-434_515-641 OS Escherichia coli K-12 #=GS 3k5mA04/351-434_515-641 DE DNA polymerase II #=GS 3k5mA04/351-434_515-641 DR CATH; 3k5m; A:348-431; A:512-638; #=GS 3k5mA04/351-434_515-641 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 3k5lA04/351-434_515-641 AC P21189 #=GS 3k5lA04/351-434_515-641 OS Escherichia coli K-12 #=GS 3k5lA04/351-434_515-641 DE DNA polymerase II #=GS 3k5lA04/351-434_515-641 DR CATH; 3k5l; A:348-431; A:512-638; #=GS 3k5lA04/351-434_515-641 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 3k59A04/351-434_515-641 AC P21189 #=GS 3k59A04/351-434_515-641 OS Escherichia coli K-12 #=GS 3k59A04/351-434_515-641 DE DNA polymerase II #=GS 3k59A04/351-434_515-641 DR CATH; 3k59; A:348-431; A:512-638; #=GS 3k59A04/351-434_515-641 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 3k58A04/351-434_515-641 AC P21189 #=GS 3k58A04/351-434_515-641 OS Escherichia coli K-12 #=GS 3k58A04/351-434_515-641 DE DNA polymerase II #=GS 3k58A04/351-434_515-641 DR CATH; 3k58; A:348-431; A:512-638; #=GS 3k58A04/351-434_515-641 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 3k57A04/351-434_515-641 AC P21189 #=GS 3k57A04/351-434_515-641 OS Escherichia coli K-12 #=GS 3k57A04/351-434_515-641 DE DNA polymerase II #=GS 3k57A04/351-434_515-641 DR CATH; 3k57; A:348-431; A:512-638; #=GS 3k57A04/351-434_515-641 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS 1q8iA04/348-431_512-636 AC P21189 #=GS 1q8iA04/348-431_512-636 OS Escherichia coli K-12 #=GS 1q8iA04/348-431_512-636 DE DNA polymerase II #=GS 1q8iA04/348-431_512-636 DR CATH; 1q8i; A:348-431; A:512-636; #=GS 1q8iA04/348-431_512-636 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS Q9KSP4/515-639 AC Q9KSP4 #=GS Q9KSP4/515-639 OS Vibrio cholerae O1 biovar El Tor str. N16961 #=GS Q9KSP4/515-639 DE DNA polymerase #=GS Q9KSP4/515-639 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS Q9KSP4/515-639 DR GO; GO:0003887; GO:0006260; #=GS A2E9P0/622-717 AC A2E9P0 #=GS A2E9P0/622-717 OS Trichomonas vaginalis #=GS A2E9P0/622-717 DE DNA polymerase #=GS A2E9P0/622-717 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS A0A0H3PXT3/515-639 AC A0A0H3PXT3 #=GS A0A0H3PXT3/515-639 OS Vibrio cholerae B33 #=GS A0A0H3PXT3/515-639 DE DNA polymerase #=GS A0A0H3PXT3/515-639 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0H5UVD9/515-639 AC A0A0H5UVD9 #=GS A0A0H5UVD9/515-639 OS Vibrio cholerae #=GS A0A0H5UVD9/515-639 DE DNA polymerase #=GS A0A0H5UVD9/515-639 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0X1KW14/515-639 AC A0A0X1KW14 #=GS A0A0X1KW14/515-639 OS Vibrio cholerae MO10 #=GS A0A0X1KW14/515-639 DE DNA polymerase #=GS A0A0X1KW14/515-639 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0K9UTB0/515-639 AC A0A0K9UTB0 #=GS A0A0K9UTB0/515-639 OS Vibrio cholerae 2740-80 #=GS A0A0K9UTB0/515-639 DE DNA polymerase #=GS A0A0K9UTB0/515-639 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS C3LLQ8/515-639 AC C3LLQ8 #=GS C3LLQ8/515-639 OS Vibrio cholerae M66-2 #=GS C3LLQ8/515-639 DE DNA polymerase #=GS C3LLQ8/515-639 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GF SQ 19 3maqA04/351-434_515-641 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLETVR Q8EFZ4/537-661 -------------------------------------------------H----------------------------------DAKLASSITMRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVHLGYEPDLSDISALGKQIAAQINANWQAKITKDFELESFLELQFERHYEQFFMPTLRGSEEGSKKRYVGAWRNVSGELEITFKG----- 3k5oB04/351-434_515-635 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFK------ 3k5oA04/351-434_515-638 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLE--- 3k5nB04/351-434_515-641 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLETVR 3k5nA04/351-434_515-641 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLETVR 3k5mA04/351-434_515-641 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLETVR 3k5lA04/351-434_515-641 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLETVR 3k59A04/351-434_515-641 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLETVR 3k58A04/351-434_515-641 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLETVR 3k57A04/351-434_515-641 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLETVR 1q8iA04/348-431_512-636 IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIVRTFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETL-QKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKGLET-- Q9KSP4/515-639 ------------------------------------------------------------------------------------DARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNE-QLIFKGLE--- A2E9P0/622-717 ---------------------------------------------------------------------------------------------RQGRVYHYMAMQFLQTKNYNVIYGDTDSLFVNFGSD-DYSTVYQKSLQICEEMNEKI---------FENPVKIRLEKIYKNFII--------FSKKHYAGIRMDLQPN-EIDIKG----- A0A0H3PXT3/515-639 ------------------------------------------------------------------------------------DARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNE-QLIFKGLE--- A0A0H5UVD9/515-639 ------------------------------------------------------------------------------------DARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNE-QLIFKGLE--- A0A0X1KW14/515-639 ------------------------------------------------------------------------------------DARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNE-QLIFKGLE--- A0A0K9UTB0/515-639 ------------------------------------------------------------------------------------DARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNE-QLIFKGLE--- C3LLQ8/515-639 ------------------------------------------------------------------------------------DARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNE-QLIFKGLE--- #=GC scorecons 111111111111111111111111111111111111111111111111121111111111111111111111111111111111746777777779757747765677757959999999979937564464577456756765569567463616433767477777967747978776774567999798973466645056579855100 #=GC scorecons_70 ____________________________________________________________________________________*_***********_**_***_****_**_***********_*_*__*__**__**_***__**__*___*_*___***_*********_*********___*********__*_*______***_____ #=GC scorecons_80 _____________________________________________________________________________________________****_**_**___**__**_***********_*____________*__*____*__*_________*_*_***_**_**__***_________*******____________***_____ #=GC scorecons_90 _______________________________________________________________________________________________*_______________*_********_**______________________*_____________________*_____*_*_________***_***_____________**_____ //