# STOCKHOLM 1.0
#=GF ID 3.90.1100.10/FF/000025
#=GF DE DNA-directed RNA polymerase subunit beta
#=GF AC 3.90.1100.10/FF/000025
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 22.436
#=GS Q27493/336-586      AC Q27493
#=GS Q27493/336-586      OS Caenorhabditis elegans
#=GS Q27493/336-586      DE DNA-directed RNA polymerase subunit beta
#=GS Q27493/336-586      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q27493/336-586      DR GO; GO:0005730; 
#=GS A0A1I7U603/336-584  AC A0A1I7U603
#=GS A0A1I7U603/336-584  OS Caenorhabditis tropicalis
#=GS A0A1I7U603/336-584  DE DNA-directed RNA polymerase subunit beta
#=GS A0A1I7U603/336-584  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A2G5VN78/336-576  AC A0A2G5VN78
#=GS A0A2G5VN78/336-576  OS Caenorhabditis nigoni
#=GS A0A2G5VN78/336-576  DE DNA-directed RNA polymerase subunit beta
#=GS A0A2G5VN78/336-576  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS G0MLX0/336-585      AC G0MLX0
#=GS G0MLX0/336-585      OS Caenorhabditis brenneri
#=GS G0MLX0/336-585      DE DNA-directed RNA polymerase subunit beta
#=GS G0MLX0/336-585      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2H2IAD5/336-584  AC A0A2H2IAD5
#=GS A0A2H2IAD5/336-584  OS Caenorhabditis japonica
#=GS A0A2H2IAD5/336-584  DE DNA-directed RNA polymerase subunit beta
#=GS A0A2H2IAD5/336-584  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS E3MFI3/336-585      AC E3MFI3
#=GS E3MFI3/336-585      OS Caenorhabditis remanei
#=GS E3MFI3/336-585      DE DNA-directed RNA polymerase subunit beta
#=GS E3MFI3/336-585      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A261CBM7/336-585  AC A0A261CBM7
#=GS A0A261CBM7/336-585  OS Caenorhabditis latens
#=GS A0A261CBM7/336-585  DE DNA-directed RNA polymerase subunit beta
#=GS A0A261CBM7/336-585  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A8XVM2/336-577      AC A8XVM2
#=GS A8XVM2/336-577      OS Caenorhabditis briggsae
#=GS A8XVM2/336-577      DE DNA-directed RNA polymerase subunit beta
#=GS A8XVM2/336-577      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5VND2/336-576  AC A0A2G5VND2
#=GS A0A2G5VND2/336-576  OS Caenorhabditis nigoni
#=GS A0A2G5VND2/336-576  DE DNA-directed RNA polymerase subunit beta
#=GS A0A2G5VND2/336-576  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS G0PGG1/260-508      AC G0PGG1
#=GS G0PGG1/260-508      OS Caenorhabditis brenneri
#=GS G0PGG1/260-508      DE DNA-directed RNA polymerase subunit beta
#=GS G0PGG1/260-508      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2G5VMT8/336-576  AC A0A2G5VMT8
#=GS A0A2G5VMT8/336-576  OS Caenorhabditis nigoni
#=GS A0A2G5VMT8/336-576  DE Uncharacterized protein
#=GS A0A2G5VMT8/336-576  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 11
Q27493/336-586              ETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQY
A0A1I7U603/336-584          ETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEFMSSRGEFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTAACRIVTHLEDNSNVASMLAELGMYSQKTVSLAPPEEELYPVLMDGRFIGYIPIAKAASIERYLRCAKVSKDARIPYTSEIALVRRSTDIKNIQT--
A0A2G5VN78/336-576          ETPDNPQFQEASVSGHILLLILRERMENILGMVRRKIEYMSAKQDFRLTSAQILRALGNHNSGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCEIVTHLTDNSNVTSMLAELGMYTQKTVSMAPSGEELYPVLMDGRFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRS----------
G0MLX0/336-585              ETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEFMSAKSDFILTSAAIIKALGNHNGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTHLTDNSNVPAMLSELGMYTQKTVTLAPPGEELYPVLMDGRFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQTQ-
A0A2H2IAD5/336-584          ETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEFMSARKDFILTSAAILKALGNHNGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTHLSDNSNVPAMLSELGMYTHQTVSLAPPNEQLYPVLMDGRFIGYVPIVKAASIERYLRCAKVANDARIPYTAEIALVRRSTDIKNVQT--
E3MFI3/336-585              ETPDNPQFQEASVSGHILLLILRERMENIIGVVRRKLEFMSSRKDFILTSSAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTHLSDNSSIPSMLAELGMYTQKTVSLAPPGEELYPVLMDGRYIGYVPIAKAASIERYLRCAKVANDARIPYTTEIALVRRSTDIKNIQTQ-
A0A261CBM7/336-585          ETPDNPQFQEASVSGHILLLILRERMENIIGVVRRKLEFMSSRKDFILTSSAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTHLSDNSSIPSMLAELGMYTQKTVSLAPPGEELYPVLMDGRYIGYVPIAKAASIERYLRCAKVANDARIPYTTEIALVRRSTDIKNIQTQ-
A8XVM2/336-577              ETPDNPQFQEASVSGHILLLILRERMENILGMVRRKIEFMSARQDFRLTSAQILKALGNHNGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCEIVTHLTDNSNVTSMLAELGMYTQKTVSMAPSGEELYPVLMDGKFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRST---------
A0A2G5VND2/336-576          ETPDNPQFQEASVSGHILLLILRERMENILGMVRRKIEYMSAKQDFRLTSAQILRALGNHNSGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCEIVTHLTDNSNVTSMLAELGMYTQKTVSMAPSGEELYPVLMDGRFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRS----------
G0PGG1/260-508              ETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEFMSAKNDFILTSAAIIKALGNHNGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTHLTDNSNVPAMLAELGMYTQKTVTLAPPGEELYPVLMDGRFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQT--
A0A2G5VMT8/336-576          ETPDNPQFQEASVSGHILLLILRERMENILGMVRRKIEYMSAKQDFRLTSAQILRALGNHNSGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCEIVTHLTDNSNVTSMLAELGMYTQKTVSMAPSGEELYPVLMDGRFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRS----------
#=GC scorecons              99999999999999999999999999999697999969799674894999759779999966999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999795999795999775689799999778996699669899999989888998997999999999999997699999995999999994333323300
#=GC scorecons_70           *****************************************_*_**_****_********_************************************************************************************************_*****_*****_******************_*******************************************_********__________
#=GC scorecons_80           *****************************_******_****___**_****_********__***********************************************************************************************_*****_*****__*************__**__******************_***************_*******_********__________
#=GC scorecons_90           *****************************_*_****_*_**___**_***__*__*****__*********************************************************************************************_*_***_*_***____**_*****__***__**__********_**__*****_**************__*******_********__________
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