# STOCKHOLM 1.0
#=GF ID 3.90.1100.10/FF/000021
#=GF DE DNA-directed RNA polymerase subunit beta
#=GF AC 3.90.1100.10/FF/000021
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 64.536
#=GS Q27492/363-558      AC Q27492
#=GS Q27492/363-558      OS Caenorhabditis elegans
#=GS Q27492/363-558      DE DNA-directed RNA polymerase subunit beta
#=GS Q27492/363-558      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS W4ZK83/380-596      AC W4ZK83
#=GS W4ZK83/380-596      OS Strongylocentrotus purpuratus
#=GS W4ZK83/380-596      DE Uncharacterized protein
#=GS W4ZK83/380-596      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS B3S5S8/233-432      AC B3S5S8
#=GS B3S5S8/233-432      OS Trichoplax adhaerens
#=GS B3S5S8/233-432      DE DNA-directed RNA polymerase subunit beta
#=GS B3S5S8/233-432      DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS C4M3E3/345-554      AC C4M3E3
#=GS C4M3E3/345-554      OS Entamoeba histolytica
#=GS C4M3E3/345-554      DE DNA-directed RNA polymerase subunit beta
#=GS C4M3E3/345-554      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS I1HXW7/358-578      AC I1HXW7
#=GS I1HXW7/358-578      OS Brachypodium distachyon
#=GS I1HXW7/358-578      DE DNA-directed RNA polymerase subunit beta
#=GS I1HXW7/358-578      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS F7APP9/303-534      AC F7APP9
#=GS F7APP9/303-534      OS Xenopus tropicalis
#=GS F7APP9/303-534      DE DNA-directed RNA polymerase subunit beta
#=GS F7APP9/303-534      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; 
#=GS K2I0A2/364-572      AC K2I0A2
#=GS K2I0A2/364-572      OS Entamoeba nuttalli P19
#=GS K2I0A2/364-572      DE DNA-directed RNA polymerase subunit beta
#=GS K2I0A2/364-572      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba nuttalli; 
#=GS B0EDI3/364-571      AC B0EDI3
#=GS B0EDI3/364-571      OS Entamoeba dispar SAW760
#=GS B0EDI3/364-571      DE DNA-directed RNA polymerase subunit beta
#=GS B0EDI3/364-571      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba dispar; 
#=GS A0A1D6LJV2/471-648  AC A0A1D6LJV2
#=GS A0A1D6LJV2/471-648  OS Zea mays
#=GS A0A1D6LJV2/471-648  DE DNA-directed RNA polymerase subunit beta
#=GS A0A1D6LJV2/471-648  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS E3LZ13/362-556      AC E3LZ13
#=GS E3LZ13/362-556      OS Caenorhabditis remanei
#=GS E3LZ13/362-556      DE DNA-directed RNA polymerase subunit beta
#=GS E3LZ13/362-556      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A261AUK5/362-563  AC A0A261AUK5
#=GS A0A261AUK5/362-563  OS Caenorhabditis latens
#=GS A0A261AUK5/362-563  DE DNA-directed RNA polymerase subunit beta
#=GS A0A261AUK5/362-563  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS M3TVF4/345-554      AC M3TVF4
#=GS M3TVF4/345-554      OS Entamoeba histolytica HM-1:IMSS-B
#=GS M3TVF4/345-554      DE DNA-directed RNA polymerase subunit beta
#=GS M3TVF4/345-554      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M2REN2/364-573      AC M2REN2
#=GS M2REN2/364-573      OS Entamoeba histolytica KU27
#=GS M2REN2/364-573      DE DNA-directed RNA polymerase subunit beta
#=GS M2REN2/364-573      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M7WCZ0/364-573      AC M7WCZ0
#=GS M7WCZ0/364-573      OS Entamoeba histolytica HM-3:IMSS
#=GS M7WCZ0/364-573      DE DNA-directed RNA polymerase subunit beta
#=GS M7WCZ0/364-573      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS N9V9N8/364-573      AC N9V9N8
#=GS N9V9N8/364-573      OS Entamoeba histolytica HM-1:IMSS-A
#=GS N9V9N8/364-573      DE DNA-directed RNA polymerase subunit beta
#=GS N9V9N8/364-573      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS A0A175JQ21/364-573  AC A0A175JQ21
#=GS A0A175JQ21/364-573  OS Entamoeba histolytica
#=GS A0A175JQ21/364-573  DE DNA-directed RNA polymerase subunit beta
#=GS A0A175JQ21/364-573  DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GF SQ 16
Q27492/363-558              -------------------------------------------------GLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNAL-MKTMAA---------PLDIVK-HMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVL-----------------------
W4ZK83/380-596              -------------------------------IYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQLIALLFEDLFKKFNSELKKYADQNI-PRPRAA---------QFDIVK-YMRQDQITNGLITAISTGNWSVKRFKMERAGVTQVLSRLSYISCLGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLIKNLALMTHITTDMEEAPIVKLAFNLGVEPVHLMSGEELSMKDVYVVFLNDLLKNK--------------------
B3S5S8/233-432              ---------------------------------------NVVLSHI-PSILDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNI-PKQRAGPVNMNLRFLEFDIVK-YMRQDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLSYLSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSDDKIIINLLFNLGVEDINLLSGEEL-------------------------------------
C4M3E3/345-554              --------------------------------------------------LDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSE---------TFDIIK-CISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQC---------
I1HXW7/358-578              ------------------------------------------------DTFDDKDYVGNKRLELSGQLVSLLFEDLFKTMNSFAVDRMNKNS-DMARSS---------PLDFSQLIMQQDLITTGLERAISTGNWDIKRFKMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEKLSLLSGEEIHAPGSFLVMFNGLILGKHRQPQRFAKSMRTFRQSGKI
F7APP9/303-534              KKSKIDEARELLASTILTHVPVKEFHFRTKCIYIAVMVRRVILAQG-ANKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVI-PKQRAA---------QFDVVK-HMRQDQITNGMVNAISSGNWSLKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAANLGVEDVNLLCGEELSY-----------------------------------
K2I0A2/364-572              --------------------------------------------------LDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSE---------TFDIIK-CISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDQAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQ----------
B0EDI3/364-571              --------------------------------------------------LDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSE---------TFDIIK-CISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSDDQAIVTMLFNLGVEDANLISGDEVNALSSYLVFLNGQLLGIHQNPIHFLK-----------
A0A1D6LJV2/471-648          -------------------------------------------------KHGDMDYVGNKRFELSGQLISLLFE-----------------------------------------LIMQDSITFGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLSHVTTDQEEGPLIYLCYSLGVEDLLSLSSEEIHTPGSFLVMFNGLILGKHKDPQRLV-----------I
E3LZ13/362-556              ------------------------------------------------NELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNAL-MKTMAA---------PLDIVK-HMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNG-------------------------
A0A261AUK5/362-563          ------------------------------------------------NELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNAL-MKTMAA---------PLDIVK-HMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKSENTLIFLNGVLIGTAV------------------
M3TVF4/345-554              --------------------------------------------------LDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSE---------TFDIIK-CISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQC---------
M2REN2/364-573              --------------------------------------------------LDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSE---------TFDIIK-CISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQC---------
M7WCZ0/364-573              --------------------------------------------------LDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSE---------TFDIIK-CISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQC---------
N9V9N8/364-573              --------------------------------------------------LDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSE---------TFDIIK-CISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQC---------
A0A175JQ21/364-573          --------------------------------------------------LDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSE---------TFDIIK-CISPHRITQGLIHSLSTGNWVLKRFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQC---------
#=GC scorecons              000000000000000000000000000000000000000000000000015796976999969979695699997577467545433644341253543000000000357556046466399466446587999469985959497799999999766996999657599999979999799599999699799999959996996696667999557456536457699964455555664343335444552323221121121100000000000
#=GC scorecons_70           ___________________________________________________**_*******_******_******_**_**______*______________________*__*__*____**_*___*_*****__***_*_*_*********************_*_**************_***************_*********_*_****__*__*__*__******_______*______________________________________
#=GC scorecons_80           ___________________________________________________**_**_****_****_*__*****_**__*_____________________________*__________**_______*****__***_*_*_***********___**_***__*_******_*******_*****_*********_***_**__*____***___________*_***_______________________________________________
#=GC scorecons_90           ____________________________________________________*_*__****_**_*_*__****_______________________________________________**_______*_***__***_*_*_*__********___**_***____******_****_**_*****_**_******_***_**__*____***_____________***_______________________________________________
//