# STOCKHOLM 1.0 #=GF ID 3.90.1100.10/FF/000020 #=GF DE DNA-directed RNA polymerase subunit beta #=GF AC 3.90.1100.10/FF/000020 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 64.844 #=GS F6HVA5/330-560 AC F6HVA5 #=GS F6HVA5/330-560 OS Vitis vinifera #=GS F6HVA5/330-560 DE Uncharacterized protein #=GS F6HVA5/330-560 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS Q1K5Q5/306-554 AC Q1K5Q5 #=GS Q1K5Q5/306-554 OS Neurospora crassa OR74A #=GS Q1K5Q5/306-554 DE DNA-directed RNA polymerase subunit beta #=GS Q1K5Q5/306-554 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora crassa; #=GS F4NYH1/273-549 AC F4NYH1 #=GS F4NYH1/273-549 OS Batrachochytrium dendrobatidis JAM81 #=GS F4NYH1/273-549 DE DNA-directed RNA polymerase subunit beta #=GS F4NYH1/273-549 DR ORG; Eukaryota; Fungi; Chytridiomycota; Chytridiomycetes; Rhizophydiales; Batrachochytrium; Batrachochytrium dendrobatidis; #=GS A0A0D0YIX2/286-564 AC A0A0D0YIX2 #=GS A0A0D0YIX2/286-564 OS Cryptococcus gattii EJB2 #=GS A0A0D0YIX2/286-564 DE DNA-directed RNA polymerase subunit beta #=GS A0A0D0YIX2/286-564 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; #=GS F7VPM2/301-549 AC F7VPM2 #=GS F7VPM2/301-549 OS Sordaria macrospora k-hell #=GS F7VPM2/301-549 DE DNA-directed RNA polymerase subunit beta #=GS F7VPM2/301-549 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Sordaria; Sordaria macrospora; #=GS Q5KC33/363-641 AC Q5KC33 #=GS Q5KC33/363-641 OS Cryptococcus neoformans var. neoformans JEC21 #=GS Q5KC33/363-641 DE DNA-directed RNA polymerase subunit beta #=GS Q5KC33/363-641 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; #=GS A0A1E3IB15/358-639 AC A0A1E3IB15 #=GS A0A1E3IB15/358-639 OS Cryptococcus depauperatus CBS 7841 #=GS A0A1E3IB15/358-639 DE DNA-directed RNA polymerase subunit beta #=GS A0A1E3IB15/358-639 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus depauperatus; #=GS G4USJ4/306-554 AC G4USJ4 #=GS G4USJ4/306-554 OS Neurospora tetrasperma FGSC 2509 #=GS G4USJ4/306-554 DE DNA-directed RNA polymerase subunit beta #=GS G4USJ4/306-554 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora tetrasperma; #=GS A0A095CAT3/286-566 AC A0A095CAT3 #=GS A0A095CAT3/286-566 OS Cryptococcus gattii VGII R265 #=GS A0A095CAT3/286-566 DE DNA-directed RNA polymerase subunit beta #=GS A0A095CAT3/286-566 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; #=GS A0A0D0TFZ4/286-564 AC A0A0D0TFZ4 #=GS A0A0D0TFZ4/286-564 OS Cryptococcus gattii CA1280 #=GS A0A0D0TFZ4/286-564 DE DNA-directed RNA polymerase subunit beta #=GS A0A0D0TFZ4/286-564 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIII; #=GS A0A0D0YY06/286-564 AC A0A0D0YY06 #=GS A0A0D0YY06/286-564 OS Cryptococcus gattii VGIV IND107 #=GS A0A0D0YY06/286-564 DE DNA-directed RNA polymerase subunit beta #=GS A0A0D0YY06/286-564 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIV; #=GS J9VRY2/363-640 AC J9VRY2 #=GS J9VRY2/363-640 OS Cryptococcus neoformans var. grubii H99 #=GS J9VRY2/363-640 DE DNA-directed RNA polymerase subunit beta #=GS J9VRY2/363-640 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; #=GS F8MQD2/306-554 AC F8MQD2 #=GS F8MQD2/306-554 OS Neurospora tetrasperma FGSC 2508 #=GS F8MQD2/306-554 DE DNA-directed RNA polymerase subunit beta #=GS F8MQD2/306-554 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora tetrasperma; #=GS Q9P6E7/306-554 AC Q9P6E7 #=GS Q9P6E7/306-554 OS Neurospora crassa #=GS Q9P6E7/306-554 DE DNA-directed RNA polymerase subunit beta #=GS Q9P6E7/306-554 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora crassa; #=GS E6RAD8/286-564 AC E6RAD8 #=GS E6RAD8/286-564 OS Cryptococcus gattii WM276 #=GS E6RAD8/286-564 DE DNA-directed RNA polymerase subunit beta #=GS E6RAD8/286-564 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; #=GS A0A0D0V8V5/286-566 AC A0A0D0V8V5 #=GS A0A0D0V8V5/286-566 OS Cryptococcus gattii VGII Ram5 #=GS A0A0D0V8V5/286-566 DE DNA-directed RNA polymerase subunit beta #=GS A0A0D0V8V5/286-566 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; #=GS A0A226BC45/363-640 AC A0A226BC45 #=GS A0A226BC45/363-640 OS Cryptococcus neoformans var. grubii Bt85 #=GS A0A226BC45/363-640 DE DNA-directed RNA polymerase subunit beta #=GS A0A226BC45/363-640 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; #=GS F5HAL3/286-564 AC F5HAL3 #=GS F5HAL3/286-564 OS Cryptococcus neoformans var. neoformans B-3501A #=GS F5HAL3/286-564 DE DNA-directed RNA polymerase subunit beta #=GS F5HAL3/286-564 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; #=GF SQ 18 F6HVA5/330-560 ------------------------------------KEGRGMAILRDTFIANVPVRQ-----NNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQFIVR--DSITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC-DTPEGEACGLVKNLALMTHVTTDEEESPLISLVSLF---LSNVYLMFGNHRAMS----------------------------- Q1K5Q5/306-554 ----------------------NRPKFG--AAPRRNHAEEGLDALANLVIAHVTVEG-----LDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTS-DTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKG---------------------------- F4NYH1/273-549 GASLKISTQRQALEYIGAKVKVTFKTNR--VGIRRDWVEEARDLLATTVLAHVPVEADDAGVLNFRPKAIYIALMIRRVLQAVKEGGIVDDRDFIGNKRLELAGQLMSLLFEDLFKSWISAIKRAVDIQLKRTNRTSQYDAAAAVSQTSRFITDGMFRAISSGNWSVKRFKMERAGVTQVLSRLSYVSALGMLTRISSQFEKTRKVAGPRSLQTSQWGMICLSGDTEQGEACGLIKNLALMTYITTDSNDVSLRKLAFVL--GTEDINLVSGSDLYATSET-------------------------- A0A0D0YIX2/286-564 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLVKMAFML--GVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKKFVRQ----- F7VPM2/301-549 ----------------------NRPKFG--AAPRRNHAEEGLDALANLVIAHVTVEG-----LDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTS-DTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKG---------------------------- Q5KC33/363-641 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMARRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPETPLVKMAFML--GVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKRFVRQ----- A0A1E3IB15/358-639 ---------------IGARVSSNQFKDD--NKQKLTSADVAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMARRVLAAMVDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKTNRATAFDAGALIRQGGDPITAAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLIKLAFML--GVEDISLATGNELYRPGVHLVQVNGMLVGVTKMAKRFVRTFRKLR G4USJ4/306-554 ----------------------NRPKFG--AAPRRNHAEEGLDALANLVIAHVTVEG-----LDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTS-DTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKG---------------------------- A0A095CAT3/286-566 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLVRMAFML--GVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKRFVRQFR--- A0A0D0TFZ4/286-564 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLVKMAFML--GVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKKFVRQ----- A0A0D0YY06/286-564 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLVKMAFML--GVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKKFVRQ----- J9VRY2/363-640 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMSRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLVKLAFML--GVEDISLVTGNELYRPGVLMVQVNGTLIGVTNMAKRFVR------ F8MQD2/306-554 ----------------------NRPKFG--AAPRRNHAEEGLDALANLVIAHVTVEG-----LDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTS-DTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKG---------------------------- Q9P6E7/306-554 ----------------------NRPKFG--AAPRRNHAEEGLDALANLVIAHVTVEG-----LDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTS-DTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKG---------------------------- E6RAD8/286-564 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLVKMAFML--GVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKKFVRQ----- A0A0D0V8V5/286-566 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLVRMAFML--GVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKRFVRQFR--- A0A226BC45/363-640 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMSRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPEAPLVKLAFML--GVEDISLVTGNELYRPGVLMVQVNGTLIGVTNMAKRFVR------ F5HAL3/286-564 ---------------IGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRN-----MNFRPKCIYLATMARRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS-DTPEGEACGLVKNLALMTHITTDVPETPLVKMAFML--GVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKRFVRQ----- #=GC scorecons 0000000000000002222221643634114435344464645697457667969540000056959956969594998859536445899897899999997999699999959956596694469456587795547954448454654964654958569995699956597967798799978779978989979999799979997997999998957099789999998999999988996668476477574500575484446957564461111111111111111111111000000 #=GC scorecons_70 ______________________*_______________*____***__**_****________**_**_**_*_*_****_*______******************_******_**_*_*__*__**__*_****___**____*___*__**____*_*__***_****_*_************************************************_*_**************************_**_**_*_____*__*___**_*____*____________________________ #=GC scorecons_80 ____________________________________________**__*__**_*_________*_**__*_*_*_****_*______******************_******_**___*__*___*____****___**____*______*_____*_*__***__***___***_**********_*********************************_*_**********************___*_*__*__*________*____*_*_________________________________ #=GC scorecons_90 ____________________________________________*_______*_*_________*_**__*_*_*_**_*_*_______****_********_***_******_**___*__*___*____*__*____*____*______*_____*____***__***___*_*___*__***_*__**_*****_****_***_***_**_*******___**_*******************___*________________*____*___________________________________ //