# STOCKHOLM 1.0
#=GF ID 3.90.1010.10/FF/000011
#=GF DE Nitrogen fixation protein NifU
#=GF AC 3.90.1010.10/FF/000011
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 83.383
#=GS O25009/12-160      AC O25009
#=GS O25009/12-160      OS Helicobacter pylori 26695
#=GS O25009/12-160      DE Nitrogen fixation protein NifU
#=GS O25009/12-160      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS Q74BM9/4-141       AC Q74BM9
#=GS Q74BM9/4-141       OS Geobacter sulfurreducens PCA
#=GS Q74BM9/4-141       DE Nitrogen fixation protein NifU
#=GS Q74BM9/4-141       DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; 
#=GS Q8TSI9/11-143      AC Q8TSI9
#=GS Q8TSI9/11-143      OS Methanosarcina acetivorans C2A
#=GS Q8TSI9/11-143      DE NifU family protein
#=GS Q8TSI9/11-143      DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; 
#=GS B8DZS2/2-131       AC B8DZS2
#=GS B8DZS2/2-131       OS Dictyoglomus turgidum DSM 6724
#=GS B8DZS2/2-131       DE Nitrogen-fixing NifU domain protein
#=GS B8DZS2/2-131       DR ORG; Bacteria; Dictyoglomi; Dictyoglomia; Dictyoglomales; Dictyoglomaceae; Dictyoglomus; Dictyoglomus turgidum; 
#=GS M3URY1/12-161      AC M3URY1
#=GS M3URY1/12-161      OS Entamoeba histolytica HM-1:IMSS-B
#=GS M3URY1/12-161      DE Fe-S cluster assembly protein NifU, putative
#=GS M3URY1/12-161      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS K2H4X5/12-161      AC K2H4X5
#=GS K2H4X5/12-161      OS Entamoeba nuttalli P19
#=GS K2H4X5/12-161      DE Fe-S cluster assembly protein NifU, putative
#=GS K2H4X5/12-161      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba nuttalli; 
#=GS A0A0E3NSB9/38-169  AC A0A0E3NSB9
#=GS A0A0E3NSB9/38-169  OS Methanosarcina sp. WH1
#=GS A0A0E3NSB9/38-169  DE Scaffold protein
#=GS A0A0E3NSB9/38-169  DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. WH1; 
#=GS A0A0E3L379/38-169  AC A0A0E3L379
#=GS A0A0E3L379/38-169  OS Methanosarcina sp. WWM596
#=GS A0A0E3L379/38-169  DE Uncharacterized protein
#=GS A0A0E3L379/38-169  DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. WWM596; 
#=GS A0A0E3NZA1/1-134   AC A0A0E3NZA1
#=GS A0A0E3NZA1/1-134   OS Methanosarcina sp. MTP4
#=GS A0A0E3NZA1/1-134   DE Scaffold protein
#=GS A0A0E3NZA1/1-134   DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. MTP4; 
#=GS Q17VV8/12-160      AC Q17VV8
#=GS Q17VV8/12-160      OS Helicobacter acinonychis str. Sheeba
#=GS Q17VV8/12-160      DE Nitrogen fixation protein NifU
#=GS Q17VV8/12-160      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter acinonychis; 
#=GS M2RFN6/12-161      AC M2RFN6
#=GS M2RFN6/12-161      OS Entamoeba histolytica KU27
#=GS M2RFN6/12-161      DE Ironsulfur cluster NifU family protein
#=GS M2RFN6/12-161      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS N9TNI3/12-161      AC N9TNI3
#=GS N9TNI3/12-161      OS Entamoeba histolytica HM-1:IMSS-A
#=GS N9TNI3/12-161      DE Iron-sulfur cluster NifU family protein, putative
#=GS N9TNI3/12-161      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M7WQE5/12-161      AC M7WQE5
#=GS M7WQE5/12-161      OS Entamoeba histolytica HM-3:IMSS
#=GS M7WQE5/12-161      DE Iron-sulfur cluster NifU family protein
#=GS M7WQE5/12-161      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS Q8MU40/12-161      AC Q8MU40
#=GS Q8MU40/12-161      OS Entamoeba histolytica
#=GS Q8MU40/12-161      DE Fe-S cluster assembly protein NifU, putative
#=GS Q8MU40/12-161      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS A0A2J9KKG9/12-160  AC A0A2J9KKG9
#=GS A0A2J9KKG9/12-160  OS Helicobacter pylori
#=GS A0A2J9KKG9/12-160  DE Nitrogen fixation protein NifU
#=GS A0A2J9KKG9/12-160  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS A0A1Y3DZV4/12-160  AC A0A1Y3DZV4
#=GS A0A1Y3DZV4/12-160  OS Helicobacter pylori SS1
#=GS A0A1Y3DZV4/12-160  DE Nitrogen fixation protein NifU
#=GS A0A1Y3DZV4/12-160  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS A0A0D5N2V8/4-141   AC A0A0D5N2V8
#=GS A0A0D5N2V8/4-141   OS Geobacter sulfurreducens
#=GS A0A0D5N2V8/4-141   DE Nitrogen fixation protein NifU
#=GS A0A0D5N2V8/4-141   DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; 
#=GF SQ 17
O25009/12-160              -WDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRLYWLVDESTDRIVDAKFKSFGCGTAIASSDMMVELCLNKRVQDAVKITNLDVERGLRDDPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNA--------EDFEEEIIV-
Q74BM9/4-141               ----YTEKVREHFLNPRNVGEIPDADA--------VGEVGSLACGDALKLYIKLDEAKEKIVDAKFQTFGCASAIASSSALTEIIKGKTLDEALATTNQEIAEFL------GGLPEEKMHCSVMGQEALEVAIAKFRGGPVPTHHDHGHEEAEGEI---
Q8TSI9/11-143              -KFPYSEKVLEHFRNPHNVGKIENADG--------KGLEGSPACGDMVAVYIKVEPETKVIEDVKFESYGCASNIATGSVITDLAKGKTLDEAKKITWKQASEEL------GGLPPIKAHCSVLAVEGLRAAIRDYEEKHG--------LVTEKEP---
B8DZS2/2-131               --LRYTDIVLEHFKNPRNVGVIEDPDG--------YAIEGSPACGDQIVVYIKVDPNTKVITDIKFQSFGCASNIATGSMMTEMVKGKTIEEALKLTWKDVVDAL------GGLPPVKLHCSVLAIDGLKAAIRNYLG-----------EKTEGKLS--
M3URY1/12-161              -WEHYSKKVKDHMDNPQHRGEITEEEGKEHGWKVIVADWGAEACGDAVRMYWGVNPKTNIVEKATFKSFGCGTAIASSDVTAELCIGKTVDECLKITNLDVERAMRDSPDVPAVPPQKMHCSVMSYDVVKKAASLYKGVNV--------EDLDDEEIVC
K2H4X5/12-161              -WEHYSKKVKDHMDNPQHRGEITEEEGKEHGWKVIVADWGAEACGDAVRMYWGVNPKTNIVEKATFKSFGCGTAIASSDVTAELCIGKTVDECLKITNLDVERAMRDSPDVPAVPPQKMHCSVMSYDVVKKAASLYKGVNV--------EDLDDEEIVC
A0A0E3NSB9/38-169          -KFPYNEKVLEHFRNPHNVGKIENPDG--------KGLEGSPACGDMVAVYIKVEPETKVIEDVKFESYGCASNIATGSVITDLARGKTLDEAKKITWKQASEEL------GGLPPIKAHCSVLAVEGLRAAIRDYEEKHG--------LVTEKE----
A0A0E3L379/38-169          -KFPYNEKVLEHFRNPHNVGKIENPDG--------KGLEGSPACGDMVAVYIKVEPETKVIEDVKFESYGCASNIATGSVITDLARGKTLDEAKKITWKQASEEL------GGLPPIKAHCSVLAVEGLRAAIRDYEEKHG--------LVTEKE----
A0A0E3NZA1/1-134           MKFPYSEKVLEHFRNPRNVGKIEDPDG--------KGLEGSPACGDMVAVYIKVEPETKVIEDVKFESYGCASNIATGSVITELAKGRTLEEAKKITWKQASEEL------GGLPPIKAHCSVLAVEGLRAAIRDYEEKHG--------LVTEQEE---
Q17VV8/12-160              -WDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRLYWLVDESTDTIIDAKFKSFGCGTAIASSDMMIELCLNKRVQDAVKITNLDVERGLRDDPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNA--------EDFEEEIIV-
M2RFN6/12-161              -WEHYSKKVKDHMDNPQHRGEITEEEGKEHGWKVIVADWGAEACGDAVRMYWGVNPKTNIVEKATFKSFGCGTAIASSDVTAELCIGKTVDECLKITNLDVERAMRDSPDVPAVPPQKMHCSVMSYDVVKKAASLYKGVNV--------EDLDDEEIVC
N9TNI3/12-161              -WEHYSKKVKDHMDNPQHRGEITEEEGKEHGWKVIVADWGAEACGDAVRMYWGVNPKTNIVEKATFKSFGCGTAIASSDVTAELCIGKTVDECLKITNLDVERAMRDSPDVPAVPPQKMHCSVMSYDVVKKAASLYKGVNV--------EDLDDEEIVC
M7WQE5/12-161              -WEHYSKKVKDHMDNPQHRGEITEEEGKEHGWKVIVADWGAEACGDAVRMYWGVNPKTNIVEKATFKSFGCGTAIASSDVTAELCIGKTVDECLKITNLDVERAMRDSPDVPAVPPQKMHCSVMSYDVVKKAASLYKGVNV--------EDLDDEEIVC
Q8MU40/12-161              -WEHYSKKVKDHMDNPQHRGEITEEEGKEHGWKVIVADWGAEACGDAVRMYWGVNPKTNIVEKATFKSFGCGTAIASSDVTAELCIGKTVDECLKITNLDVERAMRDSPDVPAVPPQKMHCSVMSYDVVKKAASLYKGVNV--------EDLDDEEIVC
A0A2J9KKG9/12-160          -WDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRLYWLVDESTDRIVDAKFKSFGCGTAIASSDMMVELCLNKRVQDAVKITNLDVERGLRDDPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNA--------EDFEEEIIV-
A0A1Y3DZV4/12-160          -WDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRLYWLVDESTDRIVDAKFKSFGCGTAIASSDMMVELCLNKRVQDAVKITNLDVERGLRDDPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNA--------EDFEEEIIV-
A0A0D5N2V8/4-141           ----YTEKVREHFLNPRNVGEIPDADA--------VGEVGSLACGDALKLYIKLDEAKEKIVDAKFQTFGCASAIASSSALTEIIKGKTLDEALATTNQEIAEFL------GGLPEEKMHCSVMGQEALEVAIAKFRGGPVPTHHDHGHEEAEGEI---
#=GC scorecons             032396569457549946494946456211112124642964999957459447554744746669577996669966554577436866676476944564537221221566954959999654745649543836344000000005447482220
#=GC scorecons_70          ____*___*__*__**___*_*____*____________*__****_*__*__*___*__*_*__*_****___****____**__***__*__***_______*________**__*_*****__*____*___*_*______________*_*____
#=GC scorecons_80          ____*___*__*__**___*_*_________________*__****_*__*__*___*__*____*_****___**______**___*___*__*_*_________________*__*_****________*___*________________*_*____
#=GC scorecons_90          ____*___*_____**___*_*_________________*__****____*______________*___**___**___________*________*_________________*__*_****________*___*__________________*____
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