# STOCKHOLM 1.0 #=GF ID 3.60.21.50/FF/000003 #=GF DE DNA polymerase II small subunit #=GF AC 3.60.21.50/FF/000003 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 88.700 #=GS B0R7U1/233-508 AC B0R7U1 #=GS B0R7U1/233-508 OS Halobacterium salinarum R1 #=GS B0R7U1/233-508 DE DNA polymerase II small subunit #=GS B0R7U1/233-508 DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; #=GS B0R7U1/233-508 DR EC; 2.7.7.7; 3.1.11.1; #=GS Q58113/312-558 AC Q58113 #=GS Q58113/312-558 OS Methanocaldococcus jannaschii DSM 2661 #=GS Q58113/312-558 DE DNA polymerase II small subunit #=GS Q58113/312-558 DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; #=GS Q58113/312-558 DR EC; 2.7.7.7; 3.1.11.1; #=GS B1L6Q2/192-463 AC B1L6Q2 #=GS B1L6Q2/192-463 OS Candidatus Korarchaeum cryptofilum OPF8 #=GS B1L6Q2/192-463 DE DNA polymerase II small subunit #=GS B1L6Q2/192-463 DR ORG; Archaea; Candidatus Korarchaeota; Candidatus Korarchaeum; Candidatus Korarchaeum cryptofilum; #=GS A9A4Z3/203-477 AC A9A4Z3 #=GS A9A4Z3/203-477 OS Nitrosopumilus maritimus SCM1 #=GS A9A4Z3/203-477 DE DNA polymerase II small subunit #=GS A9A4Z3/203-477 DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; #=GS Q8TUM9/376-650 AC Q8TUM9 #=GS Q8TUM9/376-650 OS Methanosarcina acetivorans C2A #=GS Q8TUM9/376-650 DE DNA polymerase II small subunit #=GS Q8TUM9/376-650 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; #=GS Q5JET1/448-733 AC Q5JET1 #=GS Q5JET1/448-733 OS Thermococcus kodakarensis KOD1 #=GS Q5JET1/448-733 DE DNA polymerase II small subunit #=GS Q5JET1/448-733 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS I3D500/204-477 AC I3D500 #=GS I3D500/204-477 OS Candidatus Nitrosopumilus salaria BD31 #=GS I3D500/204-477 DE DNA polymerase II small subunit #=GS I3D500/204-477 DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Candidatus Nitrosopumilus salaria; #=GS A0A0E3NTE4/402-676 AC A0A0E3NTE4 #=GS A0A0E3NTE4/402-676 OS Methanosarcina sp. WH1 #=GS A0A0E3NTE4/402-676 DE DNA polymerase II small subunit #=GS A0A0E3NTE4/402-676 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. WH1; #=GS A0A0E3PBF7/407-680 AC A0A0E3PBF7 #=GS A0A0E3PBF7/407-680 OS Methanosarcina siciliae T4/M #=GS A0A0E3PBF7/407-680 DE DNA polymerase II small subunit #=GS A0A0E3PBF7/407-680 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina siciliae; #=GS A0A0E3SAW9/391-661 AC A0A0E3SAW9 #=GS A0A0E3SAW9/391-661 OS Methanosarcina lacustris Z-7289 #=GS A0A0E3SAW9/391-661 DE DNA polymerase II small subunit #=GS A0A0E3SAW9/391-661 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina lacustris; #=GS A0A0F8JKT6/2-278 AC A0A0F8JKT6 #=GS A0A0F8JKT6/2-278 OS Methanosarcina mazei #=GS A0A0F8JKT6/2-278 DE Uncharacterized protein #=GS A0A0F8JKT6/2-278 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GS W8NVW6/441-723 AC W8NVW6 #=GS W8NVW6/441-723 OS Thermococcus nautili #=GS W8NVW6/441-723 DE DNA polymerase II small subunit #=GS W8NVW6/441-723 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus nautili; #=GS A0A142CVA2/440-725 AC A0A142CVA2 #=GS A0A142CVA2/440-725 OS Thermococcus peptonophilus #=GS A0A142CVA2/440-725 DE DNA polymerase II small subunit #=GS A0A142CVA2/440-725 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus peptonophilus; #=GS A0A097QS16/440-723 AC A0A097QS16 #=GS A0A097QS16/440-723 OS Thermococcus eurythermalis #=GS A0A097QS16/440-723 DE DNA polymerase II small subunit #=GS A0A097QS16/440-723 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus eurythermalis; #=GS A0A2Z2ML61/416-700 AC A0A2Z2ML61 #=GS A0A2Z2ML61/416-700 OS Thermococcus barossii #=GS A0A2Z2ML61/416-700 DE DNA polymerase II small subunit #=GS A0A2Z2ML61/416-700 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus barossii; #=GS Q9HMR7/233-508 AC Q9HMR7 #=GS Q9HMR7/233-508 OS Halobacterium salinarum NRC-1 #=GS Q9HMR7/233-508 DE DNA polymerase II small subunit #=GS Q9HMR7/233-508 DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; #=GS Q9HMR7/233-508 DR EC; 2.7.7.7; 3.1.11.1; #=GS A0A0E3PUZ3/383-656 AC A0A0E3PUZ3 #=GS A0A0E3PUZ3/383-656 OS Methanosarcina siciliae C2J #=GS A0A0E3PUZ3/383-656 DE DNA polymerase II small subunit #=GS A0A0E3PUZ3/383-656 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina siciliae; #=GS A0A0E3RJT0/375-647 AC A0A0E3RJT0 #=GS A0A0E3RJT0/375-647 OS Methanosarcina mazei S-6 #=GS A0A0E3RJT0/375-647 DE DNA polymerase II small subunit #=GS A0A0E3RJT0/375-647 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GS A0A0E3RET8/375-647 AC A0A0E3RET8 #=GS A0A0E3RET8/375-647 OS Methanosarcina mazei SarPi #=GS A0A0E3RET8/375-647 DE DNA polymerase II small subunit #=GS A0A0E3RET8/375-647 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GS Q8PX77/375-647 AC Q8PX77 #=GS Q8PX77/375-647 OS Methanosarcina mazei Go1 #=GS Q8PX77/375-647 DE DNA polymerase II small subunit #=GS Q8PX77/375-647 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GF SQ 20 B0R7U1/233-508 DDIYFPEVPRTYSPS-TADRSVQAALISDVHVGSQEFAADAWRSFADWLHTPA--------AESVEYLLIAGDMVEGVGVYPGQDEELDIVDIYDQYETFAEHLKDVPGDMEIVMIPGNHDAVRLAEPQPAFDEELRSIM-R-AHDARITSNPSTVTIDGVSVLLYHGVSLDEVIAEHPSDDVTYDDPQN---AMELLLKKRHVAPPFGGRTRLAPEAEDHLAIDTVPDVFHTGHVHKLGVGIHHNVRLVNSGCWQHQTAFQESVNISPDVATAPILDLDTLDIT-VHKFS----- Q58113/312-558 --------PPKEPKR--IDEEIYMAFLSDIHVGSKEFLHKEFEKFIRFLNGDVDNELEEKVVSRLKYICIAGDLVDGVGVYPGQEEDLYEVDIIEQYREIAMYLDQIPEHISIIISPGNHDAVRPAEPQPKLPEKITKLF-N-RDNIYFVGNPCTLNIHGFDTLLYHGRSFDDLVGQIRA--ASYENPVT---IMKELIKRRLLCPTYGGRCPIAPEHKDYLVIDRDIDILHTGHIHINGYGIYRGVVMVNSGTFQEQTDFQKR-------------------------------- B1L6Q2/192-463 -----PDVKSDEVSE--GRHEGRAVMISDVHVGSRYFNEWAFEKFVRWLRSED--------ARDVRYLIICGDLVDGIGVYPNQEEELRISDVYKQFEYAGRFLSRIPSGIKVIYIPGNHEPVRQAEPQPELQSDYLDILLDANHNIVALPNPSMVKIGSLSILLYHGRSLNAVMKHIPG--LQPVNPQTVVEAMSWILRLRNLVPIYGEH-PISPEERDWLLIENPPNLFHTGHVHVYGVGDYRGVKLVNSGTFENETPYIRSLGIEVTVGKVPVLNLENLEIK-IMDFQ----- A9A4Z3/203-477 ------DIPDQATNK--SESEAYAVFLSDLHIGSKYFMEEELTEFFSWISSPD------PTAKKIRFILIGGDMVDGVGIYPNQNKELVCQTIEEQLKKVESLIDQIPKNIKIIIMPGNHDPGRRALPQPAIPKKYNSGLWD-RENVIMVGNPAVVSLNGVKVMMFHGQSIDDIVKTTPG--LSYDKPTN---VMKHLLRARHLSPIYGSQTPIAPEMQDLMVIEDIPDIFHVGHVHKAQLDMYKGILLVNSGSWQKQTPFQASVGMTPNPGIALLVNLKTFQVF-HQNYNSNLDN Q8TUM9/376-650 -----PDVPNSVQRR--TGSHGKVVLISDVHVGSSQFLEDSWLDFLDFLKGESDSEEMQEIAAQVRYLVVAGDLVDGIGIYPDQEMELDILDVYEQYRKAAEYFREVPEHIHVIISPGNHDAVRQAEPQPALPERICADF---PENVTFVGNPALVDLDGVQILIYHGRSIDDLVASVPG--VSYQEPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQAQTEFQKRVNLMPMPARVPVVDLADFDVK-ILAFD----- Q5JET1/448-733 ---FLPDVPKFKRSKPPLEEKVYAILLSDIHVGSNKFCEEAFIKFLEWLNGEVNSRTEEELVSRIKYIIIGGDVVDGVGIYPGQYNELAIPDIFDQYEALANLLKQVPDHITMFIGPGNHDAARTALPQPGFYEEYAKPLYK-LKNAVIISNPAVIRLHGRDFLVAHGRGIEDVVDFVPN--RSHHRPAE---AMVELLKLRHIAPTFGNKVPIAPDPEDTLVIESVPDLFQAGHVHVMQYKTYNGVFVINTGTWQAQTEFQKMVNIIPTPARVPIIDVETARLRAVVRFDQ-FCE I3D500/204-477 -------IPEQAKNK--SETEAYAVFLSDLHIGSKYFMEEEFAEFVSWISSPD------PTARKIRFVLIGGDVVDGVGIYPNQNKELVCLTIQEQLKKVEDLIDKIPKNVKIIIMPGNHDPGRRALPQPAIPKKYNSGLWD-RENVIMVGNPAVVSLNGVRVMMFHGQSIDDIVKTTPG--LSYDKPTN---VMKHLLRARHLSPIYGSQTPIAPEMEDLLVIEDIPDIFHVGHVHRAELDMYKGILLINSGSWQKQTPFQASVGMTPNPGIAIMVNLKTFQVF-HENYSSNLDN A0A0E3NTE4/402-676 -----PDVPNSVQRR--TGSYGKAVLISDVHVGSSQFLEEAWLDFLDFLKGESDSEEMREIAAQVRYLVVAGDLVDGIGIYPDQEMELDILDVYEQYRKAAEYFREVPEHIHVIISPGNHDAVRQAEPQPALPERICADF---PKNVTFVGNPALVDLDGVRILIYHGRSIDDLVASVPG--VSYQDPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQAQTEFQKRVNLMPVPARVPVVDLADFDVK-ILAFD----- A0A0E3PBF7/407-680 ------DVPNSVQRR--TGSHGKAVLISDVHVGSSQFLEDSWLDFLDFLKGESDSEEMREIAAQVRYLVVAGDLVDGIGIYPDQEMELDIPDVYEQYRKAAEYIREVPEQIHVIISPGNHDAVRQAEPQPALPARICADF---PENVTFVGNPALVDLDGVQILIYHGRSIDDLVASVPG--VSYQEPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQGQTEFQKRVNLMPMPARVPVVDLANFDVK-ILAFD----- A0A0E3SAW9/391-661 ---------NSVQRR--TGSHGKAVLISDIHVGSSQFLEEAWLDFLDFLKGESDSEEMREIAAQVRYLVVAGDLVDGIGIYPDQEMELDIQDVYAQYRKAAEYFKEIPEHIHVIISPGNHDAVRQAEPQPALPERICADF---PANVTFVGNPALVDLDGVRILIYHGRSIDDLVASVPG--VSYQEPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQAQTEFQKRVNLMPVPARVPVVDLADFDVK-ILAFD----- A0A0F8JKT6/2-278 ---YKRQVPNSIQHR--TGSHGKVVLISDVHVGSSQFLEDAWLDFLDFLKGESDSEEMREIASQVRYLVVAGDLVDGIGIYPDQEMELDILDVYEQYRKAADYFKEIPRHIRVIISPGNHDAVRQAEPQPALPERICADF---PENVTFVGNPALVDLDGIRILIYHGRSIDDLVASVPG--VSYHEPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQAQTEFQKRVNLVPVPARVPVVDLADFDVK-ILAFD----- W8NVW6/441-723 ------DVPKFRREKPPLEEKVYAILLSDIHVGSNKFCEKAFEKFLEWLNGEVNSRAEEELVSRIKYLIIGGDVVDGVGIYPGQYNELAIPDIFDQYEALANLLRNVPEHITMFIGPGNHDAARTALPQPGFYEEYAKPIYK-LKNAVILSNPAVINLHGREFLIAHGRGIEDVVDFIPG--RTHHKPAE---AMVDLLKLRHLAPTFGNKVPIAPDPEDTLVIESVPDLFQAGHVHVMEYRIYNGVFVINSGTWQAQTEFQKMVNIIPTPARVPIIDVETARLRAVVSFDQ-FCE A0A142CVA2/440-725 ---FLPDVPKFKRSKPPLEEKVYAILLSDIHVGSNKFCEEAFIKFLEWLNGEVNSRTEEELVSRIKYIIIGGDVVDGVGIYPGQYNELAIPDIFDQYEALANLLKQVPDHITMFIGPGNHDAARTALPQPGFYEEYAKPLYK-LKNAVIISNPAVIRLHGRDFLIAHGRGIEDVVDFVPN--RSHHRPAE---AMIELLKLRHIAPTFGNKVPIAPDPEDTLVIESVPDLFQAGHVHVMQYKIYNGVFVINTGTWQAQTEFQKMVNIIPTPARVPIIDVETSRVRAVVRFDQ-FCE A0A097QS16/440-723 -----PDVPKFRREKPPLEEKVYAILLSDIHVGSNKFCEKAFEKFLEWLNGEVNSRAEEELVSRIKYMIIGGDVVDGVGIYPGQYNELEIPDIFDQYEALANLLRNVPDHITMFIGPGNHDAARTALPQPGFYEEYAKPLYK-LKNAVIISNPAVINLHGREFLVAHGRGIEDVVDFIPG--RSHHHPAQ---AMVDLLKLRHIAPTFGNKVPIAPDPEDTLVIESVPDLFQAGHVHVMEYQIYSGVFVINTGTWQAQTEFQKMVNIVPTPARVPIIDVETARLRAVVSFDQ-FCE A0A2Z2ML61/416-700 ----LPDVPKFKREKPPLEEKVYAVLLSDIHVGSNKFCEKAFMRFLEWLNGEVNNKAEEEFVSRIKYMVIAGDVVDGIGIYPGQYNELAIPDIFDQYEALANLLSNVPDHITMFIGPGNHDAARTAIPQPGFYEEYARPLLK-LKNAVIISNPAVIRLHGRDFLIAHGRGIEDVVNFIPN--RSHHRPAE---AMLDLLKLRHLAPTFGEKVPIAPDPEDTLVIESVPDLFQAGHVHVMQYKMYNGVFLINTGTWQAQTEFQKMVNIVPTPARVPIIDVETARLRAVVRFDQ-FCE Q9HMR7/233-508 DDIYFPEVPRTYSPS-TADRSVQAALISDVHVGSQEFAADAWRSFADWLHTPA--------AESVEYLLIAGDMVEGVGVYPGQDEELDIVDIYDQYETFAEHLKDVPGDMEIVMIPGNHDAVRLAEPQPAFDEELRSIM-R-AHDARITSNPSTVTIDGVSVLLYHGVSLDEVIAEHPSDDVTYDDPQN---AMELLLKKRHVAPPFGGRTRLAPEAEDHLAIDTVPDVFHTGHVHKLGVGIHHNVRLVNSGCWQHQTAFQESVNISPDVATAPILDLDTLDIT-VHKFS----- A0A0E3PUZ3/383-656 ------DVPNSVQRR--TGSHGKAVLISDVHVGSSQFLEDSWLDFLDFLKGESDSEEMREIAAQIRYLVVAGDLVDGIGIYPDQEMELDIPDVYEQYRKAAEYIREVPEHIHVIISPGNHDAVRQAEPQPALPARICADF---PENVTFVGNPALVDLDGVQILIYHGRSIDDLVASVPG--VSYQEPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQGQTEFQKRVNLMPMPARVPVVDLADFDVK-ILAFD----- A0A0E3RJT0/375-647 -------VPNSIQHR--TGSHGKVVLISDVHVGSSQFLEDAWLDFLDFLKGESDSEEMREIASQVRYLVVAGDLVDGIGIYPDQEMELDILDVYEQYRKAADYFKEIPRHIRVIISPGNHDAVRQAEPQPALPERICADF---PENVTFVGNPALVDLDGIRILIYHGRSIDDLVASVPG--VSYHEPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQAQTEFQKRVNLVPVPARVPVVDLADFDVK-ILAFD----- A0A0E3RET8/375-647 -------VPNSIQHR--TGSHGKVVLISDVHVGSSQFLEDAWLDFLDFLKGESDSEEMREIASQVRYLVVAGDLVDGIGIYPDQEMELDILDVYEQYRKAADYFKEIPRHIRVIISPGNHDAVRQAEPQPALPERICADF---PENVTFVGNPALVDLDGIRILIYHGRSIDDLVASVPG--VSYHEPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQAQTEFQKRVNLVPVPARVPVVDLADFDVK-ILAFD----- Q8PX77/375-647 -------VPNSIQHR--TGSHGKVVLISDVHVGSSQFLEDAWLDFLDFLKGESDSEEMREIASQVRYLVVAGDLVDGIGIYPDQEMELDILDVYEQYRKAADYFKEIPRHIRVIISPGNHDAVRQAEPQPALPERICADF---PENVTFVGNPALVDLDGIRILIYHGRSIDDLVASVPG--VSYHEPAG---AVLEMLKRRHLAPTYGSRVSISPEKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVLLVNSGTWQAQTEFQKRVNLVPVPARVPVVDLADFDVK-ILAFD----- #=GC scorecons 00000236743243500454444666699698994493645534955574654232122336446686575995989797995943894647756975446455447945736574999987594949995546543435010347544559965747584458559966667674358500466449540007634687497669679464576973593659746886576998944544385584679796784895876475536356456556534345304337400000 #=GC scorecons_70 _______**______________*_*********__*_*_____*___*____________*__*_*__*_**_********_*__**_*_**__**___*_____**__*___*_******_*_*_***_______________*_____***_*_*_*___*__**_****_*___*____**__*_____**__***_*****_**____*_**__*_*_**_***__*_****______*__*_********_**_**__*___*____________________*______ #=GC scorecons_80 ________*__________________**_****__*_______*___*_________________*__*_**_***_****_*__**___*___*___________*__*_____*****__*_*_***_______________*_____**______*___*__**____*_*___*________*__________**_**__*_**____*_**__*___*___**__*_****______*__*__**_*_**_**_**__________________________________ #=GC scorecons_90 ___________________________**_****__*_______*_____________________*____**_***_*_**_*__**_______*___________*________*****__*_*_***_____________________**______*______**___________________*__________*__*___*__*______*___*___*____*____****______*__*___*_*__*_**_*___________________________________ //