# STOCKHOLM 1.0
#=GF ID 3.40.50.720/FF/000537
#=GF DE NADH-ubiquinone oxidoreductase 39 kDa subunit
#=GF AC 3.40.50.720/FF/000537
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 60.820
#=GS Q9VPE2/57-285      AC Q9VPE2
#=GS Q9VPE2/57-285      OS Drosophila melanogaster
#=GS Q9VPE2/57-285      DE NADH dehydrogenase (Ubiquinone) 39 kDa subunit, isoform A
#=GS Q9VPE2/57-285      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS T1G9Q1/50-277      AC T1G9Q1
#=GS T1G9Q1/50-277      OS Helobdella robusta
#=GS T1G9Q1/50-277      DE Uncharacterized protein
#=GS T1G9Q1/50-277      DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS E9G5T1/46-276      AC E9G5T1
#=GS E9G5T1/46-276      OS Daphnia pulex
#=GS E9G5T1/46-276      DE Uncharacterized protein
#=GS E9G5T1/46-276      DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS D2A3E2/56-326      AC D2A3E2
#=GS D2A3E2/56-326      OS Tribolium castaneum
#=GS D2A3E2/56-326      DE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial-like Protein
#=GS D2A3E2/56-326      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS Q7Q229/34-263      AC Q7Q229
#=GS Q7Q229/34-263      OS Anopheles gambiae
#=GS Q7Q229/34-263      DE AGAP010792-PA
#=GS Q7Q229/34-263      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS W5JDN0/51-279      AC W5JDN0
#=GS W5JDN0/51-279      OS Anopheles darlingi
#=GS W5JDN0/51-279      DE NADH-ubiquinone oxidoreductase 39 kDa subunit
#=GS W5JDN0/51-279      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Nyssorhynchus; darlingi group; Anopheles darlingi; 
#=GS A0A084VB40/50-279  AC A0A084VB40
#=GS A0A084VB40/50-279  OS Anopheles sinensis
#=GS A0A084VB40/50-279  DE AGAP010792-PA-like protein
#=GS A0A084VB40/50-279  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Anopheles; Laticorn; Myzorhynchus; hyrcanus group; Anopheles sinensis; 
#=GS A0A182YIX4/49-279  AC A0A182YIX4
#=GS A0A182YIX4/49-279  OS Anopheles stephensi
#=GS A0A182YIX4/49-279  DE Uncharacterized protein
#=GS A0A182YIX4/49-279  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles stephensi; 
#=GS B4IUH0/57-286      AC B4IUH0
#=GS B4IUH0/57-286      OS Drosophila yakuba
#=GS B4IUH0/57-286      DE Uncharacterized protein
#=GS B4IUH0/57-286      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS B4H7N4/54-282      AC B4H7N4
#=GS B4H7N4/54-282      OS Drosophila persimilis
#=GS B4H7N4/54-282      DE GL12793
#=GS B4H7N4/54-282      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; 
#=GS A0A1W4W6S1/57-285  AC A0A1W4W6S1
#=GS A0A1W4W6S1/57-285  OS Drosophila ficusphila
#=GS A0A1W4W6S1/57-285  DE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
#=GS A0A1W4W6S1/57-285  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS B4PET2/57-286      AC B4PET2
#=GS B4PET2/57-286      OS Drosophila yakuba
#=GS B4PET2/57-286      DE Uncharacterized protein
#=GS B4PET2/57-286      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS B4IAC1/57-286      AC B4IAC1
#=GS B4IAC1/57-286      OS Drosophila sechellia
#=GS B4IAC1/57-286      DE GM22299
#=GS B4IAC1/57-286      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS A0A3B0JVT2/54-282  AC A0A3B0JVT2
#=GS A0A3B0JVT2/54-282  OS Drosophila guanche
#=GS A0A3B0JVT2/54-282  DE Blast:NADH dehydrogenase
#=GS A0A3B0JVT2/54-282  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GS B3M9B1/57-285      AC B3M9B1
#=GS B3M9B1/57-285      OS Drosophila ananassae
#=GS B3M9B1/57-285      DE Uncharacterized protein
#=GS B3M9B1/57-285      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS Q29DC3/54-282      AC Q29DC3
#=GS Q29DC3/54-282      OS Drosophila pseudoobscura pseudoobscura
#=GS Q29DC3/54-282      DE Uncharacterized protein
#=GS Q29DC3/54-282      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS B3NIN3/57-286      AC B3NIN3
#=GS B3NIN3/57-286      OS Drosophila erecta
#=GS B3NIN3/57-286      DE Uncharacterized protein
#=GS B3NIN3/57-286      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS A0A0J9RYS1/57-286  AC A0A0J9RYS1
#=GS A0A0J9RYS1/57-286  OS Drosophila simulans
#=GS A0A0J9RYS1/57-286  DE Uncharacterized protein
#=GS A0A0J9RYS1/57-286  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GF SQ 18
Q9VPE2/57-285              --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGTQMILPYRGDDSDVIRLKVTGDLGQVLFHFYNLEDPASIRDAVKHSNVVINLVGRDFETKNFKFKDVHVNGAERIARIAREAGVERLIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAIINAAKDPDSAGRIYQAV---------------------------------------------------
T1G9Q1/50-277              --GRASFSGVVATVFGCTGYLGRYIVNRLGKVGTQVICPYRCDPYYLKDLKIGGELGQILFLPFHLKDEESMRKAMKYSNVVINLVGRDWETKNFSFEDVHIDGARRLARIARESGVERFIHVSHLLAQPNPPTIYQKKPSKFLSSKYEGELVVKDEFPDATIFRPADIFGAEDRFLRYYANGWRRARGAMPLWKGGEQTIKRPVYFGDIAEGIVSAALDCSTAGKTYDC----------------------------------------------------
E9G5T1/46-276              -GGRSSFNGVVATVFGANGHLGSVVCNKLGNTGTQLVLPYRGDFYDVAPLKMCGDLGQVYFTPYNLKDENSIRKALKHSNLVINVVGREWETRNFSFEDIYVKGPRTIARIAKECGVERMIHVSALNATEKPEPLMLKEGSKFLSAKWRGELAVREEFPEAVIFRPSDIFGSEDRFVTYYAAFWRRQGAGMPLWKKGEHTIKQPVCVGDVAQGILNAARNIDTNGQIYQAIG--------------------------------------------------
D2A3E2/56-326              -----------ATVFGCGGFIGRYVCNRLGKNGSQLILPYRGDPYDVMRLKVCGDLGQVYFHPFDLRDEESIEKVCRYSNVVINLIGRDWETRNFSFDDVHVKGARLLAKVAKRSGVERFIHLSALNAEETPEAVILKGGSKFLASKWRGEQAVLEEFPEATIFRPADVYGQEDRFLRYYGHIWRRQATYLPLWKKGEETIKQPVFVSDLASGIMAALKDSDTAGKVYQAVGPKRYYLSELVDWFFRVMRKDKDWGYWRYDMRYDPIFQIRVTLTEKLRVGF
Q7Q229/34-263              -GGRSSFNGIVATVFGSTGFLGRYVCNKLGKIGSQVIIPYRADHYEAMRLKLVGDLGQVLFHPYDLRDEEAIYKAVKYSNVVINLVGRDWETKNFTFKDVHVDGARRLARIAREAGVETFVHVSSLNATPNPQPFFTKEGSKFLASKYYGELAVREEFPDAIVFRPSDIYGQEDRFLRYYAHIWRRQFRAMPLWYKGERTIKQPVYCSDLAQGIVNAIKDSDSQGQTYQAV---------------------------------------------------
W5JDN0/51-279              --GRSSFNGIVATVFGSTGFLGRYVCNKLGKIGSQVIIPYRADHYEALRLKLVGDLGQVLFHPYDLRDEDAIRKAVKYSNVVINLVGRDWETKNFSFKDVHVEGARRLARIAREAGVEKFVHVSSLNATPTPQPFFTKEGSKFLQSKYYGELAVREEFPDAIVFRPADIYGQEDRFLRYYAHIWRRQFRAMPLWYKGERTIKQPVYCSDLAQGIINAIKDSDSQGQTYQAV---------------------------------------------------
A0A084VB40/50-279          -GGRSSFNGIVATVFGSTGFLGRYVCNKLGKIGSQVIIPYRADHYEALRLKLVGDLGQVLFHPYDLRDEEAIYKAVKHSNVVINLVGRDWETKNFTFKDVHVDGARRLARIARQAGVEKFVHVSSLNATPNPQPFFTKEGSKFLSSKYYGEQAVREEFPEAIVFRPSDIYGQEDRFLRYYAHIWRRQFRAMPLWYKGERTIKQPVYCADLAQGIVNAIKDSDSQGKTYQAV---------------------------------------------------
A0A182YIX4/49-279          TGGRSSFNGIVATVFGSTGFLGRYVCNKLGKIGSQVIIPYRADHYEALRLKLVGDLGQVLFHPYDLRDEEAIYKAVKYSNVVINLVGRDWETKNFTFKDVHVDGARRLARIARQAGVEKFVHVSSLNATPNPQPFFTKEGSKFLQSKYYGELAVREEFPEAIVFRPSDIYGQEDRFLRYYAHIWRRQFRAMPLWYKGERTIKQPVYCSDLAQGIVNAIKDSDSQGQTYQAV---------------------------------------------------
B4IUH0/57-286              --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGSQMILPYRGDDSDVIRLKVTGDLGQVLFHFYNLEDPASIREAVKHSNVVINLVGRDFETKNFKFKDVHVNGAERIARIAREAGVERFIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAIINAAKDPDSAGRVYQAVG--------------------------------------------------
B4H7N4/54-282              --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGTQMILPYRGEDSEVIRLKVTGDLGQVLFHFYNLEDAASIRNAVKHSNVVINLVGRDFETKNFKFKDVNVTGAERIARICREVGVERFIHLSSLNVEANPKPLYVKGGSEWLRSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGERTVKQPVYVTDVAQAIINAAKEPDSAGRIYQAV---------------------------------------------------
A0A1W4W6S1/57-285          --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGTQMILPYRGDDSEVIRLKVTGDLGQVLFHFYNLEDPTSIREAVKHSNVVINLVGRDFETKNFKFKDVHVSGAERIARIAREAGVERLIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVFVSDVAQAIINAAKDPDSAGRIYQAV---------------------------------------------------
B4PET2/57-286              --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGSQMILPYRGDDSDVIRLKVTGDLGQVLFHFYNLEDPASIREAVKHSNVVINLVGRDFETKNFKFKDVHVNGAERIARIAREAGVERFIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAIINAAKDPDSAGRVYQAVG--------------------------------------------------
B4IAC1/57-286              --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGSQMILPYRGDDSDVIRLKVTGDLGQVLFHFYNLEDPASIREAVKHSNVVINLVGRDFETKNFKFKDVHVNGAERIARIAREAGVERFIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAIINAAKDPDSAGRVYQAVG--------------------------------------------------
A0A3B0JVT2/54-282          --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGSQMILPYRGEDSEVIRLKVTGDLGQVLFHFYNLEDSASIRNAVKHSNVVINLVGRDFETKNFKFKDVNVTGAERIARICREAGVERLIHLSSLNVEANPKTLYVKGGSEWLRSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWYKGERTVKQPVYVTDVAQAIINAAKDPDTAGRIYQAV---------------------------------------------------
B3M9B1/57-285              --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGTQMILPYRGDDSDVIRLKVTGDLGQVLFHFYNLEDVPSIREAVKHSNVVINLVGRDFETKNFKFRDVHSNGAERIARISREAGVDRFIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVFVSDVAQAIVNAAKDPDSAGRIYQAV---------------------------------------------------
Q29DC3/54-282              --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGTQMILPYRGEDSEVIRLKVTGDLGQVLFHFYNLEDAASIRNAVKHSNVVINLVGRDFETKNFKFKDVNVTGAERIARICREVGVERFIHLSSLNVEANPKPLYVKGGSEWLRSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGELTVKQPVFVTDVAQAIINAAKEPDSAGRIYQAV---------------------------------------------------
B3NIN3/57-286              --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGTQMILPYRGDDSDVIRLKVTGDLGQVLFHFYNLEDPASIREAVKHSNVVINLVGRDFETKNFKFKDVHVNGAERIARIAREAGVERFIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHVWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAIINAAKDPDSAGRVYQAVG--------------------------------------------------
A0A0J9RYS1/57-286          --GRSSFNGIVATVFGATGFVGRYVCNKLGKSGSQMILPYRGDDSDVIRLKVTGDLGQVLFHFYNLEDPASIREAVKHSNVVINLVGRDFETKNFKFKDVHVNGAERIARIAREAGVERFIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRVRDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAIINAAKDPDSAGRVYQAVG--------------------------------------------------
#=GC scorecons             006656656569999956976977879799849695859995835664699649899986965759594468557587998999889985997994959877498566988776599877796959765469445549579659489649964967599596759969889599998799766999745479995799497989975596966966957747659559776100000000000000000000000000000000000000000000000000
#=GC scorecons_70          __**_**_*_******_***_**********_*_*_*_***_*_____***__*********_*_*_*__**__*_*************_*****_*_****_**__*******_*********_**___**_____*_**__*_***_***_***_**_*_*_*******_***************___****_***_*******__*_**_*_**_**_**_*__****___________________________________________________
#=GC scorecons_80          ___________*****__**_**********_*_*_*_***_*______**__******_*__*_*_*___*__*_*_***********_*****_*_**_*_**___***_*__***__**_*_**____*_____*_**__*_**__**__*___**_*_*_**_****_*********__****___****_***_*_****___*_*__*__*__*_*__*__***____________________________________________________
#=GC scorecons_90          ___________*****__*__*__*_*_**__*_*_*_***_*______**__******_*____*_*___*______*******_***_**_**_*_**___*____*______***___*_*_*_____*_____*__*__*__*__**__*___**_*___**_*__*_*****_**___***_____***__**_*_****___*_*__*__*_______*__*______________________________________________________
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