# STOCKHOLM 1.0
#=GF ID 3.40.50.620/FF/000278
#=GF DE (6-4)DNA photolyase
#=GF AC 3.40.50.620/FF/000278
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 71.986
#=GS 3fy4C01/1-140      AC O48652
#=GS 3fy4C01/1-140      OS Arabidopsis thaliana
#=GS 3fy4C01/1-140      DE (6-4)DNA photolyase
#=GS 3fy4C01/1-140      DR CATH; 3fy4; C:5-140; 
#=GS 3fy4C01/1-140      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS 3fy4C01/1-140      DR GO; GO:0003914; GO:0009411; 
#=GS 3fy4C01/1-140      DR EC; 4.1.99.13; 
#=GS G1N163/1-127       AC G1N163
#=GS G1N163/1-127       OS Meleagris gallopavo
#=GS G1N163/1-127       DE Uncharacterized protein
#=GS G1N163/1-127       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris; Meleagris gallopavo; 
#=GS G1N163/1-127       DR GO; GO:0005634; GO:0005829; GO:0009646; 
#=GS Q4V935/1-130       AC Q4V935
#=GS Q4V935/1-130       OS Danio rerio
#=GS Q4V935/1-130       DE Cry4 protein
#=GS Q4V935/1-130       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS Q4V935/1-130       DR GO; GO:0005737; GO:0009881; 
#=GS 3fy4B01/1-140      AC O48652
#=GS 3fy4B01/1-140      OS Arabidopsis thaliana
#=GS 3fy4B01/1-140      DE (6-4)DNA photolyase
#=GS 3fy4B01/1-140      DR CATH; 3fy4; B:4-140; 
#=GS 3fy4B01/1-140      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS 3fy4B01/1-140      DR GO; GO:0003914; GO:0009411; 
#=GS 3fy4B01/1-140      DR EC; 4.1.99.13; 
#=GS 3fy4A01/1-140      AC O48652
#=GS 3fy4A01/1-140      OS Arabidopsis thaliana
#=GS 3fy4A01/1-140      DE (6-4)DNA photolyase
#=GS 3fy4A01/1-140      DR CATH; 3fy4; A:4-140; 
#=GS 3fy4A01/1-140      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS 3fy4A01/1-140      DR GO; GO:0003914; GO:0009411; 
#=GS 3fy4A01/1-140      DR EC; 4.1.99.13; 
#=GS O48652/21-159      AC O48652
#=GS O48652/21-159      OS Arabidopsis thaliana
#=GS O48652/21-159      DE (6-4)DNA photolyase
#=GS O48652/21-159      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS O48652/21-159      DR GO; GO:0003914; GO:0009411; 
#=GS O48652/21-159      DR EC; 4.1.99.13; 
#=GS A0A0D3ADD6/22-162  AC A0A0D3ADD6
#=GS A0A0D3ADD6/22-162  OS Brassica oleracea var. oleracea
#=GS A0A0D3ADD6/22-162  DE Uncharacterized protein
#=GS A0A0D3ADD6/22-162  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A078GAW2/22-162  AC A0A078GAW2
#=GS A0A078GAW2/22-162  OS Brassica napus
#=GS A0A078GAW2/22-162  DE BnaC01g35950D protein
#=GS A0A078GAW2/22-162  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A226NIS5/1-126   AC A0A226NIS5
#=GS A0A226NIS5/1-126   OS Callipepla squamata
#=GS A0A226NIS5/1-126   DE Uncharacterized protein
#=GS A0A226NIS5/1-126   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae; Callipepla; Callipepla squamata; 
#=GS Q2TV23/1-126       AC Q2TV23
#=GS Q2TV23/1-126       OS Gallus gallus
#=GS Q2TV23/1-126       DE Cryptochrome-like protein
#=GS Q2TV23/1-126       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; 
#=GS Q2TV23/1-126       DR GO; GO:0005634; GO:0005829; GO:0009646; 
#=GS A0A226NTI2/1-126   AC A0A226NTI2
#=GS A0A226NTI2/1-126   OS Colinus virginianus
#=GS A0A226NTI2/1-126   DE Uncharacterized protein
#=GS A0A226NTI2/1-126   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae; Colinus; Colinus virginianus; 
#=GS Q7ZYX5/20-151      AC Q7ZYX5
#=GS Q7ZYX5/20-151      OS Danio rerio
#=GS Q7ZYX5/20-151      DE Cry4 protein
#=GS Q7ZYX5/20-151      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS Q7ZYX5/20-151      DR GO; GO:0005737; GO:0009881; 
#=GS B5DDF6/1-130       AC B5DDF6
#=GS B5DDF6/1-130       OS Danio rerio
#=GS B5DDF6/1-130       DE Cry4 protein
#=GS B5DDF6/1-130       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS B5DDF6/1-130       DR GO; GO:0005737; GO:0009881; 
#=GS F1R2R7/20-151      AC F1R2R7
#=GS F1R2R7/20-151      OS Danio rerio
#=GS F1R2R7/20-151      DE Cryptochrome circadian regulator 4
#=GS F1R2R7/20-151      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS F1R2R7/20-151      DR GO; GO:0005737; GO:0009881; 
#=GS Q9I912/1-130       AC Q9I912
#=GS Q9I912/1-130       OS Danio rerio
#=GS Q9I912/1-130       DE Cryptochrome 4
#=GS Q9I912/1-130       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS Q9I912/1-130       DR GO; GO:0005737; GO:0009881; 
#=GF SQ 15
3fy4C01/1-140              MATGSGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVS
G1N163/1-127               --MRHRTIHLFRKGLRLHDNPALLAALQSSE-VVYPVYILD--------RAFMTSSMHIGALRWHFLLQSLEDLRSSLCQLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRALGEELGFEVLS---
Q4V935/1-130               --MSHRTIHLFRKGLRLHDNPSLLGALASSS-ALYPVYVLD--------RVFLQGAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQTYTCVS
3fy4B01/1-140              MATGSGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVS
3fy4A01/1-140              MATGSGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVS
O48652/21-159              -ATGSGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVS
A0A0D3ADD6/22-162          MATGSNSLIWFRKGLRVHDNPALEHASKASSGSMYPVFVIDPRYMEPDPSAFSPGSSRAGVNRIRFLLESLKDLDSGLKKLGSRLLVLRGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDFKVKEYASSVGVEVFSPVS
A0A078GAW2/22-162          MATGSNSLIWFRKGLRVHDNPALEHASKASSGSMYPVFVIDPRYMEPDPSAFSPGSSRAGVNRIRFLLESLKDLDSGLKKLGSRLLVLRGEPGEVLVRCLREWKVKRLCFEYDTDPYYQALDFKVKEYASSVGVEVFSPVS
A0A226NIS5/1-126           --MQHRTIHLFRKGLRLHDNPALLAALQSSE-VVYPVYILD--------RAFMTSVMRIGALRWHFLLQSLEDLRSSLCQLGSCLLVIQGEYVEVVRDHVQKWNITQVTLDAEVEPFYKEMEANIRGLGEELGFQVL----
Q2TV23/1-126               --MRHRTIHLFRKGLRLHDNPALLAALQSSE-VVYPVYILD--------RAFMTSSMHIGALRWHFLLQSLEDLRSSLRQLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRGLGEELGFQVL----
A0A226NTI2/1-126           --MRHRTIHLFRKGLRLHDNPALLAALQSSE-VVYPVYILD--------RAFMTSVMRIGALRWHFLLQSLEDLRSSLCQLGSCLLVIQGEYVEVVRDHVQKWNITQVTLDAEVEPFYKEMEANIRGLGEELGFQVL----
Q7ZYX5/20-151              IAMSHRTIHLFRKGLRLHDNPSLLGALASSS-TLYPVYVLD--------RVFLQGAMHMGALRWRFLLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQTYTCIS
B5DDF6/1-130               --MSHRTIHLFRKGLRLHDNPSLLGALASSS-TLYPVYVLD--------RVFLQGAMHMGALRWRFLLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQTYTCIS
F1R2R7/20-151              VAMSHRTIHLFRKGLRLHDNPSLLGALASSS-ALYPVYVLD--------RVFLQGAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQTYTCVS
Q9I912/1-130               --MSHRTIHLFRKGLRLHDNPSLLGALASSS-ALYPVYVLD--------RVFLQGAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQTYTCVS
#=GC scorecons             125455664599999969999694395459503599977691011101156944655649649469996996996659446996969549544576454655947565457475797944673575446453956653244
#=GC scorecons_70          _______*__*************__*___*____*******_________**__*__*_*__*_*******_**_*_*__***_***__*____**___*__*_*_*___*_*_****__**__*___*___*_*______
#=GC scorecons_80          __________******_****_*__*___*____*****_*__________*_______*__*__***_**_**___*___**_*_*__*____*_______*____________***___*__________*________
#=GC scorecons_90          __________******_****_*__*___*____***___*__________*_______*__*__***_**_**___*___**_*_*__*____________*____________*_*______________*________
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