# STOCKHOLM 1.0
#=GF ID 3.40.50.2300/FF/000239
#=GF DE Trehalose operon repressor
#=GF AC 3.40.50.2300/FF/000239
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 13.481
#=GS 4xxhB02/103-219     AC P36673
#=GS 4xxhB02/103-219     OS Escherichia coli K-12
#=GS 4xxhB02/103-219     DE HTH-type transcriptional regulator TreR
#=GS 4xxhB02/103-219     DR CATH; 4xxh; B:163-279; 
#=GS 4xxhB02/103-219     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS 4xxhB02/103-219     DR GO; GO:0003700; GO:0045892; 
#=GS 4xxhA02/103-219     AC P36673
#=GS 4xxhA02/103-219     OS Escherichia coli K-12
#=GS 4xxhA02/103-219     DE HTH-type transcriptional regulator TreR
#=GS 4xxhA02/103-219     DR CATH; 4xxh; A:163-279; 
#=GS 4xxhA02/103-219     DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS 4xxhA02/103-219     DR GO; GO:0003700; GO:0045892; 
#=GS P36673/163-279      AC P36673
#=GS P36673/163-279      OS Escherichia coli K-12
#=GS P36673/163-279      DE HTH-type transcriptional regulator TreR
#=GS P36673/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS P36673/163-279      DR GO; GO:0003700; GO:0045892; 
#=GS Q328U4/163-279      AC Q328U4
#=GS Q328U4/163-279      OS Shigella dysenteriae Sd197
#=GS Q328U4/163-279      DE Repressor of treA,B,C
#=GS Q328U4/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; 
#=GS A0A0V9JC47/163-279  AC A0A0V9JC47
#=GS A0A0V9JC47/163-279  OS Citrobacter sp. 50677481
#=GS A0A0V9JC47/163-279  DE Trehalose repressor
#=GS A0A0V9JC47/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter sp. 50677481; 
#=GS I6F8M3/163-279      AC I6F8M3
#=GS I6F8M3/163-279      OS Shigella flexneri 1235-66
#=GS I6F8M3/163-279      DE Trehalose operon repressor
#=GS I6F8M3/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A200LAP1/163-279  AC A0A200LAP1
#=GS A0A200LAP1/163-279  OS Shigella sonnei
#=GS A0A200LAP1/163-279  DE Trehalose operon repressor
#=GS A0A200LAP1/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sonnei; 
#=GS A0A1E3N6J8/163-279  AC A0A1E3N6J8
#=GS A0A1E3N6J8/163-279  OS Shigella sp. FC569
#=GS A0A1E3N6J8/163-279  DE Trehalose operon repressor
#=GS A0A1E3N6J8/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sp. FC569; 
#=GS A0A3S5G4G5/163-279  AC A0A3S5G4G5
#=GS A0A3S5G4G5/163-279  OS Citrobacter sp. CFNIH10
#=GS A0A3S5G4G5/163-279  DE HTH-type transcriptional regulator TreR
#=GS A0A3S5G4G5/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter sp. CFNIH10; 
#=GS A0A381GFE0/163-279  AC A0A381GFE0
#=GS A0A381GFE0/163-279  OS Citrobacter amalonaticus
#=GS A0A381GFE0/163-279  DE Trehalose repressor
#=GS A0A381GFE0/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter amalonaticus; 
#=GS F5P3X1/163-279      AC F5P3X1
#=GS F5P3X1/163-279      OS Shigella flexneri K-227
#=GS F5P3X1/163-279      DE Trehalose operon repressor
#=GS F5P3X1/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS Q0SXI2/163-279      AC Q0SXI2
#=GS Q0SXI2/163-279      OS Shigella flexneri 5 str. 8401
#=GS Q0SXI2/163-279      DE Repressor of treA,B,C
#=GS Q0SXI2/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A127GSV7/163-279  AC A0A127GSV7
#=GS A0A127GSV7/163-279  OS Shigella flexneri 4c
#=GS A0A127GSV7/163-279  DE Trehalose repressor
#=GS A0A127GSV7/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS F5MW73/163-279      AC F5MW73
#=GS F5MW73/163-279      OS Shigella flexneri VA-6
#=GS F5MW73/163-279      DE Trehalose operon repressor
#=GS F5MW73/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A2S4N3C4/163-279  AC A0A2S4N3C4
#=GS A0A2S4N3C4/163-279  OS Shigella flexneri
#=GS A0A2S4N3C4/163-279  DE Repressor of treA,B,C
#=GS A0A2S4N3C4/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS D2AE66/163-279      AC D2AE66
#=GS D2AE66/163-279      OS Shigella flexneri 2002017
#=GS D2AE66/163-279      DE Repressor of treA,B,C
#=GS D2AE66/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A2Y2RUC0/163-279  AC A0A2Y2RUC0
#=GS A0A2Y2RUC0/163-279  OS Shigella flexneri 2a
#=GS A0A2Y2RUC0/163-279  DE Trehalose repressor
#=GS A0A2Y2RUC0/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A0H3ESQ8/163-279  AC A0A0H3ESQ8
#=GS A0A0H3ESQ8/163-279  OS Escherichia coli O83:H1 str. NRG 857C
#=GS A0A0H3ESQ8/163-279  DE Trehalose repressor
#=GS A0A0H3ESQ8/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A454AAU5/163-279  AC A0A454AAU5
#=GS A0A454AAU5/163-279  OS Escherichia coli 536
#=GS A0A454AAU5/163-279  DE Trehalose operon repressor
#=GS A0A454AAU5/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0G9FR67/163-279  AC A0A0G9FR67
#=GS A0A0G9FR67/163-279  OS Escherichia coli
#=GS A0A0G9FR67/163-279  DE HTH-type transcriptional regulator TreR
#=GS A0A0G9FR67/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS F4T847/163-279      AC F4T847
#=GS F4T847/163-279      OS Escherichia coli M605
#=GS F4T847/163-279      DE Trehalose operon repressor
#=GS F4T847/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS B7UQQ1/163-279      AC B7UQQ1
#=GS B7UQQ1/163-279      OS Escherichia coli O127:H6 str. E2348/69
#=GS B7UQQ1/163-279      DE DNA-binding transcriptional repressor
#=GS B7UQQ1/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A2D0NYG5/163-279  AC A0A2D0NYG5
#=GS A0A2D0NYG5/163-279  OS Escherichia coli O127:H6
#=GS A0A2D0NYG5/163-279  DE Trehalose repressor
#=GS A0A2D0NYG5/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A090NKZ4/163-279  AC A0A090NKZ4
#=GS A0A090NKZ4/163-279  OS Shigella dysenteriae WRSd3
#=GS A0A090NKZ4/163-279  DE Trehalose operon repressor
#=GS A0A090NKZ4/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; 
#=GS E2X421/163-279      AC E2X421
#=GS E2X421/163-279      OS Shigella dysenteriae 1617
#=GS E2X421/163-279      DE Trehalose operon repressor
#=GS E2X421/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; 
#=GS A0A2X2HG61/163-279  AC A0A2X2HG61
#=GS A0A2X2HG61/163-279  OS Shigella dysenteriae
#=GS A0A2X2HG61/163-279  DE Trehalose repressor
#=GS A0A2X2HG61/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; 
#=GS A0A024L8P0/163-279  AC A0A024L8P0
#=GS A0A024L8P0/163-279  OS Escherichia coli
#=GS A0A024L8P0/163-279  DE Transcriptional regulator
#=GS A0A024L8P0/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS C3SF73/163-279      AC C3SF73
#=GS C3SF73/163-279      OS Escherichia coli
#=GS C3SF73/163-279      DE HTH-type transcriptional regulator TreR
#=GS C3SF73/163-279      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0F6CCJ8/163-279  AC A0A0F6CCJ8
#=GS A0A0F6CCJ8/163-279  OS Escherichia coli Xuzhou21
#=GS A0A0F6CCJ8/163-279  DE Trehalose repressor
#=GS A0A0F6CCJ8/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0H3JKE9/163-279  AC A0A0H3JKE9
#=GS A0A0H3JKE9/163-279  OS Escherichia coli O157:H7
#=GS A0A0H3JKE9/163-279  DE Trehalose 6-phosphate-inducible trehalose regulon transcriptional repressor
#=GS A0A0H3JKE9/163-279  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GF SQ 30
4xxhB02/103-219             IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
4xxhA02/103-219             IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
P36673/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
Q328U4/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A0V9JC47/163-279          IKMLMQRLYDQGHRNISFLGVPHSDVTTGKRRHEAYLAFCKQRKLHPVAALPGLAMKQGYDHAASVITPETTALVCATDTLALGASKYLQEQRIDALQLASVGNTPLMKFLHPEIVT
I6F8M3/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A200LAP1/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A1E3N6J8/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKTHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A3S5G4G5/163-279          IKILMQRLYDQGHRHISFLGVPHSDVTTGKRRHDAYLAFCKQHKLHPVAALPGLAMKQGYEHAASVITPDTTALVCATDTLALGASKYLQEQRVDNLQLASVGNTPLMKFLHPEIVT
A0A381GFE0/163-279          IKILMQRLYDQGHRHISFLGVPHSDVTTGKRRHDAYLAFCKQHKLHPVAALPGLAMKQGYEHAASVITPDTTALVCATDTLALGASKYLQEQRVDNLQLASVGNTPLMKFLHPEIVT
F5P3X1/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
Q0SXI2/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A127GSV7/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
F5MW73/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A2S4N3C4/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
D2AE66/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A2Y2RUC0/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A0H3ESQ8/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKTHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A454AAU5/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKTHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A0G9FR67/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKTHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
F4T847/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKTHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
B7UQQ1/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKTHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A2D0NYG5/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKTHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A090NKZ4/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
E2X421/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A2X2HG61/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A024L8P0/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
C3SF73/163-279              IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A0F6CCJ8/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
A0A0H3JKE9/163-279          IKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVT
#=GC scorecons              997999999999996997999999999999999799999994799999999999999999866959999799996999999999999999999795999999999999999999999
#=GC scorecons_70           *****************************************_*******************__*_******************************_*********************
#=GC scorecons_80           **************_**************************_*******************__*_*********_********************_*********************
#=GC scorecons_90           **_***********_**_***************_*******__*****************___*_****_****_******************_*_*********************
//