# STOCKHOLM 1.0
#=GF ID 3.40.50.10810/FF/000078
#=GF DE Helicase domain containing protein
#=GF AC 3.40.50.10810/FF/000078
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 82.777
#=GS Q8MNV7/171-409      AC Q8MNV7
#=GS Q8MNV7/171-409      OS Caenorhabditis elegans
#=GS Q8MNV7/171-409      DE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 homolog
#=GS Q8MNV7/171-409      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q8MNV7/171-409      DR GO; GO:0005634; GO:0006259; GO:0006357; GO:0008094; GO:0036310; 
#=GS A0A2K3DSU7/221-480  AC A0A2K3DSU7
#=GS A0A2K3DSU7/221-480  OS Chlamydomonas reinhardtii
#=GS A0A2K3DSU7/221-480  DE Uncharacterized protein
#=GS A0A2K3DSU7/221-480  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A8J8C2/233-502      AC A8J8C2
#=GS A8J8C2/233-502      OS Chlamydomonas reinhardtii
#=GS A8J8C2/233-502      DE SNF2 superfamily protein
#=GS A8J8C2/233-502      DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS M3UXU7/315-551      AC M3UXU7
#=GS M3UXU7/315-551      OS Entamoeba histolytica HM-1:IMSS-B
#=GS M3UXU7/315-551      DE Helicase domain containing protein
#=GS M3UXU7/315-551      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS B8C2J6/5-271        AC B8C2J6
#=GS B8C2J6/5-271        OS Thalassiosira pseudonana
#=GS B8C2J6/5-271        DE Uncharacterized protein
#=GS B8C2J6/5-271        DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; 
#=GS B0ETJ2/339-571      AC B0ETJ2
#=GS B0ETJ2/339-571      OS Entamoeba dispar SAW760
#=GS B0ETJ2/339-571      DE Uncharacterized protein
#=GS B0ETJ2/339-571      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba dispar; 
#=GS K2H8J8/315-549      AC K2H8J8
#=GS K2H8J8/315-549      OS Entamoeba nuttalli P19
#=GS K2H8J8/315-549      DE Helicase domain containing protein
#=GS K2H8J8/315-549      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba nuttalli; 
#=GS C4LTN5/315-551      AC C4LTN5
#=GS C4LTN5/315-551      OS Entamoeba histolytica
#=GS C4LTN5/315-551      DE Helicase domain-containing protein
#=GS C4LTN5/315-551      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M2SE24/315-551      AC M2SE24
#=GS M2SE24/315-551      OS Entamoeba histolytica KU27
#=GS M2SE24/315-551      DE Helicase, putative
#=GS M2SE24/315-551      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS N9UHP4/314-550      AC N9UHP4
#=GS N9UHP4/314-550      OS Entamoeba histolytica HM-1:IMSS-A
#=GS N9UHP4/314-550      DE Helicase, putative
#=GS N9UHP4/314-550      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M7W2Q0/315-551      AC M7W2Q0
#=GS M7W2Q0/315-551      OS Entamoeba histolytica HM-3:IMSS
#=GS M7W2Q0/315-551      DE Helicase
#=GS M7W2Q0/315-551      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GF SQ 11
Q8MNV7/171-409              --QNIIGLTNFKP--KAAPSDLNTVMDPSLIERLFPYQKEGVIFALERDGRILLADEMGLGKSV-QALTIARYYKADWPLLIVCPASVKGAWKKQLNTFFP-----IIHRIFIVDKSSDPLPDVCTS------------------------NT-VAIMSYEQM--VLKHDILKKEKYRTIIFDESHMLKDGKARRTKVATDLSKVALHVILLSGTPALSRPSELF---TQIRLIDHKLFTNFHEFAIRYCDGKQGRFCFEAKGCTNSE-------ELA-----AIMFKRLM---------------------
A0A2K3DSU7/221-480          ---KRTSAWSPRTTYKQAEEWVLPKVDPELWGRLFAYQREGVLAGVRFGGRVLYADEMGLGKTV-QALTLMSCYTEDWPLLIICPTSLRFAWVAAVQQWLPPHLQPAPADLWQVGAVTDWDRLAAAAGIEPGSDHEEYPRGGGRAGGGGRLRPHIAVVSYDLATKIAPQHAS---RYRAIICDECHALKNRTTQRAQKIGPLVRAADRAVLCTGTAILNRPIELF---TQVDMLKPGLLGSYTEYGDRYCVNTANTF-YQQQQQQHQT---------------------------PNS--------------
A8J8C2/233-502              -EMRRVSACNERT--AACSQWVLPKVDPELWGRLFAYQREGVLAGVRFGGRVLYADEMGLGKTVQQALTLMSCYTEDWPLLIICPTSLRFAWVAAVQQWLPPHLQPAPADLWQVGAVTDWDRLAAAAGIEPGSDHEEYPRGGGRAGGGGRLRPHIAVVSYDLATKIAPQHASRAHRYRAIICDECHALKNRTTQRAQKIGPLVRAADRAVLCTGTAILNRPIELFTQVTQVDMLKPGLLGSYTEYGDRYCVNTANTF-YQQQQQQHQT---------------------------PNFPGQ-----------
M3UXU7/315-551              -CVRDLLVLDGKE--EQGDLDRYESIPSKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTL-QALALVSAYPENEHILVITPNSLVYQWCDQIQRWLD-----VDPNDIAIYKPKD----------------IEVP------------NTRFVVISYNSM--ANTQGNMFSHAFPMVICDECHFIKTDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELY---NILSVLIKDIGTKES-FGKRYCEETGTRY-KNYLSMKNEK-------ELKYLLT-TVMIRR-----------------------
B8C2J6/5-271                --------------YPKAKELISRGVGVGVAKALAPYQRGGVEFILDKEGRALLADEMGLGKTV-QAIAAMSAYRHEWPLLVLCPSTARYHWEIEFRHWLGKTSLAKGSDDINV--------------LTSGKDYILRYDG----------TTKVVICSLGLIVALVNNERIYPGMFKCVIVDESHALKNKSSKRTQSVVPLLKAADRCLLLSGTPALARPSELW---PQLSVLSDDFYAKYT-RGEKGEPDSGTRA-R-WVSCSSYADASFWLAELHTLLTSTVMIRRMKADILKNLPSKIREKAFISVMG
B0ETJ2/339-571              --VRDLLVLDGKE--DQGDLNRYESIPIKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTL-QALALVSAYPENEHILIITPNSLVYQWCDQIQRWLD-----VDPNDIAIYKPKD----------------IEVP------------NTRFVVISYNSM--ANTQGNMFSHSFPMVICDECHFIKTDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELY---NILSVLIKDIGTKES-FGKRYCEETGTRY-KNYLSMKNEK-------ELKYLLT-TVM--------------------------
K2H8J8/315-549              -CVRDLLVLDGKE--EQGDLDRYKSIPSKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTL-QALALVSAYPENEHILVITPNSLVYQWCDQIQRWLD-----VDPNDIAVYKPKD----------------IEVP------------NTRFVVISYNSM--ANTQGNMFSHAFPMVICDECHFIKTDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELY---NILSVLIKDIGTKES-FGKRYCEETGTRY-KNYLSMKNEK-------ELKYLLT-TVMI-------------------------
C4LTN5/315-551              -CVRDLLVLDGKE--EQGDLDRYESIPSKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTL-QALALVSAYPENEHILVITPNSLVYQWCDQIQRWLD-----VDPNDIAIYKPKD----------------IEVP------------NTRFVVISYNSM--ANTQGNMFSHAFPMVICDECHFIKTDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELY---NILSVLIKDIGTKES-FGKRYCEETGTRY-KNYLSMKNEK-------ELKYLLT-TVMIRR-----------------------
M2SE24/315-551              -CVRDLLVLDGKE--EQGDLDRYESIPSKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTL-QALALVSAYPENEHILVITPNSLVYQWCDQIQRWLD-----VDPNDIAIYKPKD----------------IEVP------------NTRFVVISYNSM--ANTQGNMFSHAFPMVICDECHFIKTDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELY---NILSVLIKDIGTKES-FGKRYCEETGTRY-KNYLSMKNEK-------ELKYLLT-TVMIRR-----------------------
N9UHP4/314-550              KCVRDLLVLDGKE--EQGDLDRYESIPSKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTL-QALALVSAYPENEHILVITPNSLVYQWCDQIQRWLD-----VDPNDIAIYKPKD----------------IEVP------------NTRFVVISYNSM--ANTQGNMFSHAFPMVICDECHFIKTDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELY---NILSVLIKDIGTKES-FGKRYCEETGTRY-KNYLSMKNEK-------ELKYLLT-TVMIR------------------------
M7W2Q0/315-551              -CVRDLLVLDGKE--EQGDLDRYESIPSKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTL-QALALVSAYPENEHILVITPNSLVYQWCDQIQRWLD-----VDPNDIAIYKPKD----------------IEVP------------NTRFVVISYNSM--ANTQGNMFSHAFPMVICDECHFIKTDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELY---NILSVLIKDIGTKES-FGKRYCEETGTRY-KNYLSMKNEK-------ELKYLLT-TVMIRR-----------------------
#=GC scorecons              012423232325300354433333364447344664998399355654499494699999997609976657494554569665947645493355647740000043454437243360000000000001010342401000000000056456749754500434644423337447959969469545569563435637494556656996695994995000546567335535534157476635555650333353454400000004421222033422200000001000000000000000
#=GC scorecons_70           _____________________________*___**_***_**___*___**_*__*********_****__*_*_____****_*_*____*______**_____________*____*_________________________________*___*_**________*_______*__**_****_**_____*_*____*_*_*___**_****_*_**_**_________*___________*_***______________________________________________________________
#=GC scorecons_80           _____________________________*______***_**_______**_*__********__***___*_*______*___*_*____*______**________________________________________________________*_*_________________*___*_**_*__*_____*________*_*_______**__*_**_**_________*___________*_*________________________________________________________________
#=GC scorecons_90           ____________________________________**__**_______**_*__*******___**______*______*___*______*__________________________________________________________________*_____________________*_**_*__*_____*__________*_______**__*_**_**________________________________________________________________________________________
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