# STOCKHOLM 1.0
#=GF ID 3.40.50.10190/FF/000080
#=GF DE S-M checkpoint control protein rad4
#=GF AC 3.40.50.10190/FF/000080
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 89.892
#=GS 6hm3A02/102-186     AC P32372
#=GS 6hm3A02/102-186     OS Schizosaccharomyces pombe 972h-
#=GS 6hm3A02/102-186     DE S-M checkpoint control protein rad4
#=GS 6hm3A02/102-186     DR CATH; 6hm3; A:102-186; 
#=GS 6hm3A02/102-186     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS 6hm3A02/102-186     DR GO; GO:0000790; GO:0005515; GO:0005634; GO:0005829; GO:0007095; GO:0031261; GO:0031297; GO:0033314; GO:0035861; GO:0043596; GO:0044732; GO:0060090; GO:0072686; GO:1902977; 
#=GS P38850/376-468      AC P38850
#=GS P38850/376-468      OS Saccharomyces cerevisiae S288C
#=GS P38850/376-468      DE Regulator of Ty1 transposition protein 107
#=GS P38850/376-468      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P38850/376-468      DR GO; GO:0005515; GO:0005634; GO:0006302; GO:0010526; GO:0035361; GO:0071944; GO:1903775; GO:1990683; GO:2000001; 
#=GS 4bu1B02/102-186     AC P32372
#=GS 4bu1B02/102-186     OS Schizosaccharomyces pombe 972h-
#=GS 4bu1B02/102-186     DE S-M checkpoint control protein rad4
#=GS 4bu1B02/102-186     DR CATH; 4bu1; B:102-185; 
#=GS 4bu1B02/102-186     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS 4bu1B02/102-186     DR GO; GO:0000790; GO:0005515; GO:0005634; GO:0005829; GO:0007095; GO:0031261; GO:0031297; GO:0033314; GO:0035861; GO:0043596; GO:0044732; GO:0060090; GO:0072686; GO:1902977; 
#=GS 4bu1A02/102-186     AC P32372
#=GS 4bu1A02/102-186     OS Schizosaccharomyces pombe 972h-
#=GS 4bu1A02/102-186     DE S-M checkpoint control protein rad4
#=GS 4bu1A02/102-186     DR CATH; 4bu1; A:102-185; 
#=GS 4bu1A02/102-186     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS 4bu1A02/102-186     DR GO; GO:0000790; GO:0005515; GO:0005634; GO:0005829; GO:0007095; GO:0031261; GO:0031297; GO:0033314; GO:0035861; GO:0043596; GO:0044732; GO:0060090; GO:0072686; GO:1902977; 
#=GS 4bu0A02/102-186     AC P32372
#=GS 4bu0A02/102-186     OS Schizosaccharomyces pombe 972h-
#=GS 4bu0A02/102-186     DE S-M checkpoint control protein rad4
#=GS 4bu0A02/102-186     DR CATH; 4bu0; A:102-185; 
#=GS 4bu0A02/102-186     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS 4bu0A02/102-186     DR GO; GO:0000790; GO:0005515; GO:0005634; GO:0005829; GO:0007095; GO:0031261; GO:0031297; GO:0033314; GO:0035861; GO:0043596; GO:0044732; GO:0060090; GO:0072686; GO:1902977; 
#=GS 4bmcA02/102-186     AC P32372
#=GS 4bmcA02/102-186     OS Schizosaccharomyces pombe 972h-
#=GS 4bmcA02/102-186     DE S-M checkpoint control protein rad4
#=GS 4bmcA02/102-186     DR CATH; 4bmc; A:102-186; 
#=GS 4bmcA02/102-186     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS 4bmcA02/102-186     DR GO; GO:0000790; GO:0005515; GO:0005634; GO:0005829; GO:0007095; GO:0031261; GO:0031297; GO:0033314; GO:0035861; GO:0043596; GO:0044732; GO:0060090; GO:0072686; GO:1902977; 
#=GS P32372/102-186      AC P32372
#=GS P32372/102-186      OS Schizosaccharomyces pombe 972h-
#=GS P32372/102-186      DE S-M checkpoint control protein rad4
#=GS P32372/102-186      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS P32372/102-186      DR GO; GO:0000790; GO:0005515; GO:0005634; GO:0005829; GO:0007095; GO:0031261; GO:0031297; GO:0033314; GO:0035861; GO:0043596; GO:0044732; GO:0060090; GO:0072686; GO:1902977; 
#=GS T1EES6/166-261      AC T1EES6
#=GS T1EES6/166-261      OS Helobdella robusta
#=GS T1EES6/166-261      DE Uncharacterized protein
#=GS T1EES6/166-261      DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS W4Y0R1/192-282      AC W4Y0R1
#=GS W4Y0R1/192-282      OS Strongylocentrotus purpuratus
#=GS W4Y0R1/192-282      DE Uncharacterized protein
#=GS W4Y0R1/192-282      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS Q75AR5/340-427      AC Q75AR5
#=GS Q75AR5/340-427      OS Eremothecium gossypii ATCC 10895
#=GS Q75AR5/340-427      DE ADL145Cp
#=GS Q75AR5/340-427      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS R9XGN5/342-427      AC R9XGN5
#=GS R9XGN5/342-427      OS Saccharomycetaceae sp. 'Ashbya aceri'
#=GS R9XGN5/342-427      DE AaceriADL145Cp
#=GS R9XGN5/342-427      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; 
#=GS A0A0L8VPH5/376-468  AC A0A0L8VPH5
#=GS A0A0L8VPH5/376-468  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VPH5/376-468  DE RTT107p Protein implicated in Mms22-dependent DNA repair during S phase
#=GS A0A0L8VPH5/376-468  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS H0GHJ1/376-468      AC H0GHJ1
#=GS H0GHJ1/376-468      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GHJ1/376-468      DE Rtt107p
#=GS H0GHJ1/376-468      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8RI95/376-468  AC A0A0L8RI95
#=GS A0A0L8RI95/376-468  OS Saccharomyces eubayanus
#=GS A0A0L8RI95/376-468  DE RTT107-like protein
#=GS A0A0L8RI95/376-468  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; 
#=GS N1P2D3/376-468      AC N1P2D3
#=GS N1P2D3/376-468      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P2D3/376-468      DE Rtt107p
#=GS N1P2D3/376-468      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8Z9V1/376-468      AC C8Z9V1
#=GS C8Z9V1/376-468      OS Saccharomyces cerevisiae EC1118
#=GS C8Z9V1/376-468      DE Rtt107p
#=GS C8Z9V1/376-468      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LSR8/376-468      AC B3LSR8
#=GS B3LSR8/376-468      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LSR8/376-468      DE Regulator of Ty1 transposition protein 107
#=GS B3LSR8/376-468      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B5VK83/376-468      AC B5VK83
#=GS B5VK83/376-468      OS Saccharomyces cerevisiae AWRI1631
#=GS B5VK83/376-468      DE YHR154Wp-like protein
#=GS B5VK83/376-468      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZT62/376-468      AC A6ZT62
#=GS A6ZT62/376-468      OS Saccharomyces cerevisiae YJM789
#=GS A6ZT62/376-468      DE Regulator of Ty1 transposition
#=GS A6ZT62/376-468      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WFM7/376-468      AC G2WFM7
#=GS G2WFM7/376-468      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WFM7/376-468      DE K7_Rtt107p
#=GS G2WFM7/376-468      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 20
6hm3A02/102-186             LFK-CRVCLTNIGQPERSRIENYVLKHGGTFCPDLT-RDVTHLIAGTSSGRKYEYALKWKIN------VVCVEWLWQSIQRNAVLEPQYFQLD----------
P38850/376-468              TSKELTVAYTNYFGSQRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
4bu1B02/102-186             LFK-CRVCLTNIGQPERSRIENYVLKHGGTFCPDLT-RDVTHLIAGTSSGRKYEYALKWKIN------VVCVEWLWQSIQRNAVLEPQYFQLD----------
4bu1A02/102-186             LFK-CRVCLTNIGQPERSRIENYVLKHGGTFCPDLT-RDVTHLIAGTSSGRKYEYALKWKIN------VVCVEWLWQSIQRNAVLEPQYFQLD----------
4bu0A02/102-186             LFK-CRVCLTNIGQPERSRIENYVLKHGGTFCPDLT-RDVTHLIAGTSSGRKYEYALKWKIN------VVCVEWLWQSIQRNAVLEPQYFQLD----------
4bmcA02/102-186             LFK-CRVCLTNIGQPERSRIENYVLKHGGTFCPDLT-RDVTHLIAGTSSGRKYEYALKWKIN------VVCVEWLWQSIQRNAVLEPQYFQLD----------
P32372/102-186              LFK-CRVCLTNIGQPERSRIENYVLKHGGTFCPDLT-RDVTHLIAGTSSGRKYEYALKWKIN------VVCVEWLWQSIQRNAVLEPQYFQLD----------
T1EES6/166-261              -FKGLSVCVSGLEHAERLKIKSLVEMHGGKCSGSLMIKECTHLIIKEPKGQKYQAAVKCNIR------TVSPQWLDDCLTAGYCIEEDMYLIQPQMKSNDDDD
W4Y0R1/192-282              AFKGCIICVTGVESSQRQDVRQRVPQSGGYYTGELKYNECTHLIVGAARGPKFEFARKWKIH------TVSINWFYDSIEAGYCLDEQLYNVLSQER------
Q75AR5/340-427              -EKELVLAFTNYLGQQRYYIQRLVDLLGGSSTTELS-RKNTHLISLFPHGKKHETALKW-----NSCIVVNHLWLEQCYKLRKKLDPNAPEFTRI--------
R9XGN5/342-427              ---ELVLAFTNYLGQQRYYIQRLVELLGGSSTTELS-RKNTHLLSLFPHGRKHETALKW-----DSCIVVNHLWLEKCYKLRKKLDPSLPEFRRI--------
A0A0L8VPH5/376-468          TSKELTVAYTNYFGSQRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
H0GHJ1/376-468              TSKELTVAYTNYFGSQRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
A0A0L8RI95/376-468          TSKELTVAYTNYFGSQRFYIQRLVEILGGFSTPELT-RKNTHLITKNTIGKKFKVAKKWSLDPQNAIIVTNHMWLELCYVTNSKLNPKDSRFQN---------
N1P2D3/376-468              TSKELTVAYTNYFGSQRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
C8Z9V1/376-468              TSKELTVAYTNYFGSHRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
B3LSR8/376-468              TSKELTVAYTNYFGSQRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
B5VK83/376-468              TSKELTVAYTNYFGSQRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
A6ZT62/376-468              TSKELTVAYTNYFGSQRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
G2WFM7/376-468              TSKELTVAYTNYFGSQRFYIQRLVEILGGLSTPELT-RKNTHLITKSTIGKKFKVAKKWSLDPQNAIIVTNHMWLEQCYMNNSKLNPKDSRFQN---------
#=GC scorecons              3472547548743456944855594349934566960754999854453959653949834411111276543983664336448565344542000000000
#=GC scorecons_70           __*___*__**____**__*___*___**____**__*__****_____*_**__*_**_________*____**_*_______*_*________________
#=GC scorecons_80           __*___*__**_____*__*___*___**_____*__*__****_____*_*___*_**_________*____**_________*__________________
#=GC scorecons_90           _________*______*__*___*___**_____*_____****_____*_*___*_**______________**_________*__________________
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