# STOCKHOLM 1.0
#=GF ID 3.40.50.1010/FF/000054
#=GF DE Flap endonuclease GEN
#=GF AC 3.40.50.1010/FF/000054
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 57.930
#=GS Q9VRJ0/1-202      AC Q9VRJ0
#=GS Q9VRJ0/1-202      OS Drosophila melanogaster
#=GS Q9VRJ0/1-202      DE Flap endonuclease GEN
#=GS Q9VRJ0/1-202      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VRJ0/1-202      DR GO; GO:0000400; GO:0000737; GO:0000738; GO:0004519; GO:0004520; GO:0005634; GO:0005737; GO:0006281; GO:0006302; GO:0008310; GO:0008311; GO:0008821; GO:0017108; GO:0035312; 
#=GS Q29FC1/1-201      AC Q29FC1
#=GS Q29FC1/1-201      OS Drosophila pseudoobscura pseudoobscura
#=GS Q29FC1/1-201      DE Flap endonuclease GEN
#=GS Q29FC1/1-201      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS Q29FC1/1-201      DR GO; GO:0000737; GO:0000738; GO:0004520; GO:0005634; GO:0008310; GO:0008311; GO:0035312; 
#=GS D6WYS6/1-196      AC D6WYS6
#=GS D6WYS6/1-196      OS Tribolium castaneum
#=GS D6WYS6/1-196      DE Flap endonuclease GEN-like Protein
#=GS D6WYS6/1-196      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS Q7QCK4/1-203      AC Q7QCK4
#=GS Q7QCK4/1-203      OS Anopheles gambiae
#=GS Q7QCK4/1-203      DE AGAP002669-PA
#=GS Q7QCK4/1-203      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS A0A0M4ECE8/1-200  AC A0A0M4ECE8
#=GS A0A0M4ECE8/1-200  OS Drosophila busckii
#=GS A0A0M4ECE8/1-200  DE Gen
#=GS A0A0M4ECE8/1-200  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Dorsilopha; Drosophila busckii; 
#=GS B4IX06/1-207      AC B4IX06
#=GS B4IX06/1-207      OS Drosophila grimshawi
#=GS B4IX06/1-207      DE GH15274
#=GS B4IX06/1-207      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; grimshawi group; grimshawi subgroup; Drosophila grimshawi; 
#=GS B4KX00/1-210      AC B4KX00
#=GS B4KX00/1-210      OS Drosophila mojavensis
#=GS B4KX00/1-210      DE Uncharacterized protein
#=GS B4KX00/1-210      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; repleta group; mulleri subgroup; Drosophila mojavensis; 
#=GS B3M3R8/1-204      AC B3M3R8
#=GS B3M3R8/1-204      OS Drosophila ananassae
#=GS B3M3R8/1-204      DE Uncharacterized protein
#=GS B3M3R8/1-204      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS B4H1J0/1-201      AC B4H1J0
#=GS B4H1J0/1-201      OS Drosophila persimilis
#=GS B4H1J0/1-201      DE GL22468
#=GS B4H1J0/1-201      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; 
#=GS A0A3B0KPR1/1-202  AC A0A3B0KPR1
#=GS A0A3B0KPR1/1-202  OS Drosophila guanche
#=GS A0A3B0KPR1/1-202  DE Blast:Alanine--tRNA ligase, mitochondrial
#=GS A0A3B0KPR1/1-202  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GS B4LFQ7/1-204      AC B4LFQ7
#=GS B4LFQ7/1-204      OS Drosophila virilis
#=GS B4LFQ7/1-204      DE Uncharacterized protein
#=GS B4LFQ7/1-204      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; virilis group; Drosophila virilis; 
#=GS B4QRI8/1-202      AC B4QRI8
#=GS B4QRI8/1-202      OS Drosophila simulans
#=GS B4QRI8/1-202      DE GD13208
#=GS B4QRI8/1-202      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS A0A1W4UTL2/1-199  AC A0A1W4UTL2
#=GS A0A1W4UTL2/1-199  OS Drosophila ficusphila
#=GS A0A1W4UTL2/1-199  DE flap endonuclease GEN
#=GS A0A1W4UTL2/1-199  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS B4HUE2/1-202      AC B4HUE2
#=GS B4HUE2/1-202      OS Drosophila sechellia
#=GS B4HUE2/1-202      DE GM13928
#=GS B4HUE2/1-202      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS B3NG99/1-202      AC B3NG99
#=GS B3NG99/1-202      OS Drosophila erecta
#=GS B3NG99/1-202      DE Uncharacterized protein
#=GS B3NG99/1-202      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS B4PIS0/1-202      AC B4PIS0
#=GS B4PIS0/1-202      OS Drosophila yakuba
#=GS B4PIS0/1-202      DE Uncharacterized protein
#=GS B4PIS0/1-202      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GF SQ 16
Q9VRJ0/1-202              MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPE-------CT---QSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
Q29FC1/1-201              MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKDAAT-------GT----QTAAKVDKGRTRFNHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
D6WYS6/1-196              MGIKDLWTLLAPFGERKPLYELQGKTVAIDLSCWVCESQNVTEYTVQPRMYLRNLYFRTCYLLLMDVNVVFVLEGRAPELKYKTIAARNALQFKGAKPKNGAK-------------------TKDRSRFNHTLKRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFAYGARVVYRNFSISQQGNQAAKGGSVDVYDISVAN-------ER
Q7QCK4/1-203              M-------------ERKPLFELSNKVVAIDLSGWVCESLNVVDYFVHPRFYLRNLFFRTCYLLQTGITPVFVLEGTAPPLKYGVIVKRNQMQFRGARPKKIANCDKATVSSTQTTEKPAKPTEQKRNRFHHVLKQCEELLSAMGLVCVQAPGEAEALCAYLNRDNLIYGVISQDSDCFAYGAVRVFRNFCASQN------GGSVEIYDLTRVNASVLQLGQE
A0A0M4ECE8/1-200          MGVKELWTVLTPHADRKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLDGVAPKLKSQVIAKRNELQFRGVRPKDKDKD------AT---GTVTNKSDKGRTRFNHVLKQCESLLLCMGIQCVQAPGEAEAYCAFLNKEGLVDGVISQDSDCFAYGAQRVYRNFSVSTQGTQAAAGGAVDIYDM-------------
B4IX06/1-207              MGVKELWTILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVRPKDKDKD-AQ-APPK----QAALNGDKGRTRFNNVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKYGLVDGVISQDSDCFAYGARRVYRNFSVSTQGAQAAAGGAVDIYDMQEIC---------
B4KX00/1-210              MGVKELWSILTPYADRKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGARPKDKDKD-KDAVGPT----QAVAKSDKGRTRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMQEIC-------NH
B3M3R8/1-204              MGVKELWTVLTPHCERKPISELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKEATA-----GSQT---QSQAPKAEKGRTRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
B4H1J0/1-201              MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVITKRNELQFRGVRPKDAAT-------GT----QTAAKVDKGRTRFNHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
A0A3B0KPR1/1-202          MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKEAAT-------ST---QQAAAKGDKGRTRFNHVLKQCETLLLSMGIQCVQGPGEAEAYGAFLNKHGLVDGVISQDSDCFAYGAIRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
B4LFQ7/1-204              MGVKELWSILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVRPKDKDA-----PAPT----QAAAKKDKGRTRFNHVLKQCENLLLAMGIQCVQGPGEAEAYCAYLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMQTIC---------
B4QRI8/1-202              MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPE-------CT---QSQAPKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
A0A1W4UTL2/1-199          MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPE-------CT---QTQAPKGDKGRTRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGALRVYRNFSVSTQGAQAAAGGAVDIYDM-------------
B4HUE2/1-202              MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFRGVKPKNSPE-------CT---QSQAPKADKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
B3NG99/1-202              MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPE-------CS---QSQAPKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAIRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
B4PIS0/1-202              MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPE-------CT---QSQAPKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAIRVYRNFSVSTQGAQAAAGGAVDIYDMREI----------
#=GC scorecons            965656634656438999649957959999967999997997897979957979989999996555777999989599599457967995799896799534400000002500013252426759599787997994795479659976799999579599647976989999999999994698999769576466649969789963340000000000
#=GC scorecons_70         *_____________*****_**_**_***********************_*************___*********_**_**__******_*****_***________________________*_*_**********_**__***_**********_**_***_******************_*********_*______*********_____________
#=GC scorecons_80         *_____________****__**__*_*****_******_*****_****_************____*********_**_**__**_***_*****__**________________________*_*_**********_**__**__***__*****_**_**___**_**************__******_*________**_*****______________
#=GC scorecons_90         *_____________****__**__*_*****__*****_**__*_*_**__*_*********_______******_**_**___*__**__**_*__**__________________________*_**_*_**_**__*___*__**___*****__*_**___*__*_************__*_***__*________**_*__**______________
//