# STOCKHOLM 1.0
#=GF ID 3.40.50.1010/FF/000045
#=GF DE Transcriptional protein swt1
#=GF AC 3.40.50.1010/FF/000045
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 89.661
#=GS Q12104/127-280      AC Q12104
#=GS Q12104/127-280      OS Saccharomyces cerevisiae S288C
#=GS Q12104/127-280      DE Transcriptional protein SWT1
#=GS Q12104/127-280      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS Q12104/127-280      DR GO; GO:0004521; GO:0005634; GO:0005737; GO:0006368; GO:0071032; 
#=GS Q9P7J1/70-210       AC Q9P7J1
#=GS Q9P7J1/70-210       OS Schizosaccharomyces pombe 972h-
#=GS Q9P7J1/70-210       DE Transcriptional protein swt1
#=GS Q9P7J1/70-210       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS Q9P7J1/70-210       DR GO; GO:0004521; GO:0005634; GO:0005829; GO:0071032; 
#=GS E9H392/140-292      AC E9H392
#=GS E9H392/140-292      OS Daphnia pulex
#=GS E9H392/140-292      DE Uncharacterized protein
#=GS E9H392/140-292      DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS A0A139WKQ7/177-324  AC A0A139WKQ7
#=GS A0A139WKQ7/177-324  OS Tribolium castaneum
#=GS A0A139WKQ7/177-324  DE Uncharacterized protein
#=GS A0A139WKQ7/177-324  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS Q6CAS9/113-272      AC Q6CAS9
#=GS Q6CAS9/113-272      OS Yarrowia lipolytica CLIB122
#=GS Q6CAS9/113-272      DE YALI0D00253p
#=GS Q6CAS9/113-272      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia; Yarrowia lipolytica; 
#=GS G1UA30/103-253      AC G1UA30
#=GS G1UA30/103-253      OS Candida albicans
#=GS G1UA30/103-253      DE Uncharacterized protein CaJ7.0074
#=GS G1UA30/103-253      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GS Q74ZD7/114-268      AC Q74ZD7
#=GS Q74ZD7/114-268      OS Eremothecium gossypii ATCC 10895
#=GS Q74ZD7/114-268      DE AGR262Wp
#=GS Q74ZD7/114-268      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS R9XDB1/115-266      AC R9XDB1
#=GS R9XDB1/115-266      OS Saccharomycetaceae sp. 'Ashbya aceri'
#=GS R9XDB1/115-266      DE AaceriAGR262Wp
#=GS R9XDB1/115-266      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; 
#=GS B9WJL1/103-254      AC B9WJL1
#=GS B9WJL1/103-254      OS Candida dubliniensis CD36
#=GS B9WJL1/103-254      DE Transcriptional activator, putative
#=GS B9WJL1/103-254      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida dubliniensis; 
#=GS H0GNJ3/127-280      AC H0GNJ3
#=GS H0GNJ3/127-280      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GNJ3/127-280      DE Swt1p
#=GS H0GNJ3/127-280      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8VH91/127-280  AC A0A0L8VH91
#=GS A0A0L8VH91/127-280  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VH91/127-280  DE SWT1p RNA endoribonuclease involved in perinuclear mRNP quality control
#=GS A0A0L8VH91/127-280  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS A0A1D8NCK6/113-272  AC A0A1D8NCK6
#=GS A0A1D8NCK6/113-272  OS Yarrowia lipolytica
#=GS A0A1D8NCK6/113-272  DE PIN domain-domain-containing protein
#=GS A0A1D8NCK6/113-272  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia; Yarrowia lipolytica; 
#=GS A0A1D8PQL9/103-253  AC A0A1D8PQL9
#=GS A0A1D8PQL9/103-253  OS Candida albicans SC5314
#=GS A0A1D8PQL9/103-253  DE mRNA-processing endoribonuclease
#=GS A0A1D8PQL9/103-253  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GS C4YTC9/103-253      AC C4YTC9
#=GS C4YTC9/103-253      OS Candida albicans WO-1
#=GS C4YTC9/103-253      DE Uncharacterized protein
#=GS C4YTC9/103-253      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GS A6ZP11/127-280      AC A6ZP11
#=GS A6ZP11/127-280      OS Saccharomyces cerevisiae YJM789
#=GS A6ZP11/127-280      DE Conserved protein
#=GS A6ZP11/127-280      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1NWP8/127-280      AC N1NWP8
#=GS N1NWP8/127-280      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1NWP8/127-280      DE Swt1p
#=GS N1NWP8/127-280      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8ZGS7/127-280      AC C8ZGS7
#=GS C8ZGS7/127-280      OS Saccharomyces cerevisiae EC1118
#=GS C8ZGS7/127-280      DE Swt1p
#=GS C8ZGS7/127-280      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GN58/127-280      AC C7GN58
#=GS C7GN58/127-280      OS Saccharomyces cerevisiae JAY291
#=GS C7GN58/127-280      DE Swt1p
#=GS C7GN58/127-280      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LJJ9/127-280      AC B3LJJ9
#=GS B3LJJ9/127-280      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LJJ9/127-280      DE Uncharacterized protein
#=GS B3LJJ9/127-280      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WN39/127-280      AC G2WN39
#=GS G2WN39/127-280      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WN39/127-280      DE K7_Swt1p
#=GS G2WN39/127-280      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 20
Q12104/127-280              ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
Q9P7J1/70-210               ------GLFVLDTNFLLSHLSLCQNLIEFLTARCP--RLVVVLPWTVLQELDGLKSE------------------SSSTCGYLARQAHNFLLQCFRSNVSSLRGQKVHE-----HCSSTEK---GDDAILDCCIYYQEEK-LIPAVLLSDDKNLSIKAAVHHIQSLSFSKGLEAAS
E9H392/140-292              SITSAALHVVIDTNIFLSHLPIVQMLVEKEEFCSK-VQILV--PWMVLQELDFMKTN----------------RENKVKLEIIARKAGTFIFEQISKKNAFFRIQTLEEFKRCINLLPDEN---ADDKILQWCLYLKKEI-GSDITLLSNDILFCAKASANGIQPFQSDNFIQKLP
A0A139WKQ7/177-324          --SSCQFYIVVDTNIFLSELNIIANIVTLAVKGPREPVIFI--PWIVTEELDFIKGD-----------------SNKRSLRQKAQDAIKLIEKTMSSKHNRMKGQTLME-----ANEQESVGANQDNKIIACCMQVLEKY--ENMVLLTNDINLKNKAHFNKIPVCSSKEIMFKIQ
Q6CAS9/113-272              ---ENRLLLIIDTNFAISHLSLLKELAALHEQYGH--ILIV--PWAVIKELDGLKNSGKMEYRYQTGAVSTGDIDLDLSLGQRARMANAWIFEQLGARSQALFGQKVSE-----RLGESTR---GDDAILDCCRYFQHKA-DAFIVILSDDKNLCMKALIHEIMTVSYQERMTAET
G1UA30/103-253              ---GNISFLVLDTNFLISHLNIVDTLKNIASEYGL--KLII--PVYVVQELDGLKNSNRL---HN----NSNGKFTGETVSQLAIWANRWIYQALADSSAVVKGQKLSQ-----RISKDLV---KDDAIFDCCLYFKKTYPQSLVILLSNDKNLCAKALSNDVLTVSFRENMS---
Q74ZD7/114-268              Q-DLHNIALVVDTNYVLSHLDILEELRVLAPKYSY--RIVV--PKTVLQELDGLKNSNKV---DG----DYSSCQRKEPVSVLARRANNWLYSNLANLDSYLIVQKMRE-----KLDLNSA---KDDAILDCCLYYGEVH-KYFVVLLSNDKNLCMKALAEEVPTVSYRDRMTAQL
R9XDB1/115-266              --ELHNIALVVDTNYVLSHLDILEELRVLAPKYGY--RIVV--PKTVLQELDGLKNSNKV---DG----D-SSYQRKEPVSVLARRANNWLYSNLANLDSYLTVQKMRE-----KLDHNSI---KDDAILDCCLYYGEVQ-KYFVILLSNDKNLCMKALAEEVPTVSYREGMTAQ-
B9WJL1/103-254              ---GNISFLVLDTNFLISHLNIVDTLKNIASDYGL--KLII--PVYVVQELNGLKNSDRL---HN----SSDGKFTGETVSQLATWANRWIYHALAESSAVVKGQKLSQ-----RISKDLV---KDDAIFDCCLYFKQTYPRSLVILLSNDKNLCAKALSNDVLTVSFREDMSA--
H0GNJ3/127-280              ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
A0A0L8VH91/127-280          ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
A0A1D8NCK6/113-272          ---ENRLLLIIDTNFAISHLSLLKELAALHEQYGH--ILIV--PWAVIKELDGLKNSGKMEYRYQTGAVSTGDIDLDLSLGQRARMANAWIFEQLGARSQALFGQKVSE-----RLGESTR---GDDAILDCCRYFQHKA-DAFIVILSDDKNLCMKALIHEIMTVSYQERMTAET
A0A1D8PQL9/103-253          ---GNISFLVLDTNFLISHLNIVDTLKNIASEYGL--KLII--PVYVVQELDGLKNSNRL---HN----NSNGKFTGETVSQLAIWANRWIYQALADSSAVVKGQKLSQ-----RISKDLV---KDDAIFDCCLYFKKTYPQSLVILLSNDKNLCAKALSNDVLTVSFRENMS---
C4YTC9/103-253              ---GNISFLVLDTNFLISHLNIVDTLKNIASEYGL--KLII--PVYVVQELDGLKNSNRL---HN----NSNGKFTGETVSQLAIWANRWIYQALADSSAVVKGQKLSQ-----RISKDLV---KDDAIFDCCLYFKKTYPQSLVILLSNDKNLCAKALSNDVLTVSFRENMS---
A6ZP11/127-280              ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
N1NWP8/127-280              ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
C8ZGS7/127-280              ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
C7GN58/127-280              ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
B3LJJ9/127-280              ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
G2WN39/127-280              ---TLKTAFVVDTNFIISHLNTLEKLRSLSSTYHH--LIIV--PTTVIQELDGLKKSPDIARDND----DTTNQEQDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQ-----SLNPGSL---KDDSILDCCLYFKEIL-NCFVILLSNDKNLCTKALTEDILTVSFRKNMDA--
#=GC scorecons              00033333586999646989555548435443644003667009349579986794622311122000032222334355535953664675446543453636976460000045434430005985967896765533033466798796787499645574667655473400
#=GC scorecons_70           _________*_****_****_____*____________***__*__*_*******_*__________________________*__*___*___*________****_*________________**_*****_**________***********_**____*_***____*____
#=GC scorecons_80           _________*_***___***_____*______________*__*__*_****_**____________________________*______*_____________*____________________**_*__**_*___________*****_**__**____*___*____*____
#=GC scorecons_90           _________*_***___*_*_____*_________________*__*__***__*____________________________*____________________*____________________**_*__**______________**_*__*__**__________________
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