# STOCKHOLM 1.0
#=GF ID 3.40.220.10/FF/000019
#=GF DE Replicase polyprotein 1a
#=GF AC 3.40.220.10/FF/000019
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 16.095
#=GS P0C6X8/1257-1423  AC P0C6X8
#=GS P0C6X8/1257-1423  OS Murine hepatitis virus strain 2
#=GS P0C6X8/1257-1423  DE Replicase polyprotein 1ab
#=GS P0C6X8/1257-1423  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6X8/1257-1423  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6V1/1309-1475  AC P0C6V1
#=GS P0C6V1/1309-1475  OS Murine hepatitis virus strain JHM
#=GS P0C6V1/1309-1475  DE Replicase polyprotein 1a
#=GS P0C6V1/1309-1475  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6V1/1309-1475  DR GO; GO:0004197; GO:0097264; 
#=GS P0C6V1/1309-1475  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS P0C6V0/1310-1476  AC P0C6V0
#=GS P0C6V0/1310-1476  OS Murine hepatitis virus strain A59
#=GS P0C6V0/1310-1476  DE Replicase polyprotein 1a
#=GS P0C6V0/1310-1476  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6V0/1310-1476  DR GO; GO:0097264; 
#=GS P0C6V0/1310-1476  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS P0C6Y0/1309-1475  AC P0C6Y0
#=GS P0C6Y0/1309-1475  OS Murine hepatitis virus strain JHM
#=GS P0C6Y0/1309-1475  DE Replicase polyprotein 1ab
#=GS P0C6Y0/1309-1475  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6Y0/1309-1475  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6X9/1310-1476  AC P0C6X9
#=GS P0C6X9/1310-1476  OS Murine hepatitis virus strain A59
#=GS P0C6X9/1310-1476  DE Replicase polyprotein 1ab
#=GS P0C6X9/1310-1476  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6X9/1310-1476  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6U9/1257-1423  AC P0C6U9
#=GS P0C6U9/1257-1423  OS Murine hepatitis virus strain 2
#=GS P0C6U9/1257-1423  DE Replicase polyprotein 1a
#=GS P0C6U9/1257-1423  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6U9/1257-1423  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS I7AWB5/1309-1475  AC I7AWB5
#=GS I7AWB5/1309-1475  OS Murine coronavirus
#=GS I7AWB5/1309-1475  DE Polyprotein ORF1ab
#=GS I7AWB5/1309-1475  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C6GHR8/1309-1474  AC C6GHR8
#=GS C6GHR8/1309-1474  OS Rat coronavirus Parker
#=GS C6GHR8/1309-1474  DE Orf1ab polyprotein
#=GS C6GHR8/1309-1474  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C6GHR9/1309-1474  AC C6GHR9
#=GS C6GHR9/1309-1474  OS Rat coronavirus Parker
#=GS C6GHR9/1309-1474  DE Orf1a polyprotein
#=GS C6GHR9/1309-1474  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS I7B5F2/1309-1475  AC I7B5F2
#=GS I7B5F2/1309-1475  OS Murine coronavirus
#=GS I7B5F2/1309-1475  DE Polyprotein ORF1a
#=GS I7B5F2/1309-1475  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q83354/730-896    AC Q83354
#=GS Q83354/730-896    OS Murine hepatitis virus
#=GS Q83354/730-896    DE Autoproteolytic cleavage domain
#=GS Q83354/730-896    DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q9J3E9/1307-1473  AC Q9J3E9
#=GS Q9J3E9/1307-1473  OS Murine hepatitis virus
#=GS Q9J3E9/1307-1473  DE RNA-directed RNA polymerase
#=GS Q9J3E9/1307-1473  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYS8/1310-1476  AC C0KYS8
#=GS C0KYS8/1310-1476  OS Murine coronavirus RA59/SJHM
#=GS C0KYS8/1310-1476  DE ORF1a polyprotein
#=GS C0KYS8/1310-1476  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYT7/1310-1476  AC C0KYT7
#=GS C0KYT7/1310-1476  OS Murine coronavirus repA59/RJHM
#=GS C0KYT7/1310-1476  DE ORF1a polyprotein
#=GS C0KYT7/1310-1476  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYQ8/1310-1476  AC C0KYQ8
#=GS C0KYQ8/1310-1476  OS Murine coronavirus RA59/R13
#=GS C0KYQ8/1310-1476  DE ORF1a polyprotein
#=GS C0KYQ8/1310-1476  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GF SQ 15
P0C6X8/1257-1423          FEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKNQGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISAGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVIEK
P0C6V1/1309-1475          FEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
P0C6V0/1310-1476          FELAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
P0C6Y0/1309-1475          FEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
P0C6X9/1310-1476          FELAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
P0C6U9/1257-1423          FEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKNQGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISAGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVIEK
I7AWB5/1309-1475          FEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
C6GHR8/1309-1474          -ETAQLYGSCITPNVCFVKGDVIKVARLVEAEVIVNPANGRMAHGAGVAGAIAKAAGKFFIKETADMVKNQGVCLVGECYESAGGKLCKKVLNIVGPDARGQGRQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNKDDFDVIEK
C6GHR9/1309-1474          -ETAQLYGSCITPNVCFVKGDVIKVARLVEAEVIVNPANGRMAHGAGVAGAIAKAAGKFFIKETADMVKNQGVCLVGECYESAGGKLCKKVLNIVGPDARGQGRQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNKDDFDVIEK
I7B5F2/1309-1475          FEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
Q83354/730-896            FEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKAQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
Q9J3E9/1307-1473          FELAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
C0KYS8/1310-1476          FELAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
C0KYT7/1310-1476          FELAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
C0KYQ8/1310-1476          FELAQLYGSCITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISAGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEK
#=GC scorecons            59599999999999999999999995949599999999999999999999999659955996996999969999699699996997999699999999999796799979999999999997999999999999999999999979999999999999699999999
#=GC scorecons_70         _*_**********************_*_*_************************_**__**********_*********************************_***************************************************************
#=GC scorecons_80         _*_**********************_*_*_***********************__**__**_**_****_****_**_****_******_*************_******************************************************_********
#=GC scorecons_90         _*_**********************_*_*_***********************__**__**_**_****_****_**_****_**_***_***********_*__***_************_**********************_*************_********
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