# STOCKHOLM 1.0 #=GF ID 3.40.1170.60/FF/000014 #=GF DE Related to DNA polymerase kappa #=GF AC 3.40.1170.60/FF/000014 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 80.276 #=GS A8BDY9/98-152 AC A8BDY9 #=GS A8BDY9/98-152 OS Giardia lamblia ATCC 50803 #=GS A8BDY9/98-152 DE DINP protein, human muc B family #=GS A8BDY9/98-152 DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; #=GS A0A0D1E2K8/165-213 AC A0A0D1E2K8 #=GS A0A0D1E2K8/165-213 OS Ustilago maydis 521 #=GS A0A0D1E2K8/165-213 DE Uncharacterized protein #=GS A0A0D1E2K8/165-213 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; #=GS A2FMN4/108-159 AC A2FMN4 #=GS A2FMN4/108-159 OS Trichomonas vaginalis #=GS A2FMN4/108-159 DE ImpB/MucB/SamB family protein #=GS A2FMN4/108-159 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS E6R5U6/133-183 AC E6R5U6 #=GS E6R5U6/133-183 OS Cryptococcus gattii WM276 #=GS E6R5U6/133-183 DE Uncharacterized protein #=GS E6R5U6/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; #=GS A0A317XW85/174-222 AC A0A317XW85 #=GS A0A317XW85/174-222 OS Testicularia cyperi #=GS A0A317XW85/174-222 DE DNA/RNA polymerase #=GS A0A317XW85/174-222 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Anthracoideaceae; Testicularia; Testicularia cyperi; #=GS M9LWS8/174-222 AC M9LWS8 #=GS M9LWS8/174-222 OS Moesziomyces antarcticus T-34 #=GS M9LWS8/174-222 DE Predicted DNA damage inducible protein #=GS M9LWS8/174-222 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces; Moesziomyces antarcticus; #=GS E6ZYN0/165-213 AC E6ZYN0 #=GS E6ZYN0/165-213 OS Sporisorium reilianum SRZ2 #=GS E6ZYN0/165-213 DE Related to DNA polymerase kappa #=GS E6ZYN0/165-213 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium reilianum; #=GS R9P340/166-214 AC R9P340 #=GS R9P340/166-214 OS Pseudozyma hubeiensis SY62 #=GS R9P340/166-214 DE Uncharacterized protein #=GS R9P340/166-214 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Pseudozyma; Pseudozyma hubeiensis; #=GS V5ETE6/169-216 AC V5ETE6 #=GS V5ETE6/169-216 OS Kalmanozyma brasiliensis GHG001 #=GS V5ETE6/169-216 DE Uncharacterized protein #=GS V5ETE6/169-216 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Kalmanozyma; Kalmanozyma brasiliensis; #=GS A0A077R6Z8/170-218 AC A0A077R6Z8 #=GS A0A077R6Z8/170-218 OS Melanopsichium pennsylvanicum 4 #=GS A0A077R6Z8/170-218 DE Related to DNA polymerase kappa #=GS A0A077R6Z8/170-218 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Melanopsichium; Melanopsichium pennsylvanicum; #=GS Q5K8U2/133-183 AC Q5K8U2 #=GS Q5K8U2/133-183 OS Cryptococcus neoformans var. neoformans JEC21 #=GS Q5K8U2/133-183 DE Uncharacterized protein #=GS Q5K8U2/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; #=GS I2FRP9/170-218 AC I2FRP9 #=GS I2FRP9/170-218 OS Ustilago hordei Uh4857-4 #=GS I2FRP9/170-218 DE Related to DNA polymerase kappa #=GS I2FRP9/170-218 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago hordei; #=GS W3VJB1/174-222 AC W3VJB1 #=GS W3VJB1/174-222 OS Moesziomyces aphidis DSM 70725 #=GS W3VJB1/174-222 DE Uncharacterized protein #=GS W3VJB1/174-222 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces; Moesziomyces aphidis; #=GS A0A1K0G2Y7/170-218 AC A0A1K0G2Y7 #=GS A0A1K0G2Y7/170-218 OS Ustilago bromivora #=GS A0A1K0G2Y7/170-218 DE Related to DNA polymerase kappa #=GS A0A1K0G2Y7/170-218 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago bromivora; #=GS A0A0D0YV03/133-183 AC A0A0D0YV03 #=GS A0A0D0YV03/133-183 OS Cryptococcus gattii VGIV IND107 #=GS A0A0D0YV03/133-183 DE Unplaced genomic scaffold supercont2.12, whole genome shotgun sequence #=GS A0A0D0YV03/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIV; #=GS A0A0D0VMI4/133-183 AC A0A0D0VMI4 #=GS A0A0D0VMI4/133-183 OS Cryptococcus gattii CA1280 #=GS A0A0D0VMI4/133-183 DE Unplaced genomic scaffold supercont1.12, whole genome shotgun sequence #=GS A0A0D0VMI4/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIII; #=GS A0A095DCU5/133-183 AC A0A095DCU5 #=GS A0A095DCU5/133-183 OS Cryptococcus gattii VGII R265 #=GS A0A095DCU5/133-183 DE DNA polymerase kappa subunit #=GS A0A095DCU5/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; #=GS J9VJ32/133-183 AC J9VJ32 #=GS J9VJ32/133-183 OS Cryptococcus neoformans var. grubii H99 #=GS J9VJ32/133-183 DE DNA polymerase kappa subunit #=GS J9VJ32/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; #=GS E1F7J6/98-152 AC E1F7J6 #=GS E1F7J6/98-152 OS Giardia lamblia P15 #=GS E1F7J6/98-152 DE DNA polymerase kappa-related protein #=GS E1F7J6/98-152 DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; #=GS V6TLM1/98-152 AC V6TLM1 #=GS V6TLM1/98-152 OS Giardia intestinalis #=GS V6TLM1/98-152 DE DNA polymerase IV #=GS V6TLM1/98-152 DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; #=GS A2DLM9/105-156 AC A2DLM9 #=GS A2DLM9/105-156 OS Trichomonas vaginalis #=GS A2DLM9/105-156 DE ImpB/MucB/SamB family protein #=GS A2DLM9/105-156 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS A0A0D0X5K2/133-183 AC A0A0D0X5K2 #=GS A0A0D0X5K2/133-183 OS Cryptococcus gattii EJB2 #=GS A0A0D0X5K2/133-183 DE Unplaced genomic scaffold supercont1.71, whole genome shotgun sequence #=GS A0A0D0X5K2/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; #=GS A0A0D0UXH3/133-183 AC A0A0D0UXH3 #=GS A0A0D0UXH3/133-183 OS Cryptococcus gattii VGII Ram5 #=GS A0A0D0UXH3/133-183 DE Unplaced genomic scaffold supercont1.13, whole genome shotgun sequence #=GS A0A0D0UXH3/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; #=GS A0A226BJH7/133-183 AC A0A226BJH7 #=GS A0A226BJH7/133-183 OS Cryptococcus neoformans var. grubii Bt85 #=GS A0A226BJH7/133-183 DE DNA polymerase kappa subunit #=GS A0A226BJH7/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; #=GS A0A225Z9T5/133-183 AC A0A225Z9T5 #=GS A0A225Z9T5/133-183 OS Cryptococcus neoformans var. grubii c45 #=GS A0A225Z9T5/133-183 DE DNA polymerase kappa subunit #=GS A0A225Z9T5/133-183 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; #=GS A0A2N8UBV3/165-213 AC A0A2N8UBV3 #=GS A0A2N8UBV3/165-213 OS Sporisorium reilianum f. sp. reilianum #=GS A0A2N8UBV3/165-213 DE Related to DNA polymerase kappa #=GS A0A2N8UBV3/165-213 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium reilianum; #=GF SQ 26 A8BDY9/98-152 FYASIEERDNPSLRGKPVIITGG---SIVCTSNYAARK-YGVRSAMPTHVAKALCKDVI--- A0A0D1E2K8/165-213 ---------DPSLKGKCFGVGS----GVLVTASYEARRGYGVRSGMAVFVAKALCPHLIVVK A2FMN4/108-159 ---------DPSLKGTAFAVGGSVKRGIISTSSYEARK-YGVRSGMAVFVAMKLCPHLNVVH E6R5U6/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-FGVRSAMASFIAKKLCPHII--- A0A317XW85/174-222 ---------DPSLKGKCFGVGS----GVLVTASYEARRGYGVRSGMATFVAKALCPHLIVVK M9LWS8/174-222 ---------DPSLKGKCFGVGS----GVLVTASYEARRGYGVRSGMAVFVAKALCPHLIVVK E6ZYN0/165-213 ---------DPSLKGKCFGVGS----GVLVTASYQARRGYGVRSGMAVFVAKALCPHLIVVK R9P340/166-214 ---------DPSLKGKCFGVGS----GVLVTASYEARRGYGVRSGMAVFVAKALCPHLIVVK V5ETE6/169-216 ---------DPSLKGKCFGVGS----GVLVTASYEARK-YGARSGMATFVAKALCPHLIVVK A0A077R6Z8/170-218 ---------DPSLKGKCFGVGS----GVLVTASYEARRGYGVRSGMATFVAKALCPHLIVVK Q5K8U2/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-FGVRSAMAGFIAKKLCPHII--- I2FRP9/170-218 ---------DPSLKGKCFGVGS----GVLVTASYEARRGYGVRSGMATFVAKALCPHLIVVK W3VJB1/174-222 ---------DPSLKGKCFGVGS----GVLVTASYEARRGYGVRSGMAVFVAKALCPHLIVVK A0A1K0G2Y7/170-218 ---------DPSLKGKCFGVGS----GVLVTASYEARRGYGVRSGMATFVAKALCPHLIVVK A0A0D0YV03/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-FGVRSAMASFIAKKLCPHII--- A0A0D0VMI4/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-FGVRSAMASFIAKKLCPHII--- A0A095DCU5/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-YGVRSAMASFIAKKLCPHII--- J9VJ32/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-FGVRSAMAGFIAKKLCPHII--- E1F7J6/98-152 FYASIEERDNPRLRGKPVIITGG---SIVCTSNYAARK-YGVRSAMPTHVAKALCKDVI--- V6TLM1/98-152 FYASIEERDNPSLRGKPVIITGG---SIVCTSNYAARK-YGVRSAMPTHVAKALCKDVI--- A2DLM9/105-156 ---------DPSLVGTAFAVGGEIKHGVLSTTSYEARK-FGVRSGMAVFIALQLCPHLKIVE A0A0D0X5K2/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-FGVRSAMASFIAKKLCPHII--- A0A0D0UXH3/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-YGVRSAMASFIAKKLCPHII--- A0A226BJH7/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-FGVRSAMAGFIAKKLCPHII--- A0A225Z9T5/133-183 ---SVEVQRDPSLKGKAFGVGK----GVLCTASYEARK-FGVRSAMAGFIAKKLCPHII--- A0A2N8UBV3/165-213 ---------DPSLKGKCFGVGS----GVLVTASYQARRGYGVRSGMAVFVAKALCPHLIVVK #=GC scorecons 00021211179897974757740000777496796997079899697477975996767111 #=GC scorecons_70 _________*******_*_**_____***_********_*****_**_****_****_*___ #=GC scorecons_80 _________****_**___*______**__*_**_***_*****_**__***_**___*___ #=GC scorecons_90 __________***_*_______________*__*_**___****_*____*__**_______ //