# STOCKHOLM 1.0 #=GF ID 3.30.70.940/FF/000010 #=GF DE Protein RNA-directed DNA methylation 3 #=GF AC 3.30.70.940/FF/000010 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 84.105 #=GS F4JW79/127-232 AC F4JW79 #=GS F4JW79/127-232 OS Arabidopsis thaliana #=GS F4JW79/127-232 DE Protein RNA-directed DNA methylation 3 #=GS F4JW79/127-232 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS F4JW79/127-232 DR GO; GO:0003682; GO:0003723; GO:0005515; GO:0005654; GO:0006306; GO:0006342; GO:0016458; GO:0030422; GO:0080188; #=GS A0A1P8BFP7/127-232 AC A0A1P8BFP7 #=GS A0A1P8BFP7/127-232 OS Arabidopsis thaliana #=GS A0A1P8BFP7/127-232 DE Kow domain-containing transcription factor 1 #=GS A0A1P8BFP7/127-232 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A178UGI6/127-232 AC A0A178UGI6 #=GS A0A178UGI6/127-232 OS Arabidopsis thaliana #=GS A0A178UGI6/127-232 DE SPT5L #=GS A0A178UGI6/127-232 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS F6HNC9/61-166 AC F6HNC9 #=GS F6HNC9/61-166 OS Vitis vinifera #=GS F6HNC9/61-166 DE Uncharacterized protein #=GS F6HNC9/61-166 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS A0D4Q4/121-224 AC A0D4Q4 #=GS A0D4Q4/121-224 OS Paramecium tetraurelia #=GS A0D4Q4/121-224 DE Uncharacterized protein #=GS A0D4Q4/121-224 DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; #=GS A0A1D6FT60/4-103 AC A0A1D6FT60 #=GS A0A1D6FT60/4-103 OS Zea mays #=GS A0A1D6FT60/4-103 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6FT60/4-103 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS D7LXH3/127-232 AC D7LXH3 #=GS D7LXH3/127-232 OS Arabidopsis lyrata subsp. lyrata #=GS D7LXH3/127-232 DE Uncharacterized protein #=GS D7LXH3/127-232 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A368QGJ9/156-256 AC A0A368QGJ9 #=GS A0A368QGJ9/156-256 OS Setaria italica #=GS A0A368QGJ9/156-256 DE Uncharacterized protein #=GS A0A368QGJ9/156-256 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GS A0A1Z5R3E8/156-255 AC A0A1Z5R3E8 #=GS A0A1Z5R3E8/156-255 OS Sorghum bicolor #=GS A0A1Z5R3E8/156-255 DE Uncharacterized protein #=GS A0A1Z5R3E8/156-255 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS A0A3L6T3M6/149-252 AC A0A3L6T3M6 #=GS A0A3L6T3M6/149-252 OS Panicum miliaceum #=GS A0A3L6T3M6/149-252 DE Uncharacterized protein #=GS A0A3L6T3M6/149-252 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; #=GS A0A1D6FT45/153-252 AC A0A1D6FT45 #=GS A0A1D6FT45/153-252 OS Zea mays #=GS A0A1D6FT45/153-252 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6FT45/153-252 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6FT54/4-103 AC A0A1D6FT54 #=GS A0A1D6FT54/4-103 OS Zea mays #=GS A0A1D6FT54/4-103 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6FT54/4-103 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6M7N6/154-256 AC A0A1D6M7N6 #=GS A0A1D6M7N6/154-256 OS Zea mays #=GS A0A1D6M7N6/154-256 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6M7N6/154-256 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6M7N3/154-253 AC A0A1D6M7N3 #=GS A0A1D6M7N3/154-253 OS Zea mays #=GS A0A1D6M7N3/154-253 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6M7N3/154-253 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6M7N4/154-256 AC A0A1D6M7N4 #=GS A0A1D6M7N4/154-256 OS Zea mays #=GS A0A1D6M7N4/154-256 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6M7N4/154-256 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6FT44/153-252 AC A0A1D6FT44 #=GS A0A1D6FT44/153-252 OS Zea mays #=GS A0A1D6FT44/153-252 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6FT44/153-252 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6FT64/153-252 AC A0A1D6FT64 #=GS A0A1D6FT64/153-252 OS Zea mays #=GS A0A1D6FT64/153-252 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6FT64/153-252 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6FT50/153-252 AC A0A1D6FT50 #=GS A0A1D6FT50/153-252 OS Zea mays #=GS A0A1D6FT50/153-252 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6FT50/153-252 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6M7P9/4-103 AC A0A1D6M7P9 #=GS A0A1D6M7P9/4-103 OS Zea mays #=GS A0A1D6M7P9/4-103 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6M7P9/4-103 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6M7N5/154-253 AC A0A1D6M7N5 #=GS A0A1D6M7N5/154-253 OS Zea mays #=GS A0A1D6M7N5/154-253 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6M7N5/154-253 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6M7Q0/4-103 AC A0A1D6M7Q0 #=GS A0A1D6M7Q0/4-103 OS Zea mays #=GS A0A1D6M7Q0/4-103 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6M7Q0/4-103 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS K7V170/153-255 AC K7V170 #=GS K7V170/153-255 OS Zea mays #=GS K7V170/153-255 DE Protein RNA-directed DNA methylation 3 #=GS K7V170/153-255 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6M7N2/154-253 AC A0A1D6M7N2 #=GS A0A1D6M7N2/154-253 OS Zea mays #=GS A0A1D6M7N2/154-253 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6M7N2/154-253 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6FT67/4-103 AC A0A1D6FT67 #=GS A0A1D6FT67/4-103 OS Zea mays #=GS A0A1D6FT67/4-103 DE Protein RNA-directed DNA methylation 3 #=GS A0A1D6FT67/4-103 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS K3Z481/156-256 AC K3Z481 #=GS K3Z481/156-256 OS Setaria italica #=GS K3Z481/156-256 DE Uncharacterized protein #=GS K3Z481/156-256 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GF SQ 25 F4JW79/127-232 DDDIKDAIEMDALAPTSKDPPIWKVKCAIGRERRSVFCLMHKFVELRKIGTKLEIISVFSVDHVKGFIFIEADKEHDVLEACKSLVGIYATRMVLLPKAETPNLLT------------ A0A1P8BFP7/127-232 DDDIKDAIEMDALAPTSKDPPIWKVKCAIGRERRSVFCLMHKFVELRKIGTKLEIISVFSVDHVKGFIFIEADKEHDVLEACKSLVGIYATRMVLLPKAETPNLLT------------ A0A178UGI6/127-232 DDDIKDAIEMDALAPTSKDPPIWKVKCAIGRERRSVFCLMHKFVELRKIGTKLEIISVFSVDHVKGFIFIEADKEHDVLEACKSLVGIYATRMVLLPKAETPNLLT------------ F6HNC9/61-166 DYETKRSVQRNSLIPSIKDPTIWKVKCMVGRERLSAFCLMQKYVDLQSLGTKLQIISAFSVEHVKGFIYIEADKQCDINEACKGLCSIYTSRVAPVPKNEVTHLLS------------ A0D4Q4/121-224 GDDV-DKSEDEIEKPGLRDPKFWRVSCNKGKEQEAVTSIMFKHNHLIDT-NPLEIVSVFALKKFPAAIFIEANFEQHVMRAIEGLTIVRQCPPELVESEQCPNMFK------------ A0A1D6FT60/4-103 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEIS--- D7LXH3/127-232 DDDVKDAIEMDALAPTSKDPPIWKVKCAIGRERRSAFCLMHKFVELKKIGTKLQIISVFSLDHVKGFIFIEADKEHDVLEACKSLTGIYATRMVLLPKAETPNLLT------------ A0A368QGJ9/156-256 G--------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFVFVEAEKACDVTEACKGFCSVYASRIISVPAAEVPSLLSSRTKPFEIS--- A0A1Z5R3E8/156-255 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYVSRITSVPAAEVPSLLSSRTKPFVLS--- A0A3L6T3M6/149-252 G--------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFVFVEAEKACDVTEACKGFCSVYASRITSVPAAEVPSLLSSRTKPFEISRGT A0A1D6FT45/153-252 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEIS--- A0A1D6FT54/4-103 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEIS--- A0A1D6M7N6/154-256 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKAGYVTEACKGFCSVYTSRITSVPATEVPSLLSSRTKPFEISRGT A0A1D6M7N3/154-253 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKAGYVTEACKGFCSVYTSRITSVPATEVPSLLSSRTKPFEIS--- A0A1D6M7N4/154-256 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKAGYVTEACKGFCSVYTSRITSVPATEVPSLLSSRTKPFEISRGT A0A1D6FT44/153-252 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEIS--- A0A1D6FT64/153-252 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEIS--- A0A1D6FT50/153-252 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEIS--- A0A1D6M7P9/4-103 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKAGYVTEACKGFCSVYTSRITSVPATEVPSLLSSRTKPFEIS--- A0A1D6M7N5/154-253 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKAGYVTEACKGFCSVYTSRITSVPATEVPSLLSSRTKPFEIS--- A0A1D6M7Q0/4-103 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKAGYVTEACKGFCSVYTSRITSVPATEVPSLLSSRTKPFEIS--- K7V170/153-255 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEISRGT A0A1D6M7N2/154-253 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKAGYVTEACKGFCSVYTSRITSVPATEVPSLLSSRTKPFEIS--- A0A1D6FT67/4-103 ---------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLRKIGTKVPIITAFALDHIRGFVFVEAEKACDVTEACKGFCSVYTSRITSVPAAEVPSLLSSRTKPFEIS--- K3Z481/156-256 G--------------ALKEPTIWRVKCMVGRERQMAFCFMQKFVDLQKIGTKVPIITAFALDHVRGFVFVEAEKACDVTEACKGFCSVYASRIISVPAAEVPSLLSSRTKPFEIS--- #=GC scorecons 1111111110111015587957979795598975567759597769567777649866966776677787996754584797766457755754467557585875222222222000 #=GC scorecons_70 _________________***_******__****__***_*_*****_******_**__*****__*********___*_******__**__*___**__*_*_**_____________ #=GC scorecons_80 _________________*_*_******__****___**_*_***_*__*_**__**__*__**__**_*_**_____*_****____**__*____*__*_*_**_____________ #=GC scorecons_90 _________________*_*__*_*_*__***_______*_*___*________**__*_________*_**_____*__*____________________*________________ //