# STOCKHOLM 1.0
#=GF ID 3.30.70.660/FF/000036
#=GF DE tRNA pseudouridine synthase A
#=GF AC 3.30.70.660/FF/000036
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 84.226
#=GS Q5JI92/107-264  AC Q5JI92
#=GS Q5JI92/107-264  OS Thermococcus kodakarensis KOD1
#=GS Q5JI92/107-264  DE tRNA pseudouridine synthase A
#=GS Q5JI92/107-264  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; 
#=GS Q5JI92/107-264  DR EC; 5.4.99.12; 
#=GS Q59069/99-252   AC Q59069
#=GS Q59069/99-252   OS Methanocaldococcus jannaschii DSM 2661
#=GS Q59069/99-252   DE tRNA pseudouridine synthase A
#=GS Q59069/99-252   DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS Q59069/99-252   DR EC; 5.4.99.12; 
#=GS F6R255/258-444  AC F6R255
#=GS F6R255/258-444  OS Ciona intestinalis
#=GS F6R255/258-444  DE tRNA pseudouridine(38/39) synthase
#=GS F6R255/258-444  DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A2EY58/145-333  AC A2EY58
#=GS A2EY58/145-333  OS Trichomonas vaginalis
#=GS A2EY58/145-333  DE tRNA pseudouridine synthase
#=GS A2EY58/145-333  DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GF SQ 4
Q5JI92/107-264          --KFKTYRYYLVNEGFDLSAMRECASLFVGRHDFSAFAKLEPG---RDPIREVERVEVIE-RQ------GYLVIEVQGKSFLWEMVRRIVNALRFCGLGLLEAEEVERMLSGEYGKKIPPAP---PEGLVLWHIEY--PGIGFEGDEKGIKKARRDIFERYSRALTRAALFGDFL----------------------------
Q59069/99-252           ----RHYRYILPNIGYDVDAIKEGAKKMIGTHSFHNLSKRDRTKE-KSPIRTIYDIKISE-NE------FYLTVDIIGESFLWNMVRKIVGALDLVGRGKKPVEWIDKLLDENHREGVPTFP---PEGLILVEAKV---DIEYIYDNYSIRKFKEYWGEFFKLQVMKIGIAK-------------------------------
F6R255/258-444          QCRSRTYRYAFVRGSMDIELMNEAAQKFVGRHDMRNFCKVSSENAYRTYVRTINSIKVEEFNQTNLPECDICVATISAESYVYKQIRRMMSILGRIGSGEIPPSTIDEMLDVEKNPKKPSFKSWTPLNLTLIDAEFDEEDVHWRWGEEALADTSTMLANAYSKHAGQAEVARYMYERVVSQIQDPGY----------------
A2EY58/145-333          --ATRGYRYFFHKFDKNIDLMKEAAEHLLGEHDYRAFCKFSPDST-KHCVRKIYKCEFGDAGG------GVWYFEIVGSGFIWHQIRCIASILFAVGNGFEKPSITKELLNTAKYPGRPNYPIADPEPLVFWNAGY--ENIDWKIDEAVEKKMKTNFALQLIDAEMRAAVLRCFID---GDLQPPAAKKWCPVENLDQCKSVE
#=GC scorecons          00117399925341426544659393345939644464924331106236937334542703400000023333472636755346946445911492911344144469423423429345000943946236440024734216613345243223314323235645341210000000101000000000000000000
#=GC scorecons_70       ____*_***_______*___*_*_*____*_*____*_*_______*__**_*______*_______________*____*____**_*___*___*_*__________*________*______*__*_*_________*_____*________________________________________________________
#=GC scorecons_80       ____*_***_____________*_*____*_*______*___________*_*______________________*____*_____*_____*___*_*__________*________*______*__*__________________________________________________________________________
#=GC scorecons_90       ______***_____________*_*____*_*______*___________*___________________________________*_____*___*_*__________*________*______*__*__________________________________________________________________________
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