# STOCKHOLM 1.0
#=GF ID 3.30.70.330/FF/000918
#=GF DE Regulatory protein E2
#=GF AC 3.30.70.330/FF/000918
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 65.799
#=GS 3mi7X00/1-85        AC P03120
#=GS 3mi7X00/1-85        OS Human papillomavirus type 16
#=GS 3mi7X00/1-85        DE Regulatory protein E2
#=GS 3mi7X00/1-85        DR CATH; 3mi7; X:284-365; 
#=GS 3mi7X00/1-85        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS 3mi7X00/1-85        DR GO; GO:0005515; GO:0044163; 
#=GS P04015/281-367      AC P04015
#=GS P04015/281-367      OS Human papillomavirus type 11
#=GS P04015/281-367      DE Regulatory protein E2
#=GS P04015/281-367      DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS P04015/281-367      DR GO; GO:0005515; GO:0039693; 
#=GS D7GMV3/281-367      AC D7GMV3
#=GS D7GMV3/281-367      OS Human papillomavirus type 11
#=GS D7GMV3/281-367      DE Regulatory protein E2
#=GS D7GMV3/281-367      DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS D7GMV3/281-367      DR GO; GO:0044163; 
#=GS 2q79A00/1-93        AC P03120
#=GS 2q79A00/1-93        OS Human papillomavirus type 16
#=GS 2q79A00/1-93        DE Regulatory protein E2
#=GS 2q79A00/1-93        DR CATH; 2q79; A:283-362; 
#=GS 2q79A00/1-93        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS 2q79A00/1-93        DR GO; GO:0005515; GO:0044163; 
#=GS 1zzfB00/1-81        AC P03120
#=GS 1zzfB00/1-81        OS Human papillomavirus type 16
#=GS 1zzfB00/1-81        DE Regulatory protein E2
#=GS 1zzfB00/1-81        DR CATH; 1zzf; B:1-81; 
#=GS 1zzfB00/1-81        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS 1zzfB00/1-81        DR GO; GO:0005515; GO:0044163; 
#=GS 1zzfA00/1-81        AC P03120
#=GS 1zzfA00/1-81        OS Human papillomavirus type 16
#=GS 1zzfA00/1-81        DE Regulatory protein E2
#=GS 1zzfA00/1-81        DR CATH; 1zzf; A:1-81; 
#=GS 1zzfA00/1-81        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS 1zzfA00/1-81        DR GO; GO:0005515; GO:0044163; 
#=GS 1r8pB00/1-81        AC P03120
#=GS 1r8pB00/1-81        OS Human papillomavirus type 16
#=GS 1r8pB00/1-81        DE Regulatory protein E2
#=GS 1r8pB00/1-81        DR CATH; 1r8p; B:1-81; 
#=GS 1r8pB00/1-81        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS 1r8pB00/1-81        DR GO; GO:0005515; GO:0044163; 
#=GS 1r8pA00/1-81        AC P03120
#=GS 1r8pA00/1-81        OS Human papillomavirus type 16
#=GS 1r8pA00/1-81        DE Regulatory protein E2
#=GS 1r8pA00/1-81        DR CATH; 1r8p; A:1-81; 
#=GS 1r8pA00/1-81        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS 1r8pA00/1-81        DR GO; GO:0005515; GO:0044163; 
#=GS 1by9A00/1-81        AC P03120
#=GS 1by9A00/1-81        OS Human papillomavirus type 16
#=GS 1by9A00/1-81        DE Regulatory protein E2
#=GS 1by9A00/1-81        DR CATH; 1by9; A:283-362; 
#=GS 1by9A00/1-81        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS 1by9A00/1-81        DR GO; GO:0005515; GO:0044163; 
#=GS 2aygB00/1-87        AC Q84294
#=GS 2aygB00/1-87        OS Human papillomavirus type 6a
#=GS 2aygB00/1-87        DE Regulatory protein E2
#=GS 2aygB00/1-87        DR CATH; 2ayg; B:281-366; 
#=GS 2aygB00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2aygA00/1-87        AC Q84294
#=GS 2aygA00/1-87        OS Human papillomavirus type 6a
#=GS 2aygA00/1-87        DE Regulatory protein E2
#=GS 2aygA00/1-87        DR CATH; 2ayg; A:281-366; 
#=GS 2aygA00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2ayeF00/1-87        AC Q84294
#=GS 2ayeF00/1-87        OS Human papillomavirus type 6a
#=GS 2ayeF00/1-87        DE Regulatory protein E2
#=GS 2ayeF00/1-87        DR CATH; 2aye; F:282-366; 
#=GS 2ayeF00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2ayeE00/1-87        AC Q84294
#=GS 2ayeE00/1-87        OS Human papillomavirus type 6a
#=GS 2ayeE00/1-87        DE Regulatory protein E2
#=GS 2ayeE00/1-87        DR CATH; 2aye; E:281-366; 
#=GS 2ayeE00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2ayeD00/1-87        AC Q84294
#=GS 2ayeD00/1-87        OS Human papillomavirus type 6a
#=GS 2ayeD00/1-87        DE Regulatory protein E2
#=GS 2ayeD00/1-87        DR CATH; 2aye; D:281-366; 
#=GS 2ayeD00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2ayeC00/1-87        AC Q84294
#=GS 2ayeC00/1-87        OS Human papillomavirus type 6a
#=GS 2ayeC00/1-87        DE Regulatory protein E2
#=GS 2ayeC00/1-87        DR CATH; 2aye; C:281-366; 
#=GS 2ayeC00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2ayeB00/1-87        AC Q84294
#=GS 2ayeB00/1-87        OS Human papillomavirus type 6a
#=GS 2ayeB00/1-87        DE Regulatory protein E2
#=GS 2ayeB00/1-87        DR CATH; 2aye; B:281-366; 
#=GS 2ayeB00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2ayeA00/1-87        AC Q84294
#=GS 2ayeA00/1-87        OS Human papillomavirus type 6a
#=GS 2ayeA00/1-87        DE Regulatory protein E2
#=GS 2ayeA00/1-87        DR CATH; 2aye; A:282-366; 
#=GS 2ayeA00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2aybB00/1-87        AC Q84294
#=GS 2aybB00/1-87        OS Human papillomavirus type 6a
#=GS 2aybB00/1-87        DE Regulatory protein E2
#=GS 2aybB00/1-87        DR CATH; 2ayb; B:281-366; 
#=GS 2aybB00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 2aybA00/1-87        AC Q84294
#=GS 2aybA00/1-87        OS Human papillomavirus type 6a
#=GS 2aybA00/1-87        DE Regulatory protein E2
#=GS 2aybA00/1-87        DR CATH; 2ayb; A:281-366; 
#=GS 2aybA00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 1r8hF00/1-87        AC Q84294
#=GS 1r8hF00/1-87        OS Human papillomavirus type 6a
#=GS 1r8hF00/1-87        DE Regulatory protein E2
#=GS 1r8hF00/1-87        DR CATH; 1r8h; F:281-366; 
#=GS 1r8hF00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 1r8hE00/1-87        AC Q84294
#=GS 1r8hE00/1-87        OS Human papillomavirus type 6a
#=GS 1r8hE00/1-87        DE Regulatory protein E2
#=GS 1r8hE00/1-87        DR CATH; 1r8h; E:281-366; 
#=GS 1r8hE00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 1r8hD00/1-87        AC Q84294
#=GS 1r8hD00/1-87        OS Human papillomavirus type 6a
#=GS 1r8hD00/1-87        DE Regulatory protein E2
#=GS 1r8hD00/1-87        DR CATH; 1r8h; D:281-366; 
#=GS 1r8hD00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 1r8hC00/1-87        AC Q84294
#=GS 1r8hC00/1-87        OS Human papillomavirus type 6a
#=GS 1r8hC00/1-87        DE Regulatory protein E2
#=GS 1r8hC00/1-87        DR CATH; 1r8h; C:281-366; 
#=GS 1r8hC00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 1r8hB00/1-87        AC Q84294
#=GS 1r8hB00/1-87        OS Human papillomavirus type 6a
#=GS 1r8hB00/1-87        DE Regulatory protein E2
#=GS 1r8hB00/1-87        DR CATH; 1r8h; B:281-366; 
#=GS 1r8hB00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS 1r8hA00/1-87        AC Q84294
#=GS 1r8hA00/1-87        OS Human papillomavirus type 6a
#=GS 1r8hA00/1-87        DE Regulatory protein E2
#=GS 1r8hA00/1-87        DR CATH; 1r8h; A:281-366; 
#=GS 1r8hA00/1-87        DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS A0A0E9FXX5/281-367  AC A0A0E9FXX5
#=GS A0A0E9FXX5/281-367  OS Chlamydia trachomatis
#=GS A0A0E9FXX5/281-367  DE E2 (Early) protein, N terminal
#=GS A0A0E9FXX5/281-367  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A1U9YFD2/285-365  AC A0A1U9YFD2
#=GS A0A1U9YFD2/285-365  OS Human papillomavirus
#=GS A0A1U9YFD2/285-365  DE Regulatory protein E2
#=GS A0A1U9YFD2/285-365  DR ORG; Viruses; Papillomaviridae; Human papillomavirus; 
#=GS P06790/283-365      AC P06790
#=GS P06790/283-365      OS Human papillomavirus type 18
#=GS P06790/283-365      DE Regulatory protein E2
#=GS P06790/283-365      DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 7; 
#=GS P06790/283-365      DR GO; GO:0005515; GO:0044163; 
#=GS P03120/285-365      AC P03120
#=GS P03120/285-365      OS Human papillomavirus type 16
#=GS P03120/285-365      DE Regulatory protein E2
#=GS P03120/285-365      DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS P03120/285-365      DR GO; GO:0005515; GO:0044163; 
#=GS B9UPF0/281-367      AC B9UPF0
#=GS B9UPF0/281-367      OS Human papillomavirus type 11
#=GS B9UPF0/281-367      DE Regulatory protein E2
#=GS B9UPF0/281-367      DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10; 
#=GS A0A384K9A3/285-365  AC A0A384K9A3
#=GS A0A384K9A3/285-365  OS Human papillomavirus type 16
#=GS A0A384K9A3/285-365  DE Regulatory protein E2
#=GS A0A384K9A3/285-365  DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS Q549Q0/285-365      AC Q549Q0
#=GS Q549Q0/285-365      OS Human papillomavirus type 16
#=GS Q549Q0/285-365      DE Regulatory protein E2
#=GS Q549Q0/285-365      DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS A0A160CCW9/285-365  AC A0A160CCW9
#=GS A0A160CCW9/285-365  OS Alphapapillomavirus 9
#=GS A0A160CCW9/285-365  DE Regulatory protein E2
#=GS A0A160CCW9/285-365  DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GS A0A161HCU6/255-335  AC A0A161HCU6
#=GS A0A161HCU6/255-335  OS Alphapapillomavirus 9
#=GS A0A161HCU6/255-335  DE Regulatory protein E2
#=GS A0A161HCU6/255-335  DR ORG; Viruses; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 9; 
#=GF SQ 34
3mi7X00/1-85                MVSNTTPIVELKGDANTLKCLRYRFK-KHSTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
P04015/281-367              --SAATPIVQLQGDSNCLKCFRYRLNDKYKHLFELASSTWHWASPEAPHKNAIVTLTYSSEEQRQQFLNSVKIPPTIRHKVGFMSLH---------LL
D7GMV3/281-367              --SAATPIVQLQGDSNCLKCFRYRLNDKYRHLFELASSTWHWASPEAPHKNAIVTLTYSSEEQRQQFLNSVKIPPTIRHKVGFMSLH---------LL
2q79A00/1-93                ----TTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSIGGGTGGGSGGGS
1zzfB00/1-81                ----MTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
1zzfA00/1-81                ----MTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
1r8pB00/1-81                ----MTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
1r8pA00/1-81                ----MTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
1by9A00/1-81                ----TTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
2aygB00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2aygA00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2ayeF00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2ayeE00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2ayeD00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2ayeC00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2ayeB00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2ayeA00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2aybB00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
2aybA00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
1r8hF00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
1r8hE00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
1r8hD00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
1r8hC00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
1r8hB00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
1r8hA00/1-87                --SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMH---------LL
A0A0E9FXX5/281-367          --SAATPIVQLQGDSNCLKCFRYRLNDKYKHLFELASSTWHWASPEAPHKNAIVTLTYSSEEQRQQFLNSVKIPPTIRHKVGFMSLH---------LL
A0A1U9YFD2/285-365          ----TTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
P06790/283-365              -SGNTTPIIHLKGDRNSLKCLRYRLR-KHSDHYRDISSTWHWTGAG-NEKTGILTVTYHSETQRTKFLNTVAIPDSVQILVGYMTM------------
P03120/285-365              ----TTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
B9UPF0/281-367              --SAATPIVQLQGDSNCLKCFRYRLNDKYKHLFELASSTWHWASPEAPHKNAIVTLTYSSEEQRQQFLNSVKIPPTIRHKVGFMSLH---------LL
A0A384K9A3/285-365          ----TTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
Q549Q0/285-365              ----TTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
A0A160CCW9/285-365          ----TTPIVHLKGDANTLKCLRYRFK-KHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI------------
A0A161HCU6/255-335          ----TTPIVHLKGDANTLKCLRYRFK-KHCKLYTAVSSTWHWTGHNVKHKSAIVTLTYNSEWQREQFLSQVKIPKTITVSTGFMSI------------
#=GC scorecons              00225999866697595999699966298458745699999966555589489896995994995899649899488545598986200000000022
#=GC scorecons_70           _____*********_*_********__**__**__********_____**_*******_**_**_***__****_**____*****____________
#=GC scorecons_80           _____****___**_*_***_***___**__**___******______**_****_**_**_**_***__****_**____****_____________
#=GC scorecons_90           _____****___*__*_***_***___**__*____******______**_****_**_**_**_***__****_**____****_____________
//