# STOCKHOLM 1.0 #=GF ID 3.30.70.1560/FF/000005 #=GF DE RNA pseudouridylate synthase #=GF AC 3.30.70.1560/FF/000005 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 47.569 #=GS A0A0U1RIB5/155-234 AC A0A0U1RIB5 #=GS A0A0U1RIB5/155-234 OS Neisseria meningitidis Z2491 #=GS A0A0U1RIB5/155-234 DE Putative RNA-binding protein #=GS A0A0U1RIB5/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS B8C425/295-402 AC B8C425 #=GS B8C425/295-402 OS Thalassiosira pseudonana #=GS B8C425/295-402 DE Uncharacterized protein #=GS B8C425/295-402 DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; #=GS F5S6H7/146-225 AC F5S6H7 #=GS F5S6H7/146-225 OS Kingella kingae ATCC 23330 #=GS F5S6H7/146-225 DE Ribosomal large subunit pseudouridine synthase F #=GS F5S6H7/146-225 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella; Kingella kingae; #=GS A0A376BSK7/148-227 AC A0A376BSK7 #=GS A0A376BSK7/148-227 OS Alysiella crassa #=GS A0A376BSK7/148-227 DE Ribosomal large subunit pseudouridine synthase F #=GS A0A376BSK7/148-227 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Alysiella; Alysiella crassa; #=GS A0A378UDY9/149-228 AC A0A378UDY9 #=GS A0A378UDY9/149-228 OS Bergeriella denitrificans #=GS A0A378UDY9/149-228 DE RNA-binding protein #=GS A0A378UDY9/149-228 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Bergeriella; Bergeriella denitrificans; #=GS V9H613/148-227 AC V9H613 #=GS V9H613/148-227 OS Simonsiella muelleri ATCC 29453 #=GS V9H613/148-227 DE Pseudouridine synthase #=GS V9H613/148-227 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Simonsiella; Simonsiella muelleri; #=GS A0A2J0Y7X8/149-228 AC A0A2J0Y7X8 #=GS A0A2J0Y7X8/149-228 OS Neisseria sp. N177_16 #=GS A0A2J0Y7X8/149-228 DE rRNA pseudouridine synthase #=GS A0A2J0Y7X8/149-228 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria sp. N177_16; #=GS A0A2H9X1X9/149-228 AC A0A2H9X1X9 #=GS A0A2H9X1X9/149-228 OS Neisseria sp. N95_16 #=GS A0A2H9X1X9/149-228 DE rRNA pseudouridine synthase #=GS A0A2H9X1X9/149-228 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria sp. N95_16; #=GS Q5F9K4/155-234 AC Q5F9K4 #=GS Q5F9K4/155-234 OS Neisseria gonorrhoeae FA 1090 #=GS Q5F9K4/155-234 DE Pseudouridylate synthase #=GS Q5F9K4/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; #=GS A0A1E9M5Z1/150-229 AC A0A1E9M5Z1 #=GS A0A1E9M5Z1/150-229 OS Neisseria sp. HMSC070A01 #=GS A0A1E9M5Z1/150-229 DE Pseudouridylate synthase #=GS A0A1E9M5Z1/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria sp. HMSC070A01; #=GS E5UJC9/150-229 AC E5UJC9 #=GS E5UJC9/150-229 OS Neisseria mucosa C102 #=GS E5UJC9/150-229 DE RNA-binding protein #=GS E5UJC9/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria mucosa; #=GS A0A220S3I0/150-229 AC A0A220S3I0 #=GS A0A220S3I0/150-229 OS Neisseria sp. 10023 #=GS A0A220S3I0/150-229 DE Pseudouridylate synthase #=GS A0A220S3I0/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria sp. 10023; #=GS C6M8U8/150-229 AC C6M8U8 #=GS C6M8U8/150-229 OS Neisseria sicca ATCC 29256 #=GS C6M8U8/150-229 DE Pseudouridylate synthase #=GS C6M8U8/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria sicca; #=GS A0A1E9VP47/150-229 AC A0A1E9VP47 #=GS A0A1E9VP47/150-229 OS Neisseria sp. HMSC077D05 #=GS A0A1E9VP47/150-229 DE Pseudouridylate synthase #=GS A0A1E9VP47/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria sp. HMSC077D05; #=GS A0A448VPU0/150-229 AC A0A448VPU0 #=GS A0A448VPU0/150-229 OS Neisseria weaveri #=GS A0A448VPU0/150-229 DE RNA-binding protein #=GS A0A448VPU0/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria weaveri; #=GS F9EU69/150-229 AC F9EU69 #=GS F9EU69/150-229 OS Neisseria macacae ATCC 33926 #=GS F9EU69/150-229 DE Ribosomal large subunit pseudouridine synthase F #=GS F9EU69/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria macacae; #=GS E6MY85/155-234 AC E6MY85 #=GS E6MY85/155-234 OS Neisseria meningitidis H44/76 #=GS E6MY85/155-234 DE Uncharacterized protein #=GS E6MY85/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS A0A0A8F840/155-234 AC A0A0A8F840 #=GS A0A0A8F840/155-234 OS Neisseria meningitidis LNP21362 #=GS A0A0A8F840/155-234 DE RNA pseudouridylate synthase #=GS A0A0A8F840/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS A0A0Y5I2G8/155-234 AC A0A0Y5I2G8 #=GS A0A0Y5I2G8/155-234 OS Neisseria meningitidis #=GS A0A0Y5I2G8/155-234 DE RNA-binding protein #=GS A0A0Y5I2G8/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS A0A0H5QAW5/155-234 AC A0A0H5QAW5 #=GS A0A0H5QAW5/155-234 OS Neisseria meningitidis serogroup B #=GS A0A0H5QAW5/155-234 DE tRNA pseudouridine synthase A #=GS A0A0H5QAW5/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS Q9K020/155-234 AC Q9K020 #=GS Q9K020/155-234 OS Neisseria meningitidis MC58 #=GS Q9K020/155-234 DE Uncharacterized protein #=GS Q9K020/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS I4E6P9/155-234 AC I4E6P9 #=GS I4E6P9/155-234 OS Neisseria meningitidis alpha522 #=GS I4E6P9/155-234 DE Ribosomal large subunit pseudouridine synthase F #=GS I4E6P9/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS A0A2K8EV27/155-234 AC A0A2K8EV27 #=GS A0A2K8EV27/155-234 OS Neisseria gonorrhoeae NG-k51.05 #=GS A0A2K8EV27/155-234 DE RNA pseudouridylate synthase #=GS A0A2K8EV27/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; #=GS B4RK89/155-234 AC B4RK89 #=GS B4RK89/155-234 OS Neisseria gonorrhoeae NCCP11945 #=GS B4RK89/155-234 DE RNA-binding protein #=GS B4RK89/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; #=GS D6H998/155-234 AC D6H998 #=GS D6H998/155-234 OS Neisseria gonorrhoeae DGI2 #=GS D6H998/155-234 DE RNA-binding protein #=GS D6H998/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; #=GS A0A1D3HZW2/155-234 AC A0A1D3HZW2 #=GS A0A1D3HZW2/155-234 OS Neisseria gonorrhoeae #=GS A0A1D3HZW2/155-234 DE RNA-binding protein #=GS A0A1D3HZW2/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; #=GS A0A0M3GYV5/155-234 AC A0A0M3GYV5 #=GS A0A0M3GYV5/155-234 OS Neisseria gonorrhoeae MIA_2011_03-10 #=GS A0A0M3GYV5/155-234 DE RNA pseudouridylate synthase #=GS A0A0M3GYV5/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; #=GS D2ZZ08/150-229 AC D2ZZ08 #=GS D2ZZ08/150-229 OS Neisseria mucosa ATCC 25996 #=GS D2ZZ08/150-229 DE Pseudouridylate synthase #=GS D2ZZ08/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria mucosa; #=GS A0A0G4C0E6/155-234 AC A0A0G4C0E6 #=GS A0A0G4C0E6/155-234 OS Neisseria meningitidis M0579 #=GS A0A0G4C0E6/155-234 DE Ribosomal large subunit pseudouridine synthase F #=GS A0A0G4C0E6/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS A1KT63/155-234 AC A1KT63 #=GS A1KT63/155-234 OS Neisseria meningitidis FAM18 #=GS A1KT63/155-234 DE Putative RNA-binding protein #=GS A1KT63/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS E3D3G4/155-234 AC E3D3G4 #=GS E3D3G4/155-234 OS Neisseria meningitidis alpha710 #=GS E3D3G4/155-234 DE Putative RNA-binding protein #=GS E3D3G4/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS X5EIE7/155-234 AC X5EIE7 #=GS X5EIE7/155-234 OS Neisseria meningitidis #=GS X5EIE7/155-234 DE RNA-binding protein #=GS X5EIE7/155-234 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; #=GS I2NUY5/150-229 AC I2NUY5 #=GS I2NUY5/150-229 OS Neisseria sicca VK64 #=GS I2NUY5/150-229 DE Pseudouridylate synthase #=GS I2NUY5/150-229 DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria sicca; #=GF SQ 33 A0A0U1RIB5/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK B8C425/295-402 IPKEYIVKVQPAVQPTTHEKEAGLLSLPSPTRNLTSLLRGGKRLWNDKKALKPVLEAEWLEENPVLSNGGTLRLVLQEGKKRQIRRMCREILGMHVVSLVRKSIGPIQ F5S6H7/146-225 SEKEYLVRVKGTLS------PQGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A376BSK7/148-227 SEKEYLVRVKGKLT------ENGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRIGKVK A0A378UDY9/149-228 SEKEYLVRVRGKLD------DKGL-----------ALLNHGLSL--DGEKLRPA-QVSWQNED-------QLRFILKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK V9H613/148-227 SEKEYLVRVKGNLI------ENGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRIGKVK A0A2J0Y7X8/149-228 SEKEYLVRVRGKLD------DKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFILKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A2H9X1X9/149-228 SEKEYLVRVRGKLD------DKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFILKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK Q5F9K4/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGDKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A1E9M5Z1/150-229 SEKEYLVRVRGKLD------NKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFILRQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK E5UJC9/150-229 SEKEYLVRVRGKLD------NKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFILRQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A220S3I0/150-229 CEKEYLVRVRGRLD------DKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELIGLRVVGLKRIRMGRVK C6M8U8/150-229 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A1E9VP47/150-229 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A448VPU0/150-229 SEKEYLVRVKGKLG------DEGL-----------RLLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK F9EU69/150-229 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK E6MY85/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A0A8F840/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A0Y5I2G8/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A0H5QAW5/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK Q9K020/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK I4E6P9/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A2K8EV27/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGDKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK B4RK89/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGDKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK D6H998/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGDKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A1D3HZW2/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGDKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A0M3GYV5/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGDKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK D2ZZ08/150-229 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A0A0G4C0E6/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK A1KT63/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK E3D3G4/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK X5EIE7/155-234 SEKEYLVRVRGKLD------EKGL-----------ALLNHGLSL--DGEKLRPA-QVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK I2NUY5/150-229 SEKEYLVRVRGKLD------EKGL-----------GLLNHGLSL--DGEKLRPA-KVEWQNED-------QLRFVLKQGKKRQIRRMC-ELVGLRVVGLKRIRMGKVK #=GC scorecons 559996979655640000007499000000000005996595590095559796056895696000000059968966999999999909669669969595569576 #=GC scorecons_70 __*******___*_______*_**____________**__*__*__*___****__***_***________*****************_**********_*__**_** #=GC scorecons_80 __***_***_____________**____________**__*__*__*___***____**__*_________**_**__**********_*__*__**_*_*___*_*_ #=GC scorecons_90 __***_*_*_____________**____________**__*__*__*___*_*____**__*_________**_**__**********_*__*__**_*_*___*___ //