# STOCKHOLM 1.0 #=GF ID 3.30.67.10/FF/000003 #=GF DE Genome polyprotein #=GF AC 3.30.67.10/FF/000003 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 40.441 #=GS 6j5gA02/52-62_122-134_192-235_257-271 AC P14336 #=GS 6j5gA02/52-62_122-134_192-235_257-271 OS Tick-borne encephalitis virus (WESTERN SUBTYPE) #=GS 6j5gA02/52-62_122-134_192-235_257-271 DE Genome polyprotein #=GS 6j5gA02/52-62_122-134_192-235_257-271 DR CATH; 6j5g; A:52-62; A:122-134; A:192-235; A:257-271; #=GS 6j5gA02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS 6j5gA02/52-62_122-134_192-235_257-271 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q01299/332-342_402-414_472-521_543-557 AC Q01299 #=GS Q01299/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus (strain HYPR) #=GS Q01299/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS Q01299/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS Q01299/332-342_402-414_472-521_543-557 DR GO; GO:0039502; GO:0039563; #=GS Q01299/332-342_402-414_472-521_543-557 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS G4XII4/332-341_402-414_471-514_540-551 AC G4XII4 #=GS G4XII4/332-341_402-414_471-514_540-551 OS Tick-borne encephalitis virus #=GS G4XII4/332-341_402-414_471-514_540-551 DE Genome polyprotein #=GS G4XII4/332-341_402-414_471-514_540-551 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS G4XII4/332-341_402-414_471-514_540-551 DR GO; GO:0019079; #=GS 1svbA02/52-62_122-134_192-235_257-271 AC P14336 #=GS 1svbA02/52-62_122-134_192-235_257-271 OS Tick-borne encephalitis virus (WESTERN SUBTYPE) #=GS 1svbA02/52-62_122-134_192-235_257-271 DE Genome polyprotein #=GS 1svbA02/52-62_122-134_192-235_257-271 DR CATH; 1svb; A:52-62; A:122-134; A:192-235; A:257-271; #=GS 1svbA02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS 1svbA02/52-62_122-134_192-235_257-271 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS 1urzF02/52-62_122-134_192-235_257-271 AC Q80E47 #=GS 1urzF02/52-62_122-134_192-235_257-271 OS Tick-borne encephalitis virus #=GS 1urzF02/52-62_122-134_192-235_257-271 DE Polyprotein #=GS 1urzF02/52-62_122-134_192-235_257-271 DR CATH; 1urz; F:52-62; F:122-134; F:192-235; F:257-271; #=GS 1urzF02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS 1urzE02/52-62_122-134_192-235_257-271 AC Q80E47 #=GS 1urzE02/52-62_122-134_192-235_257-271 OS Tick-borne encephalitis virus #=GS 1urzE02/52-62_122-134_192-235_257-271 DE Polyprotein #=GS 1urzE02/52-62_122-134_192-235_257-271 DR CATH; 1urz; E:52-62; E:122-134; E:192-235; E:257-271; #=GS 1urzE02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS 1urzD02/52-62_122-134_192-235_257-271 AC Q80E47 #=GS 1urzD02/52-62_122-134_192-235_257-271 OS Tick-borne encephalitis virus #=GS 1urzD02/52-62_122-134_192-235_257-271 DE Polyprotein #=GS 1urzD02/52-62_122-134_192-235_257-271 DR CATH; 1urz; D:52-62; D:122-134; D:192-235; D:257-271; #=GS 1urzD02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS 1urzC02/52-62_122-134_192-235_257-271 AC Q80E47 #=GS 1urzC02/52-62_122-134_192-235_257-271 OS Tick-borne encephalitis virus #=GS 1urzC02/52-62_122-134_192-235_257-271 DE Polyprotein #=GS 1urzC02/52-62_122-134_192-235_257-271 DR CATH; 1urz; C:52-62; C:122-134; C:192-235; C:257-271; #=GS 1urzC02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS 1urzB02/52-62_122-134_192-235_257-271 AC Q80E47 #=GS 1urzB02/52-62_122-134_192-235_257-271 OS Tick-borne encephalitis virus #=GS 1urzB02/52-62_122-134_192-235_257-271 DE Polyprotein #=GS 1urzB02/52-62_122-134_192-235_257-271 DR CATH; 1urz; B:52-62; B:122-134; B:192-235; B:257-271; #=GS 1urzB02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS 1urzA02/52-62_122-134_192-235_257-271 AC Q80E47 #=GS 1urzA02/52-62_122-134_192-235_257-271 OS Tick-borne encephalitis virus #=GS 1urzA02/52-62_122-134_192-235_257-271 DE Polyprotein #=GS 1urzA02/52-62_122-134_192-235_257-271 DR CATH; 1urz; A:52-62; A:122-134; A:192-235; A:257-271; #=GS 1urzA02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS 6j5cA02/52-62_122-134_192-235_257-271 AC P22338 #=GS 6j5cA02/52-62_122-134_192-235_257-271 OS Louping ill virus #=GS 6j5cA02/52-62_122-134_192-235_257-271 DE Genome polyprotein #=GS 6j5cA02/52-62_122-134_192-235_257-271 DR CATH; 6j5c; A:52-62; A:122-134; A:192-235; A:257-271; #=GS 6j5cA02/52-62_122-134_192-235_257-271 DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; #=GS P29837/332-342_402-414_472-521_543-557 AC P29837 #=GS P29837/332-342_402-414_472-521_543-557 OS Langat virus (strain TP21) #=GS P29837/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS P29837/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; #=GS P29837/332-342_402-414_472-521_543-557 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q7T6D2/332-342_402-414_472-521_543-557 AC Q7T6D2 #=GS Q7T6D2/332-342_402-414_472-521_543-557 OS Omsk hemorrhagic fever virus #=GS Q7T6D2/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS Q7T6D2/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Omsk hemorrhagic fever virus; #=GS Q7T6D2/332-342_402-414_472-521_543-557 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS C3V005/335-345_405-417_475-524_546-560 AC C3V005 #=GS C3V005/335-345_405-417_475-524_546-560 OS Chimeric Tick-borne encephalitis virus/Dengue virus 4 #=GS C3V005/335-345_405-417_475-524_546-560 DE Genome polyprotein #=GS C3V005/335-345_405-417_475-524_546-560 DR ORG; Viruses; Flaviviridae; Flavivirus; Chimeric Tick-borne encephalitis virus/Dengue virus 4; #=GS P14336/332-342_402-414_472-521_543-557 AC P14336 #=GS P14336/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus (WESTERN SUBTYPE) #=GS P14336/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS P14336/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS P14336/332-342_402-414_472-521_543-557 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P07720/332-342_402-414_472-521_543-557 AC P07720 #=GS P07720/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus (STRAIN SOFJIN) #=GS P07720/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS P07720/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS P07720/332-342_402-414_472-521_543-557 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q0MUU1/52-62_122-134_192-241_263-277 AC Q0MUU1 #=GS Q0MUU1/52-62_122-134_192-241_263-277 OS Langat virus #=GS Q0MUU1/52-62_122-134_192-241_263-277 DE Envelope protein #=GS Q0MUU1/52-62_122-134_192-241_263-277 DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; #=GS P29838/332-342_402-414_472-521_543-557 AC P29838 #=GS P29838/332-342_402-414_472-521_543-557 OS Langat virus (strain Yelantsev) #=GS P29838/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS P29838/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; #=GS Q88489/332-342_402-414_472-521_543-557 AC Q88489 #=GS Q88489/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus #=GS Q88489/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS Q88489/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS A0A218KFE7/332-342_402-414_472-521_543-557 AC A0A218KFE7 #=GS A0A218KFE7/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus #=GS A0A218KFE7/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS A0A218KFE7/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS Q80E47/247-257_317-329_387-436_458-472 AC Q80E47 #=GS Q80E47/247-257_317-329_387-436_458-472 OS Tick-borne encephalitis virus #=GS Q80E47/247-257_317-329_387-436_458-472 DE Polyprotein #=GS Q80E47/247-257_317-329_387-436_458-472 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS D1FNM3/332-342_402-414_472-521_543-557 AC D1FNM3 #=GS D1FNM3/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus #=GS D1FNM3/332-342_402-414_472-521_543-557 DE Polyprotein #=GS D1FNM3/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS B5ATG5/332-342_402-414_472-521_543-557 AC B5ATG5 #=GS B5ATG5/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus #=GS B5ATG5/332-342_402-414_472-521_543-557 DE Polyprotein #=GS B5ATG5/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS B1PKD5/2-9_69-81_139-188_210-224 AC B1PKD5 #=GS B1PKD5/2-9_69-81_139-188_210-224 OS Tick-borne encephalitis virus #=GS B1PKD5/2-9_69-81_139-188_210-224 DE Envelope glycoprotein #=GS B1PKD5/2-9_69-81_139-188_210-224 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS Q99354/332-342_402-414_472-521_543-557 AC Q99354 #=GS Q99354/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus #=GS Q99354/332-342_402-414_472-521_543-557 DE Structural protein gene, 5' end #=GS Q99354/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS I1VEB1/332-342_402-414_472-521_543-557 AC I1VEB1 #=GS I1VEB1/332-342_402-414_472-521_543-557 OS Tick-borne encephalitis virus #=GS I1VEB1/332-342_402-414_472-521_543-557 DE Genome polyprotein #=GS I1VEB1/332-342_402-414_472-521_543-557 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GF SQ 26 6j5gA02/52-62_122-134_192-235_257-271 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWLGDQTGVLLKALAGV------ Q01299/332-342_402-414_472-521_543-557 NPAQTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGARNWNNAERLVLLKALAGVPVAHIE G4XII4/332-341_402-414_471-514_540-551 NPAKTREYCL-EAKKKATGHVYDAGVDLAQTVILELDKTSEHLPTAWQVHRDWFNDLALPWKHEGAQN----HTGVLLKSLAGV------ 1svbA02/52-62_122-134_192-235_257-271 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWLGDQTGVLLKALAGV------ 1urzF02/52-62_122-134_192-235_257-271 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWLGDQTGVLLKALAGV------ 1urzE02/52-62_122-134_192-235_257-271 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWLGDQTGVLLKALAGV------ 1urzD02/52-62_122-134_192-235_257-271 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWLGDQTGVLLKALAGV------ 1urzC02/52-62_122-134_192-235_257-271 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWLGDQTGVLLKALAGV------ 1urzB02/52-62_122-134_192-235_257-271 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWLGDQTGVLLKALAGV------ 1urzA02/52-62_122-134_192-235_257-271 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWLGDQTGVLLKALAGV------ 6j5cA02/52-62_122-134_192-235_257-271 SPAKTREYCLHEAKKKATGYVYDA-VDLAQTIILELDKTAEHLPTAWQVHRDWFNDLALPWKHDGNPHWLGDQTGVLLRALAGV------ P29837/332-342_402-414_472-521_543-557 SPAQTREYCLHEDKKKATGHVYDV-VDLAQTVVLALDKTHEHLPTAWQVHRDWFNDLALPWKHDGAEAWNEAGRLVLLKSLAGVPVASIE Q7T6D2/332-342_402-414_472-521_543-557 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVVLELDKTAEHLPTAWQVHRDWFNDLALPWKHEGMVGWNNAERLVLLKSLAGAPLAHIE C3V005/335-345_405-417_475-524_546-560 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTSEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVLLKSLAGVPVAHID P14336/332-342_402-414_472-521_543-557 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVLLKALAGVPVAHIE P07720/332-342_402-414_472-521_543-557 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTSEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVLLKSLAGVPVAHID Q0MUU1/52-62_122-134_192-241_263-277 SPAQTREYCLHEDKKKATGHVYDV-VDLAQTVVLALDKTHEHLPTAWQVHRDWFNDLALPWKHDGAEAWNEAGRLVLLKSLAGVPVASIE P29838/332-342_402-414_472-521_543-557 SPAQTREYCLHEDKKKATGHVYDV-VDLAQTVVLALDKTHEHLPTAWQVHRDWFNDLALPWKHDGAEAWNEAGRLVLLKSLAGVPVASIE Q88489/332-342_402-414_472-521_543-557 SPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVLLKALAGVPVAHIE A0A218KFE7/332-342_402-414_472-521_543-557 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTSEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVLLKSLAGVPVAHID Q80E47/247-257_317-329_387-436_458-472 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVLLKALAGVPVAHIE D1FNM3/332-342_402-414_472-521_543-557 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTLEHLPTAWQVHRDWFNDLALPWKHEGGQHWNNAERLVLLKSLAGVPVAHIA B5ATG5/332-342_402-414_472-521_543-557 SPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVLLKALAGVPVAHIE B1PKD5/2-9_69-81_139-188_210-224 ---QTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTLEHLPTAWQVHRDWFNDLALPWKHEGAQHWNNAERLVLLKSLAGVPVAHID Q99354/332-342_402-414_472-521_543-557 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTSEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVLLKSLAGVPVAHID I1VEB1/332-342_402-414_472-521_543-557 NPAKTREYCLHEAKKKATGHVYDA-VDLAQTVILELDKTLEHLPTAWQVHRDWFNDLALPWKHEGAQHWNNAERLVLLKSLAGVPVAHID #=GC scorecons 688799999979799999989997099999987979999499999999999999999999999797657445554999869998222222 #=GC scorecons_70 _***********************_**************_***************************_*______****_****______ #=GC scorecons_80 _***********************_**************_**************************__*______****_****______ #=GC scorecons_90 _**_******_*_**********__*******_*_****_***********************_*__________****_****______ //